Mobile DNA

Keyphrases

Publications

volume 15, number 1, 2024

Michel Choudalakis, Pavel Bashtrykov, Albert Jeltsch
RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats. Mobile DNA 15 (1) (2024)
Ursula Oggenfuss, Thomas Badet, Daniel Croll
A systematic screen for co-option of transposable elements across the fungal kingdom. Mobile DNA 15 (1) (2024)
Michel Choudalakis, Pavel Bashtrykov, Albert Jeltsch
RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats. Mobile DNA 15 (1) (2024)
Nozhat T Hassan, James D Galbraith, David L Adelson
Multiple horizontal transfer events of a DNA transposon into turtles, fishes, and a frog. Mobile DNA 15 (1) (2024)
Ivar Westerberg, S Lorena Ament-Velásquez, Aaron A Vogan, Hanna Johannesson
Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations. Mobile DNA 15 (1) (2024)
Matthias Heuberger, Dal-Hoe Koo, Hanin Ibrahim Ahmed, Vijay K Tiwari, Michael Abrouk, Jesse A Poland, Simon G Krattinger, Thomas Wicker
Evolution of Einkorn wheat centromeres is driven by the mutualistic interplay of two LTR retrotransposons. Mobile DNA 15 (1) (2024)
Igor Bren, Ayellet Tal, Carmit Strauss, Sharon Schlesinger
The role of Smarcad1 in retroviral repression in mouse embryonic stem cells. Mobile DNA 15 (1) (2024)
Anthony B Garza, Emmanuelle Lerat, Hani Z Girgis
Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats. Mobile DNA 15 (1) (2024)
Ivar Westerberg, S Lorena Ament-Velásquez, Aaron A Vogan, Hanna Johannesson
Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations. Mobile DNA 15 (1) (2024)
Beverly Ann G Boyboy, Kenji Ichiyanagi
Insertion of short L1 sequences generates inter-strain histone acetylation differences in the mouse. Mobile DNA 15 (1) (2024)
Nozhat T Hassan, James D Galbraith, David L Adelson
Multiple horizontal transfer events of a DNA transposon into turtles, fishes, and a frog. Mobile DNA 15 (1) (2024)
Elena Fernández-Suárez, María González-Del Pozo, Cristina Méndez-Vidal, Marta Martín-Sánchez, Marcela Mena, Belén de la Morena-Barrio, Javier Corral, Salud Borrego, Guillermo Antiñolo
Long-read sequencing improves the genetic diagnosis of retinitis pigmentosa by identifying an Alu retrotransposon insertion in the EYS gene. Mobile DNA 15 (1) (2024)
Chris J Frangieh, Max E Wilkinson, Daniel Strebinger, Jonathan Strecker, Michelle L Walsh, Guilhem Faure, Irina A Yushenova, Rhiannon K Macrae, Irina R Arkhipova, Feng Zhang
Internal initiation of reverse transcription in a Penelope-like retrotransposon. Mobile DNA 15 (1) (2024)
Matthias Heuberger, Dal-Hoe Koo, Hanin Ibrahim Ahmed, Vijay K Tiwari, Michael Abrouk, Jesse A Poland, Simon G Krattinger, Thomas Wicker
Evolution of Einkorn wheat centromeres is driven by the mutualistic interplay of two LTR retrotransposons. Mobile DNA 15 (1) (2024)
Chris J Frangieh, Max E Wilkinson, Daniel Strebinger, Jonathan Strecker, Michelle L Walsh, Guilhem Faure, Irina A Yushenova, Rhiannon K Macrae, Irina R Arkhipova, Feng Zhang
Internal initiation of reverse transcription in a Penelope-like retrotransposon. Mobile DNA 15 (1) (2024)
Xuanzeng Liu, Lina Zhao, Muhammad Majid, Yuan Huang
Orthoptera-TElib: a library of Orthoptera transposable elements for TE annotation. Mobile DNA 15 (1) (2024)
Fatemeh Moadab, Sepideh Sohrabi, Xiaoxing Wang, Rayan Najjar, Justina C Wolters, Hua Jiang, Wenyan Miao, Donna Romero, Dennis M Zaller, Megan Tran, Alison Bays, Martin S Taylor, Rosana Kapeller, John LaCava, Tomas Mustelin
Subcellular location of L1 retrotransposon-encoded ORF1p, reverse transcription products, and DNA sensors in lupus granulocytes. Mobile DNA 15 (1) (2024)
Yixin Guo, Ziwei Xue, Meiting Gong, Siqian Jin, Xindi Wu, Wanlu Liu
CRISPR-TE: a web-based tool to generate single guide RNAs targeting transposable elements. Mobile DNA 15 (1) (2024)
Weronika Mikina, Paweł Hałakuc, Rafał Milanowski
Transposon-derived introns as an element shaping the structure of eukaryotic genomes. Mobile DNA 15 (1) (2024)
Chris J Frangieh, Max E Wilkinson, Daniel Strebinger, Jonathan Strecker, Michelle L Walsh, Guilhem Faure, Irina A Yushenova, Rhiannon K Macrae, Irina R Arkhipova, Feng Zhang
Internal initiation of reverse transcription in a Penelope-like retrotransposon. Mobile DNA 15 (1) (2024)
Pío Sierra, Richard Durbin
Identification of transposable element families from pangenome polymorphisms. Mobile DNA 15 (1) (2024)
Beverly Ann G Boyboy, Kenji Ichiyanagi
Insertion of short L1 sequences generates inter-strain histone acetylation differences in the mouse. Mobile DNA 15 (1) (2024)
Pío Sierra, Richard Durbin
Identification of transposable element families from pangenome polymorphisms. Mobile DNA 15 (1) (2024)
Elena Fernández-Suárez, María González-Del Pozo, Cristina Méndez-Vidal, Marta Martín-Sánchez, Marcela Mena, Belén de la Morena-Barrio, Javier Corral, Salud Borrego, Guillermo Antiñolo
Long-read sequencing improves the genetic diagnosis of retinitis pigmentosa by identifying an Alu retrotransposon insertion in the EYS gene. Mobile DNA 15 (1) (2024)
Valentina Peona, Jacopo Martelossi, Dareen Almojil, Julia Bocharkina, Ioana Brännström, Max Brown, Alice Cang, Tomàs Carrasco-Valenzuela, Jon DeVries, Meredith Doellman, Daniel Elsner, Pamela Espíndola-Hernández, Guillermo Friis Montoya, Bence Gaspar, Danijela Zagorski, Paweł Hałakuc, Beti Ivanovska, Christopher Laumer, Robert Lehmann, Ljudevit Luka Boštjančić, Rahia Mashoodh, Sofia Mazzoleni, Alice Mouton, Maria Anna Nilsson, Yifan Pei, Giacomo Potente, Panagiotis Provataris, José Ramón Pardos-Blas, Ravindra Raut, Tomasa Sbaffi, Florian Schwarz, Jessica Stapley, Lewis Stevens, Nusrat Sultana, Radka Symonova, Mohadeseh S Tahami, Alice Urzì, Heidi Yang, Abdullah Yusuf, Carlo Pecoraro, Alexander Suh
Teaching transposon classification as a means to crowd source the curation of repeat annotation - a tardigrade perspective. Mobile DNA 15 (1) (2024)
Weronika Mikina, Paweł Hałakuc, Rafał Milanowski
Transposon-derived introns as an element shaping the structure of eukaryotic genomes. Mobile DNA 15 (1) (2024)
Nozhat T Hassan, James D Galbraith, David L Adelson
Multiple horizontal transfer events of a DNA transposon into turtles, fishes, and a frog. Mobile DNA 15 (1) (2024)
Igor Bren, Ayellet Tal, Carmit Strauss, Sharon Schlesinger
The role of Smarcad1 in retroviral repression in mouse embryonic stem cells. Mobile DNA 15 (1) (2024)
Anthony B Garza, Emmanuelle Lerat, Hani Z Girgis
Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats. Mobile DNA 15 (1) (2024)
Igor Bren, Ayellet Tal, Carmit Strauss, Sharon Schlesinger
The role of Smarcad1 in retroviral repression in mouse embryonic stem cells. Mobile DNA 15 (1) (2024)
Matthias Heuberger, Dal-Hoe Koo, Hanin Ibrahim Ahmed, Vijay K Tiwari, Michael Abrouk, Jesse A Poland, Simon G Krattinger, Thomas Wicker
Evolution of Einkorn wheat centromeres is driven by the mutualistic interplay of two LTR retrotransposons. Mobile DNA 15 (1) (2024)
Ezequiel G Mogro, Walter O Draghi, Antonio Lagares, Mauricio Javier Lozano
Identification and functional analysis of recent IS transposition events in rhizobia. Mobile DNA 15 (1) (2024)
Ursula Oggenfuss, Thomas Badet, Daniel Croll
A systematic screen for co-option of transposable elements across the fungal kingdom. Mobile DNA 15 (1) (2024)
Yixin Guo, Ziwei Xue, Meiting Gong, Siqian Jin, Xindi Wu, Wanlu Liu
CRISPR-TE: a web-based tool to generate single guide RNAs targeting transposable elements. Mobile DNA 15 (1) (2024)
Xuanzeng Liu, Lina Zhao, Muhammad Majid, Yuan Huang
Orthoptera-TElib: a library of Orthoptera transposable elements for TE annotation. Mobile DNA 15 (1) (2024)
Fatemeh Moadab, Sepideh Sohrabi, Xiaoxing Wang, Rayan Najjar, Justina C Wolters, Hua Jiang, Wenyan Miao, Donna Romero, Dennis M Zaller, Megan Tran, Alison Bays, Martin S Taylor, Rosana Kapeller, John LaCava, Tomas Mustelin
Subcellular location of L1 retrotransposon-encoded ORF1p, reverse transcription products, and DNA sensors in lupus granulocytes. Mobile DNA 15 (1) (2024)
Xuanzeng Liu, Lina Zhao, Muhammad Majid, Yuan Huang
Orthoptera-TElib: a library of Orthoptera transposable elements for TE annotation. Mobile DNA 15 (1) (2024)
Fatemeh Moadab, Sepideh Sohrabi, Xiaoxing Wang, Rayan Najjar, Justina C Wolters, Hua Jiang, Wenyan Miao, Donna Romero, Dennis M Zaller, Megan Tran, Alison Bays, Martin S Taylor, Rosana Kapeller, John LaCava, Tomas Mustelin
Subcellular location of L1 retrotransposon-encoded ORF1p, reverse transcription products, and DNA sensors in lupus granulocytes. Mobile DNA 15 (1) (2024)
Valentina Peona, Jacopo Martelossi, Dareen Almojil, Julia Bocharkina, Ioana Brännström, Max Brown, Alice Cang, Tomàs Carrasco-Valenzuela, Jon DeVries, Meredith Doellman, Daniel Elsner, Pamela Espíndola-Hernández, Guillermo Friis Montoya, Bence Gaspar, Danijela Zagorski, Paweł Hałakuc, Beti Ivanovska, Christopher Laumer, Robert Lehmann, Ljudevit Luka Boštjančić, Rahia Mashoodh, Sofia Mazzoleni, Alice Mouton, Maria Anna Nilsson, Yifan Pei, Giacomo Potente, Panagiotis Provataris, José Ramón Pardos-Blas, Ravindra Raut, Tomasa Sbaffi, Florian Schwarz, Jessica Stapley, Lewis Stevens, Nusrat Sultana, Radka Symonova, Mohadeseh S Tahami, Alice Urzì, Heidi Yang, Abdullah Yusuf, Carlo Pecoraro, Alexander Suh
Teaching transposon classification as a means to crowd source the curation of repeat annotation - a tardigrade perspective. Mobile DNA 15 (1) (2024)
Anthony B Garza, Emmanuelle Lerat, Hani Z Girgis
Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats. Mobile DNA 15 (1) (2024)
Ursula Oggenfuss, Thomas Badet, Daniel Croll
A systematic screen for co-option of transposable elements across the fungal kingdom. Mobile DNA 15 (1) (2024)

volume 14, number 1, 2023

Kennedy C Ukadike, Rayan Najjar, Kathryn Ni, Amanda Laine, Xiaoxing Wang, Alison Bays, Martin S Taylor, John LaCava, Tomas Mustelin
Expression of L1 retrotransposons in granulocytes from patients with active systemic lupus erythematosus. Mobile DNA 14 (1) (2023)
Kennedy C Ukadike, Rayan Najjar, Kathryn Ni, Amanda Laine, Xiaoxing Wang, Alison Bays, Martin S Taylor, John LaCava, Tomas Mustelin
Expression of L1 retrotransposons in granulocytes from patients with active systemic lupus erythematosus. Mobile DNA 14 (1) (2023)
Zheng Zuo
THE1B may have no role in human pregnancy due to ZNF430-mediated silencing. Mobile DNA 14 (1) (2023)
Thanh Quang Tran, Minyoung Park, Jong Eun Lee, Soo Hyun Kim, Jae-Ho Jeong, Hyon E Choy
Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea. Mobile DNA 14 (1) (2023)
Thanh Quang Tran, Minyoung Park, Jong Eun Lee, Soo Hyun Kim, Jae-Ho Jeong, Hyon E Choy
Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea. Mobile DNA 14 (1) (2023)
Thanh Quang Tran, Minyoung Park, Jong Eun Lee, Soo Hyun Kim, Jae-Ho Jeong, Hyon E Choy
Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea. Mobile DNA 14 (1) (2023)
Pavel Jedlička, Viktor Tokan, Iva Kejnovská, Roman Hobza, Eduard Kejnovský
Telomeric retrotransposons show propensity to form G-quadruplexes in various eukaryotic species. Mobile DNA 14 (1) (2023)
Thanh Quang Tran, Minyoung Park, Jong Eun Lee, Soo Hyun Kim, Jae-Ho Jeong, Hyon E Choy
Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea. Mobile DNA 14 (1) (2023)
Desmila Idola, Hiroshi Mori, Yuji Nagata, Lisa Nonaka, Hirokazu Yano
Host range of strand-biased circularizing integrative elements: a new class of mobile DNA elements nesting in Gammaproteobacteria. Mobile DNA 14 (1) (2023)