Genomics

Publications

volume 115, number 2, 2023

Jing Xie, Xueyang Tang, Chufei Xie, Yongqing Wang, Jianhua Huang, Jian Jin, Hao Liu, Can Zhong, Rongrong Zhou, Guangxi Ren, Shuihan Zhang
Comparative analysis of root anatomical structure, chemical components and differentially expressed genes between early bolting and unbolting in Peucedanum praeruptorum Dunn. Genomics 115 (2) (2023)
Jing Xie, Xueyang Tang, Chufei Xie, Yongqing Wang, Jianhua Huang, Jian Jin, Hao Liu, Can Zhong, Rongrong Zhou, Guangxi Ren, Shuihan Zhang
Comparative analysis of root anatomical structure, chemical components and differentially expressed genes between early bolting and unbolting in Peucedanum praeruptorum Dunn. Genomics 115 (2) (2023)
Maeva Halgrain, Nelly Bernardet, Christelle Hennequet-Antier, Maxwell Hincke, Sophie Réhault-Godbert
RNA-seq analysis of the active chick embryo chorioallantoic membrane reveals genes that encode proteins assigned to ion transport and innate immunity. Genomics 115 (2) (2023)
Marius Weisweiler, Benjamin Stich
Benchmarking of structural variant detection in the tetraploid potato genome using linked-read sequencing. Genomics 115 (2) (2023)
Vahap Eldem, Selim Can Kuralay, Gülperi Özdoğan, Gökçe Has Özçelik, Dilşah Aydın, Gökçe Çakmak, Mürüvvet Özlem Gürler, Selahattin Barış Çay, Yusuf Ulaş Çınar, Fatih Dikmen, Ishak Yusuf, Onur Obut, Özgecan Kayalar, Gözde Ertürk Zararsız, Masoud Edizadeh, Gökmen Zararsız, Eren Akdeniz, Hilal Özgür, Ismihan Merve Tekin
Comprehensive analysis of circulating viral DNA in maternal plasma at population-scale using low-pass whole-genome sequencing. Genomics 115 (2) (2023)
Huiyin Deng, Jiuyi Li, Abid Ali Shah, Lite Ge, Wen Ouyang
Comprehensive in-silico analysis of deleterious SNPs in APOC2 and APOA5 and their differential expression in cancer and cardiovascular diseases conditions. Genomics 115 (2) (2023)
Xi Yuan, Jiayu Huang, Li Wen, Boris Novakovic, Mark D Kilby, Chao Tong, Hongbo Qi, Richard Saffery, Philip N Baker
Genome-wide DNA methylation analysis of discordant monozygotic twins reveals consistent sites of differential methylation associated with congenital heart disease. Genomics 115 (2) (2023)
Vahap Eldem, Selim Can Kuralay, Gülperi Özdoğan, Gökçe Has Özçelik, Dilşah Aydın, Gökçe Çakmak, Mürüvvet Özlem Gürler, Selahattin Barış Çay, Yusuf Ulaş Çınar, Fatih Dikmen, Ishak Yusuf, Onur Obut, Özgecan Kayalar, Gözde Ertürk Zararsız, Masoud Edizadeh, Gökmen Zararsız, Eren Akdeniz, Hilal Özgür, Ismihan Merve Tekin
Comprehensive analysis of circulating viral DNA in maternal plasma at population-scale using low-pass whole-genome sequencing. Genomics 115 (2) (2023)
Xi Yuan, Jiayu Huang, Li Wen, Boris Novakovic, Mark D Kilby, Chao Tong, Hongbo Qi, Richard Saffery, Philip N Baker
Genome-wide DNA methylation analysis of discordant monozygotic twins reveals consistent sites of differential methylation associated with congenital heart disease. Genomics 115 (2) (2023)
Li Jiang, Heng Zhu, Jingyi Wei, Lei Jiang, Yan Li, Ruichao Li, Zhiqiang Wang, Mianzhi Wang
Enterobacteriaceae genome-wide analysis reveals roles for P1-like phage-plasmids in transmission of mcr-1, tetX4 and other antibiotic resistance genes. Genomics 115 (2) (2023)
Maeva Halgrain, Nelly Bernardet, Christelle Hennequet-Antier, Maxwell Hincke, Sophie Réhault-Godbert
RNA-seq analysis of the active chick embryo chorioallantoic membrane reveals genes that encode proteins assigned to ion transport and innate immunity. Genomics 115 (2) (2023)
Li Jiang, Heng Zhu, Jingyi Wei, Lei Jiang, Yan Li, Ruichao Li, Zhiqiang Wang, Mianzhi Wang
Enterobacteriaceae genome-wide analysis reveals roles for P1-like phage-plasmids in transmission of mcr-1, tetX4 and other antibiotic resistance genes. Genomics 115 (2) (2023)
Chengcai Yan, Haiting Hao, Hongzu Feng, Zhe Wang, Shuaishuai Sha, Meng Li, Lan Wang, Zhensheng Kang
Whole genome sequence of Cryptosphaeria pullmanensis, an important pathogenic fungus potentially threatening crop and forestry production. Genomics 115 (2) (2023)
Vahap Eldem, Selim Can Kuralay, Gülperi Özdoğan, Gökçe Has Özçelik, Dilşah Aydın, Gökçe Çakmak, Mürüvvet Özlem Gürler, Selahattin Barış Çay, Yusuf Ulaş Çınar, Fatih Dikmen, Ishak Yusuf, Onur Obut, Özgecan Kayalar, Gözde Ertürk Zararsız, Masoud Edizadeh, Gökmen Zararsız, Eren Akdeniz, Hilal Özgür, Ismihan Merve Tekin
Comprehensive analysis of circulating viral DNA in maternal plasma at population-scale using low-pass whole-genome sequencing. Genomics 115 (2) (2023)
Xi Yuan, Jiayu Huang, Li Wen, Boris Novakovic, Mark D Kilby, Chao Tong, Hongbo Qi, Richard Saffery, Philip N Baker
Genome-wide DNA methylation analysis of discordant monozygotic twins reveals consistent sites of differential methylation associated with congenital heart disease. Genomics 115 (2) (2023)
Vahap Eldem, Selim Can Kuralay, Gülperi Özdoğan, Gökçe Has Özçelik, Dilşah Aydın, Gökçe Çakmak, Mürüvvet Özlem Gürler, Selahattin Barış Çay, Yusuf Ulaş Çınar, Fatih Dikmen, Ishak Yusuf, Onur Obut, Özgecan Kayalar, Gözde Ertürk Zararsız, Masoud Edizadeh, Gökmen Zararsız, Eren Akdeniz, Hilal Özgür, Ismihan Merve Tekin
Comprehensive analysis of circulating viral DNA in maternal plasma at population-scale using low-pass whole-genome sequencing. Genomics 115 (2) (2023)
Mengyue Yang, Meng Zhang, Zhaoying Li, Jingbao Liu, Yanchao Li, Ziyu Yang, Xuedong Wang, Xingtao Huang, Bo Yu, Jingbo Hou, Qi Liu
A landscape of Long non-coding RNAs reveals the leading transcriptome alterations in murine aorta during aging. Genomics 115 (2) (2023)
Huiyin Deng, Jiuyi Li, Abid Ali Shah, Lite Ge, Wen Ouyang
Comprehensive in-silico analysis of deleterious SNPs in APOC2 and APOA5 and their differential expression in cancer and cardiovascular diseases conditions. Genomics 115 (2) (2023)
Xi Yuan, Jiayu Huang, Li Wen, Boris Novakovic, Mark D Kilby, Chao Tong, Hongbo Qi, Richard Saffery, Philip N Baker
Genome-wide DNA methylation analysis of discordant monozygotic twins reveals consistent sites of differential methylation associated with congenital heart disease. Genomics 115 (2) (2023)
Mengyue Yang, Meng Zhang, Zhaoying Li, Jingbao Liu, Yanchao Li, Ziyu Yang, Xuedong Wang, Xingtao Huang, Bo Yu, Jingbo Hou, Qi Liu
A landscape of Long non-coding RNAs reveals the leading transcriptome alterations in murine aorta during aging. Genomics 115 (2) (2023)
Marius Weisweiler, Benjamin Stich
Benchmarking of structural variant detection in the tetraploid potato genome using linked-read sequencing. Genomics 115 (2) (2023)
Jing Xie, Xueyang Tang, Chufei Xie, Yongqing Wang, Jianhua Huang, Jian Jin, Hao Liu, Can Zhong, Rongrong Zhou, Guangxi Ren, Shuihan Zhang
Comparative analysis of root anatomical structure, chemical components and differentially expressed genes between early bolting and unbolting in Peucedanum praeruptorum Dunn. Genomics 115 (2) (2023)
Maeva Halgrain, Nelly Bernardet, Christelle Hennequet-Antier, Maxwell Hincke, Sophie Réhault-Godbert
RNA-seq analysis of the active chick embryo chorioallantoic membrane reveals genes that encode proteins assigned to ion transport and innate immunity. Genomics 115 (2) (2023)
Xi Yuan, Jiayu Huang, Li Wen, Boris Novakovic, Mark D Kilby, Chao Tong, Hongbo Qi, Richard Saffery, Philip N Baker
Genome-wide DNA methylation analysis of discordant monozygotic twins reveals consistent sites of differential methylation associated with congenital heart disease. Genomics 115 (2) (2023)
Jing Xie, Xueyang Tang, Chufei Xie, Yongqing Wang, Jianhua Huang, Jian Jin, Hao Liu, Can Zhong, Rongrong Zhou, Guangxi Ren, Shuihan Zhang
Comparative analysis of root anatomical structure, chemical components and differentially expressed genes between early bolting and unbolting in Peucedanum praeruptorum Dunn. Genomics 115 (2) (2023)
Huiyin Deng, Jiuyi Li, Abid Ali Shah, Lite Ge, Wen Ouyang
Comprehensive in-silico analysis of deleterious SNPs in APOC2 and APOA5 and their differential expression in cancer and cardiovascular diseases conditions. Genomics 115 (2) (2023)
Huiyin Deng, Jiuyi Li, Abid Ali Shah, Lite Ge, Wen Ouyang
Comprehensive in-silico analysis of deleterious SNPs in APOC2 and APOA5 and their differential expression in cancer and cardiovascular diseases conditions. Genomics 115 (2) (2023)
Li Jiang, Heng Zhu, Jingyi Wei, Lei Jiang, Yan Li, Ruichao Li, Zhiqiang Wang, Mianzhi Wang
Enterobacteriaceae genome-wide analysis reveals roles for P1-like phage-plasmids in transmission of mcr-1, tetX4 and other antibiotic resistance genes. Genomics 115 (2) (2023)
Huiyin Deng, Jiuyi Li, Abid Ali Shah, Lite Ge, Wen Ouyang
Comprehensive in-silico analysis of deleterious SNPs in APOC2 and APOA5 and their differential expression in cancer and cardiovascular diseases conditions. Genomics 115 (2) (2023)

volume 115, number 3, 2023

Zachary Johnson, Xiguang Xu, Yu Lin, Hehuang Xie
Dynamics of RNA m 5 C modification during brain development. Genomics 115 (3) (2023)
Shanglin Wang, Rong Fan, Huayu Gao, Xiaoli Ma, Yufei Wu, Yuanxin Xing, Yunshan Wang, Yanfei Jia
STAT5A modulates gastric cancer progression via upregulation of CD44. Genomics 115 (3) (2023)
Muhammad Kashif, Yimeng Sang, Shuming Mo, Saif Ur Rehman, Sohail Khan, Muhammad Rafiullah Khan, Sheng He, Chengjian Jiang
Deciphering the biodesulfurization pathway employing marine mangrove Bacillus aryabhattai strain NM1-A2 according to whole genome sequencing and transcriptome analyses. Genomics 115 (3) (2023)
Luqi Wang, Bin Chen, Hui Zhou, Barun Mathema, Liang Chen, Xiangchen Li, Yewei Lu, Zhengwei Liu, Xiaomeng Wang, Weibing Wang
Emergence and evolution of drug-resistant Mycobacterium tuberculosis in eastern China: A six-year prospective study. Genomics 115 (3) (2023)
Golam Rbbani, Artem Nedoluzhko, Prabhugouda Siriyappagouder, Fedor Sharko, Jorge Galindo-Villegas, Joost A M Raeymaekers, Rajesh Joshi, Jorge M O Fernandes
The novel circular RNA CircMef2c is positively associated with muscle growth in Nile tilapia. Genomics 115 (3) (2023)
Huaxiang Zhao, Qing He, Xiantao Wu, Xuqin Liang, Yuhua Jiao, Yue Zhang, Shanying Bao, Linping Xu, Yuxia Hou, Xuechen Zhu, Yi Ding
Identification of rare loss-of-function variants in FAM3B associated with non-syndromic orofacial clefts. Genomics 115 (3) (2023)
Zhelin Li, Xianrui Wu, Shuyue Chen, Jiadong Zhong, Xiaohui Qiu, Julius K S K Kpegah, Ke Shi, Liu Can, Xiangyan Zhang, Mingzhu Yin, Huiqing Xie, Juan Su, Jianda Zhou
Identification of CRKL as an oncogenic biomarker for prognosis and immunotherapy in melanoma, and its potential molecular mechanism. Genomics 115 (3) (2023)
Søren B Hansen, Davide Bozzi, Sarah S T Mak, Cecilie G Clausen, Tue K Nielsen, Miyako Kodama, Lars H Hansen, M Thomas P Gilbert, Morten T Limborg
Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition. Genomics 115 (3) (2023)
Golam Rbbani, Artem Nedoluzhko, Prabhugouda Siriyappagouder, Fedor Sharko, Jorge Galindo-Villegas, Joost A M Raeymaekers, Rajesh Joshi, Jorge M O Fernandes
The novel circular RNA CircMef2c is positively associated with muscle growth in Nile tilapia. Genomics 115 (3) (2023)
Christopher J Giacoletto, Ronald Benjamin, Hong-Wen Deng, Jerome I Rotter, Martin R Schiller
Most synonymous allelic variants in HIV tat are not silent. Genomics 115 (3) (2023)
Xuezheng Xu, Yikun Ju, Xueheng Zhao, Pu Yang, Fang Zhu, Bairong Fang
SMG7-AS1 as a prognostic biomarker and predictor of immunotherapy responses for skin cutaneous melanoma. Genomics 115 (3) (2023)
Carlo C Lazado, Marianne Iversen, Arvind Y M Sundaram
Comparative basal transcriptome profiles of the olfactory rosette and gills of Atlantic salmon (Salmo salar) unveil shared and distinct immunological features. Genomics 115 (3) (2023)
Linyao Zhao, Congkuan Song, Yong Li, Fanen Yuan, Qingyu Zhao, Huimin Dong, Baohui Liu
BZW1 as an oncogene is associated with patient prognosis and the immune microenvironment in glioma. Genomics 115 (3) (2023)
Hanbin Lin, Xiaoyue Luan, Caihui Chen, Xue Gong, Xiuqi Li, Huihu Li, Zhaoxiang Wu, Qiaoli Liu, Meng Xu, Yongda Zhong
A systematic genome-wide analysis and screening of the NAC family genes related to wood formation in Cinnamomum camphora. Genomics 115 (3) (2023)
Zachary Johnson, Xiguang Xu, Yu Lin, Hehuang Xie
Dynamics of RNA m 5 C modification during brain development. Genomics 115 (3) (2023)
He Ren, Xin Liu, Qiao Xu, Wanjing Li, Na Zhao
Interleukin-35 expression promotes hepatocellular carcinogenesis by inducing γδ T-cell exhaustion. Genomics 115 (3) (2023)
Linan Bao, Yang Chu, Hui Kang
SNAI1-activated long non-coding RNA LINC01711 promotes hepatic fibrosis cell proliferation and migration by regulating XYLT1. Genomics 115 (3) (2023)
Shun Ke, Jing Wang, Jun Lu, Minghao Fang, Ruichao Li
Long intergenic non-protein coding RNA 00858 participates in the occurrence and development of esophageal squamous cell carcinoma through the activation of the FTO-m6A-MYC axis by recruiting ZNF184. Genomics 115 (3) (2023)
Shun Ke, Jing Wang, Jun Lu, Minghao Fang, Ruichao Li
Long intergenic non-protein coding RNA 00858 participates in the occurrence and development of esophageal squamous cell carcinoma through the activation of the FTO-m6A-MYC axis by recruiting ZNF184. Genomics 115 (3) (2023)

volume 115, number 5, 2023

G Paul H van Heusden
RNAseq analysis of mutants in coding and non-coding transcription of phosphate genes in the yeast Saccharomyces cerevisiae. Genomics 115 (5) (2023)

volume 115, number 6, 2023

Alejandro P Gutierrez, Sarah-Louise Counter Selly, Samuel M Pountney, John B Taggart, Panagiotis Kokkinias, Thomas Cavrois-Rogacki, Eduardo Jimenez Fernandez, Herve Migaud, Ingrid Lein, Andrew Davie, Michaël Bekaert
Development of genomic markers associated to growth-related traits and sex determination in lumpfish (Cyclopterus lumpus). Genomics 115 (6) (2023)