Eugene V Koonin (E Koonin, Eugene Koonin)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 266

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

mBio

Nature communications

bioRxiv : the preprint server for biology

NIH

This page only lists publications with an associated author ORCID identifier.

Affiliation History

NIH

United States

Senior Investigator :: National Center for Biotechnology Information

Publications

Kira S Makarova, Victor Tobiasson, Yuri I Wolf, Zhongyi Lu, Yang Liu, Siyu Zhang, Mart Krupovic, Yuhan Huang, Eugene V Koonin
Diversity, origin, and evolution of the ESCRT systems. mBio (2024)
Anastasiia Chaban, Leonid Minakhin, Ekaterina Goldobina, Brain Bae, Yue Hao, Sergei Borukhov, Leena Putzeys, Maarten Boon, Florian Kabinger, Rob Lavigne, Kira S Makarova, Eugene V Koonin, Satish K Nair, Shunsuke Tagami, Konstantin V Severinov, Maria L Sokolova
Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail. Nature communications 15 (1) (2024)
Dmitry A Biba, Yuri I Wolf, Eugene V Koonin, Nash D Rochman
Balance between asymmetric allocation and repair of somatic damage in unicellular life forms as an ancient form of r/K selection. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Syun-Ichi Urayama, Akihito Fukudome, Miho Hirai, Tomoyo Okumura, Yosuke Nishimura, Yoshihiro Takaki, Norio Kurosawa, Eugene V Koonin, Mart Krupovic, Takuro Nunoura
Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan. Nature microbiology 9 (2) (2024)
Roman Kogay, Yuri I Wolf, Eugene V Koonin
Defense systems and horizontal gene transfer in bacteria. bioRxiv : the preprint server for biology (2024)
Mart Krupovic, J Thomas Beatty, Matthias G Fischer, Eugene V Koonin
Natural history of eukaryotic DNA viruses with double jelly-roll major capsid proteins. Proceedings of the National Academy of Sciences of the United States of America 121 (23) (2024)
Sanasar G Babajanyan, Sofya K Garushyants, Yuri I Wolf, Eugene V Koonin
Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model. BMC biology 22 (1) (2024)
Ishita Jain, Matvey Kolesnik, Konstantin Kuznedelov, Leonid Minakhin, Natalia Morozova, Anna A Shiriaeva, Alexandr Kirillov, Sofia Medvedeva, Alexei Livenskyi, Laura Kazieva, Kira S Makarova, Eugene V Koonin, Sergei Borukhov, Konstantin V Severinov, Ekaterina Semenova
tRNA anticodon cleavage by target-activated CRISPR-Cas13a effector. Science advances 10 (17) (2024)
Eugene V Koonin, J Thomas Beatty, Valerian V Dolja, Mart Krupovic
Megataxonomy and global ecology of the virosphere. The ISME journal 18 (1) (2024)
Shu-Kun Tang, Xiao-Yang Zhi, Yao Zhang, Kira S Makarova, Bing-Bing Liu, Guo-Song Zheng, Zhen-Peng Zhang, Hua-Jun Zheng, Yuri I Wolf, Yu-Rong Zhao, Song-Hao Jiang, Xi-Ming Chen, En-Yuan Li, Tao Zhang, Pei-Ru Chen, Yu-Zhou Feng, Ming-Xian Xiang, Zhi-Qian Lin, Jia-Hui Shi, Cheng Chang, Xue Zhang, Rui Li, Kai Lou, Yun Wang, Lei Chang, Min Yin, Ling-Ling Yang, Hui-Ying Gao, Zhong-Kai Zhang, Tian-Shen Tao, Tong-Wei Guan, Fu-Chu He, Yin-Hua Lu, Heng-Lin Cui, Eugene V Koonin, Guo-Ping Zhao, Ping Xu
Addendum: Cellular differentiation into hyphae and spores in halophilic archaea. Nature communications 15 (1) (2024)
Roman Kogay, Yuri I Wolf, Eugene V Koonin
Defence systems and horizontal gene transfer in bacteria. Environmental microbiology 26 (4) (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: small relatives of giant viruses. mBio 15 (7) (2024)
Ishita Jain, Matvey Kolesnik, Konstantin Kuznedelov, Leonid Minakhin, Natalia Morozova, Anna A Shiriaeva, Alexandr Kirillov, Sofia Medvedeva, Alexei Livenskyi, Laura Kazieva, Kira S Makarova, Eugene V Koonin, Sergei Borukhov, Konstantin V Severinov, Ekaterina Semenova
tRNA anticodon cleavage by target-activated CRISPR-Cas13a effector. Science advances 10 (17) (2024)
Ryan T Bell, Harutyun Sahakyan, Kira S Makarova, Yuri I Wolf, Eugene V Koonin
CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA. eLife 13 (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: Small Relatives of Giant Viruses. bioRxiv : the preprint server for biology (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: Small Relatives of Giant Viruses. bioRxiv : the preprint server for biology (2024)
Roman Kogay, Yuri I Wolf, Eugene V Koonin
Defence systems and horizontal gene transfer in bacteria. Environmental microbiology 26 (4) (2024)
Mart Krupovic, J Thomas Beatty, Matthias G Fischer, Eugene V Koonin
Natural history of eukaryotic DNA viruses with double jelly-roll major capsid proteins. Proceedings of the National Academy of Sciences of the United States of America 121 (23) (2024)
Yuvaraj Bhoobalan-Chitty, Shuanshuan Xu, Martínez-Alvarez Laura, Svetlana Karamycheva, Kira S Makarova, Eugene V Koonin, Peng Xu
Regulatory sequence-based discovery of anti-defense genes in archaeal viruses. Nature communications 15 (1) (2024)
Sanasar G Babajanyan, Sofya K Garushyants, Yuri I Wolf, Eugene V Koonin
Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model. BMC biology 22 (1) (2024)
Kira S Makarova, Victor Tobiasson, Yuri I Wolf, Zhongyi Lu, Yang Liu, Siyu Zhang, Mart Krupovic, Yuhan Huang, Eugene V Koonin
Diversity, origin, and evolution of the ESCRT systems. mBio 15 (3) (2024)
Kira S Makarova, Victor Tobiasson, Yuri I Wolf, Zhongyi Lu, Yang Liu, Siyu Zhang, Mart Krupovic, Meng Li, Eugene V Koonin
Diversity, Origin and Evolution of the ESCRT Systems. bioRxiv : the preprint server for biology (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: Small Relatives of Giant Viruses. bioRxiv : the preprint server for biology (2024)
Shu-Kun Tang, Xiao-Yang Zhi, Yao Zhang, Kira S Makarova, Bing-Bing Liu, Guo-Song Zheng, Zhen-Peng Zhang, Hua-Jun Zheng, Yuri I Wolf, Yu-Rong Zhao, Song-Hao Jiang, Xi-Ming Chen, En-Yuan Li, Tao Zhang, Pei-Ru Chen, Yu-Zhou Feng, Ming-Xian Xiang, Zhi-Qian Lin, Jia-Hui Shi, Cheng Chang, Xue Zhang, Rui Li, Kai Lou, Yun Wang, Lei Chang, Min Yin, Ling-Ling Yang, Hui-Ying Gao, Zhong-Kai Zhang, Tian-Shen Tao, Tong-Wei Guan, Fu-Chu He, Yin-Hua Lu, Heng-Lin Cui, Eugene V Koonin, Guo-Ping Zhao, Ping Xu
Addendum: Cellular differentiation into hyphae and spores in halophilic archaea. Nature communications 15 (1) (2024)
Shu-Kun Tang, Xiao-Yang Zhi, Yao Zhang, Kira S Makarova, Bing-Bing Liu, Guo-Song Zheng, Zhen-Peng Zhang, Hua-Jun Zheng, Yuri I Wolf, Yu-Rong Zhao, Song-Hao Jiang, Xi-Ming Chen, En-Yuan Li, Tao Zhang, Pei-Ru Chen, Yu-Zhou Feng, Ming-Xian Xiang, Zhi-Qian Lin, Jia-Hui Shi, Cheng Chang, Xue Zhang, Rui Li, Kai Lou, Yun Wang, Lei Chang, Min Yin, Ling-Ling Yang, Hui-Ying Gao, Zhong-Kai Zhang, Tian-Shen Tao, Tong-Wei Guan, Fu-Chu He, Yin-Hua Lu, Heng-Lin Cui, Eugene V Koonin, Guo-Ping Zhao, Ping Xu
Addendum: Cellular differentiation into hyphae and spores in halophilic archaea. Nature communications 15 (1) (2024)
Ryan T Bell, Harutyun Sahakyan, Kira S Makarova, Yuri I Wolf, Eugene V Koonin
CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA. eLife 13 (2024)
Anastasiia Chaban, Leonid Minakhin, Ekaterina Goldobina, Brain Bae, Yue Hao, Sergei Borukhov, Leena Putzeys, Maarten Boon, Florian Kabinger, Rob Lavigne, Kira S Makarova, Eugene V Koonin, Satish K Nair, Shunsuke Tagami, Konstantin V Severinov, Maria L Sokolova
Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail. Nature communications 15 (1) (2024)
Sanasar G Babajanyan, Sofya K Garushyants, Yuri I Wolf, Eugene V Koonin
Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model. BMC biology 22 (1) (2024)
Dmitry A Biba, Yuri I Wolf, Eugene V Koonin, Nash D Rochman
Balance between asymmetric allocation and repair of somatic damage in unicellular life forms as an ancient form of r/K selection. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Ryan T Bell, Harutyun Sahakyan, Kira S Makarova, Yuri I Wolf, Eugene V Koonin
CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA. eLife 13 (2024)
Yuvaraj Bhoobalan-Chitty, Shuanshuan Xu, Martínez-Alvarez Laura, Svetlana Karamycheva, Kira S Makarova, Eugene V Koonin, Peng Xu
Regulatory sequence-based discovery of anti-defense genes in archaeal viruses. Nature communications 15 (1) (2024)
Sanasar G Babajanyan, Sofya K Garushyants, Yuri I Wolf, Eugene V Koonin
Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model. bioRxiv : the preprint server for biology (2024)
Eugene V Koonin, Matthias G Fischer, J Thomas Beatty, Mart Krupovic
The polinton-like supergroup of viruses: evolution, molecular biology, and taxonomy. Microbiology and molecular biology reviews : MMBR (2024)
Eugene V Koonin
Circular RNAs from linear viral RNA genomes: A distinct dimension in the virus world. Proceedings of the National Academy of Sciences of the United States of America 121 (8) (2024)
Danyil Grybchuk, Arnau Galan, Donnamae Klocek, Diego H Macedo, Yuri I Wolf, Jan Votypka, Anzhelika Butenko, Julius Lukeš, Uri Neri, Kristína Záhonová, Alexei Yu Kostygov, Eugene V Koonin, Vyacheslav Yurchenko
Identification of diverse RNA viruses in Obscuromonas flagellates (Euglenozoa: Trypanosomatidae: Blastocrithidiinae). Virus evolution 10 (1) (2024)
Ryan T Bell, Harutyun Sahakyan, Kira S Makarova, Yuri I Wolf, Eugene V Koonin
CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA. eLife 13 (2024)
Sanasar G Babajanyan, Sofya K Garushyants, Yuri I Wolf, Eugene V Koonin
Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model. bioRxiv : the preprint server for biology (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: Small Relatives of Giant Viruses. bioRxiv : the preprint server for biology (2024)
Ishita Jain, Matvey Kolesnik, Konstantin Kuznedelov, Leonid Minakhin, Natalia Morozova, Anna A Shiriaeva, Alexandr Kirillov, Sofia Medvedeva, Alexei Livenskyi, Laura Kazieva, Kira S Makarova, Eugene V Koonin, Sergei Borukhov, Konstantin V Severinov, Ekaterina Semenova
tRNA anticodon cleavage by target-activated CRISPR-Cas13a effector. Science advances 10 (17) (2024)
Kira S Makarova, Victor Tobiasson, Yuri I Wolf, Zhongyi Lu, Yang Liu, Siyu Zhang, Mart Krupovic, Yuhan Huang, Eugene V Koonin
Diversity, origin, and evolution of the ESCRT systems. mBio 15 (3) (2024)
Eugene V Koonin, Matthias G Fischer, J Thomas Beatty, Mart Krupovic
The polinton-like supergroup of viruses: evolution, molecular biology, and taxonomy. Microbiology and molecular biology reviews : MMBR (2024)
Kira S Makarova, Victor Tobiasson, Yuri I Wolf, Zhongyi Lu, Yang Liu, Siyu Zhang, Mart Krupovic, Yuhan Huang, Eugene V Koonin
Diversity, origin, and evolution of the ESCRT systems. mBio 15 (3) (2024)
Yuri I Wolf, Ilya V Schurov, Kira S Makarova, Mikhail I Katsnelson, Eugene V Koonin
Long range segmentation of prokaryotic genomes by gene age and functionality. Nucleic acids research (2024)
Yuri I Wolf, Ilya V Schurov, Kira S Makarova, Mikhail I Katsnelson, Eugene V Koonin
Long range segmentation of prokaryotic genomes by gene age and functionality. Nucleic acids research (2024)
Dmitry A Biba, Yuri I Wolf, Eugene V Koonin, Nash D Rochman
Balance between asymmetric allocation and repair of somatic damage in unicellular life forms as an ancient form of r/K selection. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Kira S Makarova, Changyi Zhang, Yuri I Wolf, Svetlana Karamycheva, Rachel J Whitaker, Eugene V Koonin
Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea. mBio 15 (2) (2024)
Kira S Makarova, Victor Tobiasson, Yuri I Wolf, Zhongyi Lu, Yang Liu, Siyu Zhang, Mart Krupovic, Yuhan Huang, Eugene V Koonin
Diversity, origin, and evolution of the ESCRT systems. mBio 15 (3) (2024)
Shan Zhao, Kira S Makarova, Wenchao Zheng, Le Zhan, Qianqian Wan, Yafei Liu, Han Gong, Mart Krupovic, Joe Lutkenhaus, Xiangdong Chen, Eugene V Koonin, Shi-Shen Du
Widespread photosynthesis reaction centre barrel proteins are necessary for haloarchaeal cell division. Nature microbiology 9 (3) (2024)
Kira S Makarova, Changyi Zhang, Yuri I Wolf, Svetlana Karamycheva, Rachel J Whitaker, Eugene V Koonin
Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea. mBio 15 (2) (2024)
Shu-Kun Tang, Xiao-Yang Zhi, Yao Zhang, Kira S Makarova, Bing-Bing Liu, Guo-Song Zheng, Zhen-Peng Zhang, Hua-Jun Zheng, Yuri I Wolf, Yu-Rong Zhao, Song-Hao Jiang, Xi-Ming Chen, En-Yuan Li, Tao Zhang, Pei-Ru Chen, Yu-Zhou Feng, Ming-Xian Xiang, Zhi-Qian Lin, Jia-Hui Shi, Cheng Chang, Xue Zhang, Rui Li, Kai Lou, Yun Wang, Lei Chang, Min Yin, Ling-Ling Yang, Hui-Ying Gao, Zhong-Kai Zhang, Tian-Shen Tao, Tong-Wei Guan, Fu-Chu He, Yin-Hua Lu, Heng-Lin Cui, Eugene V Koonin, Guo-Ping Zhao, Ping Xu
Addendum: Cellular differentiation into hyphae and spores in halophilic archaea. Nature communications 15 (1) (2024)
Yuvaraj Bhoobalan-Chitty, Shuanshuan Xu, Martínez-Alvarez Laura, Svetlana Karamycheva, Kira S Makarova, Eugene V Koonin, Peng Xu
Regulatory sequence-based discovery of anti-defense genes in archaeal viruses. Nature communications 15 (1) (2024)
Dmitry A Biba, Yuri I Wolf, Eugene V Koonin, Nash D Rochman
Balance between asymmetric allocation and repair of somatic damage in unicellular life forms as an ancient form of r/K selection. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Syun-Ichi Urayama, Akihito Fukudome, Miho Hirai, Tomoyo Okumura, Yosuke Nishimura, Yoshihiro Takaki, Norio Kurosawa, Eugene V Koonin, Mart Krupovic, Takuro Nunoura
Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan. Nature microbiology 9 (2) (2024)
Zhongyi Lu, Runyue Xia, Siyu Zhang, Jie Pan, Yang Liu, Yuri I Wolf, Eugene V Koonin, Yuhan Huang
Evolution of optimal growth temperature in Asgard archaea inferred from the temperature dependence of GDP binding to EF-1A. Nature communications 15 (1) (2024)
Yuri I Wolf, Ilya V Schurov, Kira S Makarova, Mikhail I Katsnelson, Eugene V Koonin
Long range segmentation of prokaryotic genomes by gene age and functionality. bioRxiv : the preprint server for biology (2024)
Syun-Ichi Urayama, Akihito Fukudome, Miho Hirai, Tomoyo Okumura, Yosuke Nishimura, Yoshihiro Takaki, Norio Kurosawa, Eugene V Koonin, Mart Krupovic, Takuro Nunoura
Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan. Nature microbiology (2024)
Syun-Ichi Urayama, Akihito Fukudome, Miho Hirai, Tomoyo Okumura, Yosuke Nishimura, Yoshihiro Takaki, Norio Kurosawa, Eugene V Koonin, Mart Krupovic, Takuro Nunoura
Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan. Nature microbiology (2024)
Igor Fesenko, Harutyun Sahakyan, Svetlana A Shabalina, Eugene V Koonin
The Cryptic Bacterial Microproteome. bioRxiv : the preprint server for biology (2024)
Eugene V Koonin
Circular RNAs from linear viral RNA genomes: A distinct dimension in the virus world. Proceedings of the National Academy of Sciences of the United States of America 121 (8) (2024)
Yuri I Wolf, Ilya V Schurov, Kira S Makarova, Mikhail I Katsnelson, Eugene V Koonin
Long range segmentation of prokaryotic genomes by gene age and functionality. bioRxiv : the preprint server for biology (2024)
Mart Krupovic, J Thomas Beatty, Matthias G Fischer, Eugene V Koonin
Natural history of eukaryotic DNA viruses with double jelly-roll major capsid proteins. Proceedings of the National Academy of Sciences of the United States of America 121 (23) (2024)
Roman Kogay, Yuri I Wolf, Eugene V Koonin
Defence systems and horizontal gene transfer in bacteria. Environmental microbiology 26 (4) (2024)
Syun-Ichi Urayama, Akihito Fukudome, Miho Hirai, Tomoyo Okumura, Yosuke Nishimura, Yoshihiro Takaki, Norio Kurosawa, Eugene V Koonin, Mart Krupovic, Takuro Nunoura
Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan. Nature microbiology 9 (2) (2024)
Yuri I Wolf, Ilya V Schurov, Kira S Makarova, Mikhail I Katsnelson, Eugene V Koonin
Long range segmentation of prokaryotic genomes by gene age and functionality. bioRxiv : the preprint server for biology (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: small relatives of giant viruses. mBio 15 (7) (2024)
Mart Krupovic, J Thomas Beatty, Matthias G Fischer, Eugene V Koonin
Natural history of eukaryotic DNA viruses with double jelly-roll major capsid proteins. Proceedings of the National Academy of Sciences of the United States of America 121 (23) (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: Small Relatives of Giant Viruses. bioRxiv : the preprint server for biology (2024)
Shan Zhao, Kira S Makarova, Wenchao Zheng, Le Zhan, Qianqian Wan, Yafei Liu, Han Gong, Mart Krupovic, Joe Lutkenhaus, Xiangdong Chen, Eugene V Koonin, Shi-Shen Du
Widespread photosynthesis reaction centre barrel proteins are necessary for haloarchaeal cell division. Nature microbiology 9 (3) (2024)
Roman Kogay, Yuri I Wolf, Eugene V Koonin
Defence systems and horizontal gene transfer in bacteria. Environmental microbiology 26 (4) (2024)
Eugene V Koonin
Circular RNAs from linear viral RNA genomes: A distinct dimension in the virus world. Proceedings of the National Academy of Sciences of the United States of America 121 (8) (2024)
Eugene V Koonin
Circular RNAs from linear viral RNA genomes: A distinct dimension in the virus world. Proceedings of the National Academy of Sciences of the United States of America 121 (8) (2024)
Igor Fesenko, Harutyun Sahakyan, Svetlana A Shabalina, Eugene V Koonin
The Cryptic Bacterial Microproteome. bioRxiv : the preprint server for biology (2024)
Sanasar G Babajanyan, Sofya K Garushyants, Yuri I Wolf, Eugene V Koonin
Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model. BMC biology 22 (1) (2024)
Zhongyi Lu, Runyue Xia, Siyu Zhang, Jie Pan, Yang Liu, Yuri I Wolf, Eugene V Koonin, Yuhan Huang
Evolution of optimal growth temperature in Asgard archaea inferred from the temperature dependence of GDP binding to EF-1A. Nature communications 15 (1) (2024)
Zhongyi Lu, Runyue Xia, Siyu Zhang, Jie Pan, Yang Liu, Yuri I Wolf, Eugene V Koonin, Yuhan Huang
Evolution of optimal growth temperature in Asgard archaea inferred from the temperature dependence of GDP binding to EF-1A. Nature communications 15 (1) (2024)
Eugene V Koonin, J Thomas Beatty, Valerian V Dolja, Mart Krupovic
Megataxonomy and global ecology of the virosphere. The ISME journal 18 (1) (2024)
Syun-Ichi Urayama, Akihito Fukudome, Miho Hirai, Tomoyo Okumura, Yosuke Nishimura, Yoshihiro Takaki, Norio Kurosawa, Eugene V Koonin, Mart Krupovic, Takuro Nunoura
Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan. Nature microbiology 9 (2) (2024)
Kira S Makarova, Victor Tobiasson, Yuri I Wolf, Zhongyi Lu, Yang Liu, Siyu Zhang, Mart Krupovic, Meng Li, Eugene V Koonin
Diversity, Origin and Evolution of the ESCRT Systems. bioRxiv : the preprint server for biology (2024)
Roman Kogay, Yuri I Wolf, Eugene V Koonin
Defense systems and horizontal gene transfer in bacteria. bioRxiv : the preprint server for biology (2024)
Sanasar G Babajanyan, Sofya K Garushyants, Yuri I Wolf, Eugene V Koonin
Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model. bioRxiv : the preprint server for biology (2024)
Shan Zhao, Kira S Makarova, Wenchao Zheng, Le Zhan, Qianqian Wan, Yafei Liu, Han Gong, Mart Krupovic, Joe Lutkenhaus, Xiangdong Chen, Eugene V Koonin, Shi-Shen Du
Widespread photosynthesis reaction centre barrel proteins are necessary for haloarchaeal cell division. Nature microbiology 9 (3) (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: small relatives of giant viruses. mBio (2024)
Roman Kogay, Yuri I Wolf, Eugene V Koonin
Defence systems and horizontal gene transfer in bacteria. Environmental microbiology 26 (4) (2024)
Anastasiia Chaban, Leonid Minakhin, Ekaterina Goldobina, Brain Bae, Yue Hao, Sergei Borukhov, Leena Putzeys, Maarten Boon, Florian Kabinger, Rob Lavigne, Kira S Makarova, Eugene V Koonin, Satish K Nair, Shunsuke Tagami, Konstantin V Severinov, Maria L Sokolova
Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail. Nature communications 15 (1) (2024)
Zhongyi Lu, Runyue Xia, Siyu Zhang, Jie Pan, Yang Liu, Yuri I Wolf, Eugene V Koonin, Yuhan Huang
Evolution of optimal growth temperature in Asgard archaea inferred from the temperature dependence of GDP binding to EF-1A. Nature communications 15 (1) (2024)
Ryan T Bell, Harutyun Sahakyan, Kira S Makarova, Yuri I Wolf, Eugene V Koonin
CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA. eLife 13 (2024)
Kira S Makarova, Changyi Zhang, Yuri I Wolf, Svetlana Karamycheva, Rachel J Whitaker, Eugene V Koonin
Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea. mBio 15 (2) (2024)
Ryan T Bell, Harutyun Sahakyan, Kira S Makarova, Yuri I Wolf, Eugene V Koonin
CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA. eLife 13 (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: small relatives of giant viruses. mBio (2024)
Eugene V Koonin, Matthias G Fischer, J Thomas Beatty, Mart Krupovic
The polinton-like supergroup of viruses: evolution, molecular biology, and taxonomy. Microbiology and molecular biology reviews : MMBR (2024)
Roman Kogay, Yuri I Wolf, Eugene V Koonin
Defense systems and horizontal gene transfer in bacteria. bioRxiv : the preprint server for biology (2024)
Danyil Grybchuk, Arnau Galan, Donnamae Klocek, Diego H Macedo, Yuri I Wolf, Jan Votypka, Anzhelika Butenko, Julius Lukeš, Uri Neri, Kristína Záhonová, Alexei Yu Kostygov, Eugene V Koonin, Vyacheslav Yurchenko
Identification of diverse RNA viruses in Obscuromonas flagellates (Euglenozoa: Trypanosomatidae: Blastocrithidiinae). Virus evolution 10 (1) (2024)
Kira S Makarova, Changyi Zhang, Yuri I Wolf, Svetlana Karamycheva, Rachel J Whitaker, Eugene V Koonin
Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea. mBio (2024)
Igor Fesenko, Harutyun Sahakyan, Svetlana A Shabalina, Eugene V Koonin
The Cryptic Bacterial Microproteome. bioRxiv : the preprint server for biology (2024)
Eugene V Koonin
Circular RNAs from linear viral RNA genomes: A distinct dimension in the virus world. Proceedings of the National Academy of Sciences of the United States of America 121 (8) (2024)
Ryan T Bell, Harutyun Sahakyan, Kira S Makarova, Yuri I Wolf, Eugene V Koonin
CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA. eLife 13 (2024)
Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V Koonin
Mriyaviruses: small relatives of giant viruses. mBio 15 (7) (2024)
Han Altae-Tran, Soumya Kannan, Anthony J Suberski, Kepler S Mears, F Esra Demircioglu, Lukas Möller, Selin Kocalar, Rachel Oshiro, Kira S Makarova, Rhiannon K Macrae, Eugene V Koonin, Feng Zhang
Uncovering the functional diversity of rare CRISPR-Cas systems with deep terascale clustering. Science (New York, N.Y.) 382 (6673) (2023)
Oliver W Bayfield, Andrey N Shkoporov, Natalya Yutin, Ekaterina V Khokhlova, Jake L R Smith, Dorothy E D P Hawkins, Eugene V Koonin, Colin Hill, Alfred A Antson
Structural atlas of a human gut crassvirus. Nature 617 (7960) (2023)
Sergey A Shmakov, Zachary K Barth, Kira S Makarova, Yuri I Wolf, Vyacheslav Brover, Joseph E Peters, Eugene V Koonin
Widespread CRISPR-derived RNA regulatory elements in CRISPR-Cas systems. Nucleic acids research (2023)

Eugene V Koonin.css-eqlu8i{font-size:small;padding-left:4px;} (E Koonin, Eugene Koonin)

Publication Activity (10 Years)

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Eugene V Koonin (E Koonin, Eugene Koonin)