Genomics

Publications

volume 116, number 4, 2024

Mengli Cao, Lin Xiong, Xingdong Wang, Shaoke Guo, Liyan Hu, Yandong Kang, Xiaoyu Wu, Pengjia Bao, Min Chu, Chunnian Liang, Jie Pei, Xian Guo
Comprehensive analysis of differentially expressed mRNAs, circRNAs, and miRNAs and their ceRNA network in the testis of cattle-yak, yak, and cattle. Genomics 116 (4) (2024)
Yuan Jiang, Weiwei Wang, Faqing Tang, Wei Zhang, Sheng Chen, Xiumei Gu, Ping Chen, Xiaoya Xu, Baoning Nian, Zhikuan Li, Chunzhu Chen, Hanbing Yin, Linlin Su, Honghou Sun, Wei Chen, Dadong Zhang, Yuejin Li
Identifying MiR-140-3p as a stable internal reference to normalize MicroRNA qRT-PCR levels of plasma small extracellular vesicles in lung cancer patients. Genomics 116 (4) (2024)

volume 116, number 5, 2024

Xinglong Li, Zhanzhi Meng, Yongliang Hua, Zihao Li, Bing Yin, Baolin Qian, Hongjun Yu, Zhongyu Li, Yongzhi Zhou, Zhigang Feng, Shounan Lu, Shanjia Ke, Miaoyu Bai, Yao Fu, Yong Ma
Identification and validation of ferroptosis-related hub genes and immune infiltration in liver ischemia-reperfusion injury. Genomics 116 (5) (2024)
Eric A Lewallen, Da Liu, Jake Karwoski, Wilson Y Szeto, Andre J van Wijnen, Krzysztof Laudanski
Transcriptomic responses of peripheral blood leukocytes to cardiac surgery after acute inflammation, and three months recovery. Genomics 116 (5) (2024)
Liwei Chu, Qianhui Du, Siyu Zuo, Guiting Liu, Hexin Wang, Guoling Liu, Lina Zhao, Guohui Xu
Assembly and comparative analysis of the complete mitochondrial genome of Vaccinium carlesii Dunn. Genomics 116 (5) (2024)
Huifang Song, Mingyang Wang, Jie Shen, Xi Wang, Cheng Qin, Peipei Wei, Yaojun Niu, Jiahong Ren, Xiaoxue Pan, Ake Liu
Physiological and transcriptomic profiles reveal key regulatory pathways involved in cold resistance in sunflower seedlings. Genomics 116 (5) (2024)
Zexi Cai, Laura Skrubbeltrang Hansen, Stine Frey Laursen, Hanne Marie Nielsen, Simon Bahrndorff, Jeffery K Tomberlin, Torsten Nygaard Kristensen, Jesper Givskov Sørensen, Goutam Sahana
Whole-genome sequencing of two captive black soldier fly populations: Implications for commercial production. Genomics 116 (5) (2024)
Lei Yin, Anqi Duan, Wei Zhang, Bin Li, Teng Zhao, Xiaoya Xu, Lixue Yang, Baoning Nian, Kai Lu, Sheng Chen, Zhikuan Li, Jian Liu, Qiaonan Duan, Dongyu Liu, Hao Chen, Longjiu Cui, Yanxin Chang, Yue Kuang, Dadong Zhang, Xiang Wang, Yongjie Zhang
Identification of whole-genome mutations and structural variations of bile cell-free DNA in cholangiocarcinoma. Genomics 116 (5) (2024)
Chunli Hu, Mengli Yang, Xue Feng, Shuzhe Wang, Yanfen Ma, Yun Ma
miR-10167-3p targets TCF7L1 to inhibit bovine adipocyte differentiation and promote bovine adipocyte proliferation. Genomics 116 (5) (2024)
Wufeng Li, null LiLi, Xi Wang
Transcriptomic analysis of different intramuscular fat contents on the flavor of the longissimus dorsi tissues from Guangling donkey. Genomics 116 (5) (2024)
Yimeng Nie, Xuanzeng Liu, Lina Zhao, Yuan Huang
Repetitive element expansions contribute to genome size gigantism in Pamphagidae: A comparative study (Orthoptera, Acridoidea). Genomics 116 (5) (2024)
Lei Shi, Ziwen Zhang, Yuan Huang, Yabing Zheng
FOXCUT regulates the malignant phenotype of triple-negative breast Cancer via the miR-337-3p/ANP32E Axis. Genomics 116 (5) (2024)
Nicolò Gualandi, Martina Minisini, Alessio Bertozzo, Claudio Brancolini
Dissecting transposable elements and endogenous retroviruses upregulation by HDAC inhibitors in leiomyosarcoma cells: Implications for the interferon response. Genomics 116 (5) (2024)
Xiaoyao Chang, Xiaoyan Zhang, Xiumei Huang, Zhongren Yang, Fenglan Zhang
Transcriptome and metabolome analysis of the developmental changes in Cynanchum thesioides anther. Genomics 116 (5) (2024)
Ti-Qiang Chen, Xiao-Lan Xu, Chi Yang, Lin Yang, Zheng-He Ying, Xiao-Kun Shi, Meng-Guang Ding
Comparative genomics reveals ample evidence to Ganoderma sinense cultivars for molecular identification and new FIP exploration. Genomics 116 (5) (2024)
Peng Wang, Miao Ma, Haichun Chen, Haiyan Sun, Di Wu, Qiao He, Danlong Jing, Qigao Guo, Jiangbo Dang, Guolu Liang
Global analysis of gene expression in response to double trisomy loquat (Eriobotrya japonica). Genomics 116 (5) (2024)
Zhaohua He, Hongxian Sun, Fangfang Zhao, Longxia Ma, Jiqing Wang, Xiu Liu, Mingna Li, Zhiyun Hao, Shaobin Li
MicroRNA expression profiles reveal wool development and fineness regulation in Gansu alpine fine-wool sheep. Genomics 116 (5) (2024)
Hanyi Yao, Zixi Xiao, Shufang Liu, Xingjian Gao, Zehong Wu, Dongping Li, Zhangqing Yi, Haojie Zhou, Weizhi Zhang
Screening of novel disease genes of sepsis-induced myocardial Disfunction by RNA sequencing and bioinformatics analysis. Genomics 116 (5) (2024)
Alberto Bugallo, Mónica Segurado
Unraveling the complexity of asymmetric DNA replication: Advancements in ribonucleotide mapping techniques and beyond. Genomics 116 (5) (2024)
Surjeet Kumar Arya, Douglas A Harrison, Subba Reddy Palli
Deciphering cellular heterogeneity in Spodoptera frugiperda midgut cell line through single cell RNA sequencing. Genomics 116 (5) (2024)
Zhenguo Hu, Yuezhou Yao, Feiyue Chen, Luya Feng, Zian Yuan, Junhao Deng, Lang Huang, Yulong Yin, Xiongzhuo Tang
Integrated analyses of the intestinal microbiome and transcriptome in Ningxiang piglets. Genomics 116 (5) (2024)
Sachiko Ohori, Hironao Numabe, Satomi Mitsuhashi, Naomi Tsuchida, Yuri Uchiyama, Eriko Koshimizu, Kohei Hamanaka, Kazuharu Misawa, Satoko Miyatake, Takeshi Mizuguchi, Atsushi Fujita, Naomichi Matsumoto
Complex chromosomal 6q rearrangements revealed by combined long-molecule genomics technologies. Genomics 116 (5) (2024)
Hu Zhao, Miaomiao Ge, Fengzhe Zhang, Didi Du, Zilu Zhao, Cheng Shen, Qingping Hao, Min Xiao, Xiaopu Shi, Juan Wang, Mingqin Fan
Integrated morphological, physiological and transcriptomic analyses reveal the responses of Toona sinensis seedlings to low-nitrogen stress. Genomics 116 (5) (2024)
Ying De, Weihong Yan, Fengqin Gao, Huaibin Mu
Unraveling the signaling pathways of phytohormones underlying salt tolerance in Elymus sibiricus: A transcriptomic and metabolomic approach. Genomics 116 (5) (2024)
Yujiao Zhang, Haiyan Zhang, Xinjie Zheng, Yi Hou, Xiaoli Chang, Lili Zhang, Ying Wang, Shaozong Chen
Identification of differentially expressed genes in the medial prefrontal cortex of rats subjected to chronic unpredictable mild stress and treated with electroacupuncture. Genomics 116 (5) (2024)
Ming-Yue Li, Ya-Hui Liu, Feng Wei, Ping Zhang, Xiao-Dong Sun, Meng Wang, Xiao-Hong Du, Jun-Feng Ye, Wei Qiu, Xiao-Ju Shi, Bai Ji, Ying-Chao Wang, Chao Jiang, Wen-Gang Chai, Bo Huang, Xing-Kai Liu, Qing-Min Chen, Yu Fu, Xin-Tong Hu, Li-Guo Chen, Jia-Xue He, Kai-Yuan Chai, Zhao-Ming Gou, Tian Yang, Guang-Yi Wang, Yan-Fang Jiang, Zhong-Qi Fan, Guo-Yue Lv
Identification of prognostic biomarkers for cholangiocarcinoma by combined analysis of molecular characteristics of clinical MVI subtypes and molecular subtypes. Genomics 116 (5) (2024)
Xue Jiang, Qian Wang, Jingtian Yang, Baoguo Du, Zhaodi Yuan, Hongyi Liu, Jiayi Yuan, Yang Zhang, Liao Chen, Lei Liu
Deep integration of metabolome and transcriptome characterizes alkaloid metabolism in Houttuynia cordata. Genomics 116 (5) (2024)
Ojong Tabi Ojong Besong, Ji Sun Koo, Huiping Zhang
Brain lncRNA-mRNA co-expression regulatory networks and alcohol use disorder. Genomics 116 (5) (2024)
Feng Xiao, Yayan Zhu, Yao Yang, Xiurong Wang, Xueyan Jian, Yang Zhao
Comparative metabolomics and transcriptomics analyses provide insights into branching changes induced by heterografting in Pinus massoniana seedlings. Genomics 116 (5) (2024)
Junfan Pan, Yuan Zhang, Liu He, Yue Wu, Weijin Xiao, Jing Zhang, Yiquan Xu
STRIP2 is regulated by the transcription factor Sp1 and promotes lung adenocarcinoma progression via activating the PI3K/AKT/mTOR/MYC signaling pathway. Genomics 116 (5) (2024)
Yan Zhao, Jiankang Wang, Qing Xiao, Guihua Liu, Yongjie Li, Xingping Zha, Zhangjiang He, Jichuan Kang
New insights into decoding the lifestyle of endophytic Fusarium lateritium Fl617 via comparing genomes. Genomics 116 (5) (2024)
Weijia Wen, Li Yuan, Xueyuan Zhao, Yan Jia, Linna Chen, Hongye Jiang, Wei Wang, Chunyu Zhang, Shuzhong Yao
Differentially expressed circular RNA profiles and comprehensive analysis of circRNA-miRNA-mRNA regulatory network in microsatellite instability-high endometrial cancer. Genomics 116 (5) (2024)
Yangguang Liu, Fan Xie, Huibin Zhang, Haibo Ye, Haoyu Wen, Mengyao Qiu, Yueyun Ding, Xianrui Zheng, Zongjun Yin, Xiaodong Zhang
Preliminary construction of non-coding RNAs and ceRNA regulatory networks mediated by exosomes in porcine follicular fluid. Genomics 116 (5) (2024)
Lingying Kong, Chao Yuan, Tingting Guo, Lixia Sun, Jianbin Liu, Zengkui Lu
Inhibitor of Myom3 inhibits proliferation and promotes differentiation of sheep myoblasts. Genomics 116 (5) (2024)
Daniel Martins, Maryam Abbasi, Conceição Egas, Joel P Arrais
Enhancing schizophrenia phenotype prediction from genotype data through knowledge-driven deep neural network models. Genomics 116 (5) (2024)
Da Qian, Jie Qiu, Yadan Xu, Weimin Hong, Chaoqi He, Dandan Guan, Qinghui Zheng, Xiaozhen Liu, Chaoshen Wu, Xuli Meng, Hongchao Tang
Whole transcriptome sequencing indicated the Anti-tumor immunity of NLRP3 in breast cancer. Genomics 116 (5) (2024)
Meilan Pan, Xiaofeng Luo, Zhenzhen Zhang, Jingjing Li, Khuram Shahzad, Zhaxi Danba, Gongbu Caiwang, Wangmu Chilie, Xiaoying Chen, Wangsheng Zhao
The expression spectrum of yak epididymal epithelial cells reveals the functional diversity of caput, corpus and cauda regions. Genomics 116 (5) (2024)
Wei Yang, Zhou Yang, Lei Yang, Zheng Li, Zhaowu Zhang, Tong Wei, Renliang Huang, Guotian Li
Genomic and transcriptomic analyses of the elite rice variety Huizhan provide insight into disease resistance and heat tolerance. Genomics 116 (5) (2024)
Weiming Xie, Zhaomin Yao, Yizhe Yuan, Jingwei Too, Fei Li, Hongyu Wang, Ying Zhan, Xiaodan Wu, Zhiguo Wang, Guoxu Zhang
W2V-repeated index: Prediction of enhancers and their strength based on repeated fragments. Genomics 116 (5) (2024)
Xu Lin, Ruhua Zhao, Yu Bin, Ronghua Huo, Gang Xue, Jingfang Wu
TIMP1 promotes thyroid cancer cell progression through macrophage phenotypic polarization via the PI3K/AKT signaling pathway. Genomics 116 (5) (2024)
Weihao Zhang, Yongjie Xie, Ziyun Liu, Jie Zhang, Bo Ni, Wei Gao, Wenge Xing, Yaoyao Zhou, Tongguo Si
The aminophospholipid transporter, ATP8B3, as a potential biomarker and target for enhancing the therapeutic effect of PD-L1 blockade in colon adenocarcinoma. Genomics 116 (5) (2024)
Haoran Wang, Zujing Yang, Shenhai Wang, Ang Zhao, Hao Wang, Zhi Liu, Mingyi Sui, Lijingjing Bao, Qifan Zeng, Jingjie Hu, Zhenmin Bao, Xiaoting Huang
Genome-wide association analysis reveals the genetic basis of thermal tolerance in dwarf surf clam Mulinia lateralis. Genomics 116 (5) (2024)
Kai Qu, Dan Liu, Limin Sun, Meng Li, Tiantian Xia, Weixia Sun, Yufei Xia
De novo assembly and comprehensive analysis of the mitochondrial genome of Taxus wallichiana reveals different repeats mediate recombination to generate multiple conformations. Genomics 116 (5) (2024)
Yu-Jie Chen, Qiao Liu, Yong-Jing Zhang, Zhi-Li Jiang, Hai-Lan Fu, Hui Wu, Ming-Jie Liu, Ji-Hong Jiang, Lu-Dan Li
Whole-genome sequence of Sclerotium delphinii, a pathogenic fungus of Dendrobium officinale southern blight. Genomics 116 (5) (2024)
Zhengchen Guo, Qi Lin, Yanan Chang, Yuanyuan An, Hua Duan
Comprehensive analysis of circRNA-miRNA-mRNA regulatory network and novel potential biomarkers in eutopic endometrium of adenomyosis. Genomics 116 (5) (2024)
Mirko Ronzio, Andrea Bernardini, Valentina Taglietti, Michele Ceribelli, Giacomo Donati, Alberto Gallo, Giulio Pavesi, Paolo Dellabona, Giulia Casorati, Graziella Messina, Roberto Mantovani, Diletta Dolfini
Genomic binding of NF-Y in mouse and human cells. Genomics 116 (5) (2024)
Lei Ye, Lingzi Zhang, Xin Li, Yu Huang, Bo Zhang, Xuezhen Yang, Wei Tan, Xiaolin Li, Xiaoping Zhang
De novo genome assembly and functional insights of the first commercial pink Auricularia cornea. Genomics 116 (5) (2024)
Zhenzhen Zhang, Xin Zhang, Tingting Zhang, Jingjing Li, Cuomu Renqing, Zhaxi Baijiu, Sangzhu Baima, Wangjie Zhaxi, Yuzhen Nima, Wangsheng Zhao, Tianzeng Song
Differential gene expression and gut microbiota composition in low-altitude and high-altitude goats. Genomics 116 (5) (2024)
Qiu-Ju Dong, Xiao-Yu Xu, Cai-Xia Fan, Ji-Ping Xiao
Transcriptome and metabolome analyses reveal chlorogenic acid accumulation in pigmented potatoes at different altitudes. Genomics 116 (5) (2024)
Lin Yue, Zengkui Lu, Tingting Guo, Jianbin Liu, Bohui Yang, Chao Yuan
Key genes and metabolites that regulate wool fibre diameter identified by combined transcriptome and metabolome analysis. Genomics 116 (5) (2024)