The Human Phenotype Ontology in 2024: phenotypes around the world.
Michael A GarganoNicolas A MatentzogluBen ColemanEunice B Addo-LarteyAnna V AnagnostopoulosJoel AndertonPaul AvillachAnita M BagleyEduard BakšteinJames P BalhoffGareth BaynamSusan M BelloMichael BerkHolli BertramSomer L BishopHannah BlauDavid F BodensteinPablo BotasKaan BoztugJolana ČadyTiffany J CallahanRhiannon CameronSeth J CarbonFrancisco CastellanosJ Harry CaufieldLauren E ChanChristopher G ChuteJaime Cruz-RojoNoemi Dahan-OlielJon Robert DavidsMaud De DieuleveultVinicius de SouzaBert B A de VriesEsther de VriesJ Raymond DePauloBeata DerfalviFerdinand DhombresClaudia Diaz-ByrdAlexander J M DingemansBruno DonadilleMichael Henri DuyzendReem ElfekyShahim EssaidCarolina FabrizziGiovanna FicoHelen V FirthYun Freudenberg-HuaJanice M FullertonDavera L GabrielKimberley C GilmourJessica L GiordanoFernando S GoesRachel Gore MosesIan GreenMatthias GrieseTudor GrozaWeihong GuJulia PazmandiBenjamin M GyoriAda HamoshMarc HanauerKateřina HanušováYongqun Oliver HeHarshad HegdeIngo HelbigKateřina ŘehořováCharles Tapley HoytShangzhi HuangEric HurwitzJulius O B JacobsenXiaofeng JiangLisa JosephKamyar KeramatianBryan KingKatrin KnoflachDavid A KoolenMegan L KrausCarlo KrollMaaike A A KustersMarkus S LadewigDavid LagorceMeng-Chuan LaiPablo LapunzinaBryan LarawayDavid Lewis-SmithXiarong LiCaterina LucanoMarzieh MajdMary L MarazitaVictor Martínez-GonzálezToby H McHenryMelvin G McInnisJulie A McMurryMichaela ZelinováCaitlin E MillettPhilip B MitchellVeronika MoslerováKenji NarutomiShahrzad NematollahiJulián NevadoAndrew A NierenbergNikola Novák ČajbikováMichael C NealeSoichi OgishimaDaniel OlsonAbigail OrtizHarry PachajoaGuiomar Perez de NanclaresAmy T PetersTimothy PutmanChristina K RappAna RathJustin T ReeseLauren RekerleAngharad M RobertsSuzy RoyStephan J SandersCatharina SchuetzEva C SchulteThomas G SchulzeMartin SchwarzKatie ScottDominik SeelowBerthold SeitzYiping ShenMorgan N SimilukEric S SimonBalwinder SinghDamian SmedleyCynthia L SmithJake T SmolinskySarah H SperryElizabeth StaffordRay StefancsikRobin SteinhausRebecca StrawbridgeJagadish Chandrabose SundaramurthiPolina TalapovaJair Antonio Tenorio CastañoPavel TesnerRhys Huw ThomasAudrey ThurmMarek TurnovecMarielle E van GijnNicole A VasilevskyMarkéta VlčkováAnita WaldenKai WangRonald J WapnerJames Simon WareAddo A WiafeSamuel A WiafeLisa D WigginsAndrew E WilliamsChen WuMargot Julia WyrwollHui XiongNefize YalinYasunori YamamotoLakshmi N YathamAnastasia K YocumAllan H YoungZafer YükselPeter P ZandiAndreas ZanklIgnacio ZaranteMiroslav ZvolskýSabrina ToroLeigh C CarmodyNomi L HarrisMonica C Munoz-TorresDaniel DanisChristopher John MungallSebastian KoehlerMelissa A HaendelPeter Nick RobinsonPublished in: Nucleic acids research (2023)
The Human Phenotype Ontology (HPO) is a widely used resource that comprehensively organizes and defines the phenotypic features of human disease, enabling computational inference and supporting genomic and phenotypic analyses through semantic similarity and machine learning algorithms. The HPO has widespread applications in clinical diagnostics and translational research, including genomic diagnostics, gene-disease discovery, and cohort analytics. In recent years, groups around the world have developed translations of the HPO from English to other languages, and the HPO browser has been internationalized, allowing users to view HPO term labels and in many cases synonyms and definitions in ten languages in addition to English. Since our last report, a total of 2239 new HPO terms and 49235 new HPO annotations were developed, many in collaboration with external groups in the fields of psychiatry, arthrogryposis, immunology and cardiology. The Medical Action Ontology (MAxO) is a new effort to model treatments and other measures taken for clinical management. Finally, the HPO consortium is contributing to efforts to integrate the HPO and the GA4GH Phenopacket Schema into electronic health records (EHRs) with the goal of more standardized and computable integration of rare disease data in EHRs.