Ahmed Babiker

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 45

Top Topics

Klebsiella Pneumoniae

Multidrug Resistant

Electronic Health Record

Respiratory Syndrome Coronavirus

Top Venues

Journal of clinical microbiology

JAC-antimicrobial resistance

Open forum infectious diseases

Annals of internal medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Jeffrey R Strich, Ahmed Mishuk, Guoqing Diao, Alexander Lawandi, Willy Li, Cumhur Y Demirkale, Ahmed Babiker, Alex Mancera, Bruce J Swihart, Morgan Walker, Christina Yek, Maniraj Neupane, Nathaniel De Jonge, Sarah Warner, Sameer S Kadri, null null
Assessing Clinician Utilization of Next-Generation Antibiotics Against Resistant Gram-Negative Infections in U.S. Hospitals : A Retrospective Cohort Study. Annals of internal medicine (2024)
Ahmed Babiker, Sarah Lohsen, Julia Van Riel, Karin Hjort, David S Weiss, Dan I Andersson, Sarah W Satola
Heteroresistance to piperacillin/tazobactam in Klebsiella pneumoniae is mediated by increased copy number of multiple β-lactamase genes. JAC-antimicrobial resistance 6 (2) (2024)
Ahmed Babiker, Sarah Lohsen, Julia Van Riel, Karin Hjort, David S Weiss, Dan I Andersson, Sarah W Satola
Heteroresistance to piperacillin/tazobactam in Klebsiella pneumoniae is mediated by increased copy number of multiple β-lactamase genes. JAC-antimicrobial resistance 6 (2) (2024)
Ahmed Babiker, Geeta M Karadkhele, Andrei Bombin, Rockford Watkins, Chad Robichaux, Gillian Smith, Vivek Bhika Beechar, Danielle B Steed, Jesse T Jacobs, Timothy D Read, Sarah W Satola, Christian P Larsen, Colleen S Kraft, Stephanie Marie Pouch, Michael H Woodworth
The Burden and Impact of Early Post-transplant Multidrug-Resistant Organism Detection Among Renal Transplant Recipients, 2005-2021. Open forum infectious diseases 11 (3) (2024)
Ahmed Babiker, Geeta M Karadkhele, Andrei Bombin, Rockford Watkins, Chad Robichaux, Gillian Smith, Vivek Bhika Beechar, Danielle B Steed, Jesse T Jacobs, Timothy D Read, Sarah W Satola, Christian P Larsen, Colleen S Kraft, Stephanie Marie Pouch, Michael H Woodworth
The Burden and Impact of Early Post-transplant Multidrug-Resistant Organism Detection Among Renal Transplant Recipients, 2005-2021. Open forum infectious diseases 11 (3) (2024)
Christina K Lin, Alex Page, Sarah Lohsen, Ali A Haider, Jesse Waggoner, Gillian Smith, Ahmed Babiker, Lindsey B Gottlieb, Jessica R Howard-Anderson, Sarah W Satola
Rates of resistance and heteroresistance to newer β-lactam/β-lactamase inhibitors for carbapenem-resistant Enterobacterales. JAC-antimicrobial resistance 6 (2) (2024)
Jeffrey R Strich, Ahmed Mishuk, Guoqing Diao, Alexander Lawandi, Willy Li, Cumhur Y Demirkale, Ahmed Babiker, Alex Mancera, Bruce J Swihart, Morgan Walker, Christina Yek, Maniraj Neupane, Nathaniel De Jonge, Sarah Warner, Sameer S Kadri, null null
Assessing Clinician Utilization of Next-Generation Antibiotics Against Resistant Gram-Negative Infections in U.S. Hospitals : A Retrospective Cohort Study. Annals of internal medicine 177 (5) (2024)
Christina K Lin, Alex Page, Sarah Lohsen, Ali A Haider, Jesse Waggoner, Gillian Smith, Ahmed Babiker, Lindsey B Gottlieb, Jessica R Howard-Anderson, Sarah W Satola
Rates of resistance and heteroresistance to newer β-lactam/β-lactamase inhibitors for carbapenem-resistant Enterobacterales. JAC-antimicrobial resistance 6 (2) (2024)
Ahmed Babiker, Sarah Lohsen, Julia Van Riel, Karin Hjort, David S Weiss, Dan I Andersson, Sarah W Satola
Heteroresistance to piperacillin/tazobactam in Klebsiella pneumoniae is mediated by increased copy number of multiple β-lactamase genes. JAC-antimicrobial resistance 6 (2) (2024)
Christina K Lin, Alex Page, Sarah Lohsen, Ali A Haider, Jesse Waggoner, Gillian Smith, Ahmed Babiker, Lindsey B Gottlieb, Jessica R Howard-Anderson, Sarah W Satola
Rates of resistance and heteroresistance to newer β-lactam/β-lactamase inhibitors for carbapenem-resistant Enterobacterales. JAC-antimicrobial resistance 6 (2) (2024)
Ludy R Carmola, Allison Dorothy Roebling, Dara Khosravi, Rose M Langsjoen, Andrei Bombin, Bri Bixler, Alex Reid, Cara Chen, Ethan Wang, Yang Lu, Ziduo Zheng, Rebecca Zhang, Phuong-Vi Nguyen, Robert A Arthur, Eric Fitts, Dalia Arafat Gulick, Dustin Higginbotham, Azmain Taz, Alaa Ahmed, John Hunter Crumpler, Colleen Kraft, Wilbur A Lam, Ahmed Babiker, Jesse J Waggoner, Kyle P Openo, Laura M Johnson, Adrianna Westbrook, Anne Piantadosi
Viral and host factors associated with SARS-CoV-2 disease severity in Georgia, USA. medRxiv : the preprint server for health sciences (2023)
Hamza A Babiker, Amina Al-Jardani, Saleh Al-Azri, Robert A Petit, Eltaib Saad, Sarah Al-Mahrouqi, Reham A H Mohamed, Salama Al-Hamidhi, Abdullah A Balkhair, Najma Al Kharusi, Laila Al Balushi, Samiya Al Zadjali, Lucía Pérez-Pardal, Albano Beja-Pereira, Ahmed Babiker
Mycobacterium tuberculosis epidemiology in Oman: whole-genome sequencing uncovers transmission pathways. Microbiology spectrum (2023)
Gregory L Damhorst, Nils Schoof, Phuong-Vi Nguyen, Hans Verkerke, Eli Wilber, Kaleb McLendon, William O'Sick, Tyler Baugh, Suneethamma Cheedarla, Narayanaiah Cheedarla, Victoria Stittleburg, Eric C Fitts, Margaret A Neja, Ahmed Babiker, Pardis Sabeti, John D Roback, Jesse J Waggoner, Maud Mavigner, Wilbur A Lam
Investigation of Blood Plasma Viral Nucleocapsid Antigen as a Marker of Active Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant Infection. Open forum infectious diseases 10 (5) (2023)
Sadia H Sarzynski, Alexander Lawandi, Sarah Warner, Cumhur Y Demirkale, Jeffrey R Strich, John P Dekker, Ahmed Babiker, Willy Li, Sameer S Kadri
Association between minimum inhibitory concentration values and mortality risk in patients with Stenotrophomonas maltophilia infections: a retrospective cohort study of electronic health records from 148 US hospitals. JAC-antimicrobial resistance 5 (2) (2023)
Eli P Wilber, Ahmed Babiker, Jessica R Howard-Anderson, Jill E Holdsworth, Eileen M Burd, M Jeremy Eldridge, Lindsey B Gottlieb
Effect of an initial specimen diversion device on blood-culture contamination rates and vancomycin usage: A quasi-experimental study. Infection control and hospital epidemiology (2023)
Jeffrey R Strich, Alexander Lawandi, Sarah Warner, Cumhur Y Demirkale, Sadia Sarzynski, Ahmed Babiker, John P Dekker, Sameer S Kadri
Association between piperacillin/tazobactam MIC and survival among hospitalized patients with Enterobacterales infections: retrospective cohort analysis of electronic health records from 161 US hospitals. JAC-antimicrobial resistance 5 (2) (2023)
Sadia H Sarzynski, Alexander Lawandi, Sarah Warner, Cumhur Y Demirkale, Jeffrey R Strich, John P Dekker, Ahmed Babiker, Willy Li, Sameer S Kadri
Association between minimum inhibitory concentration values and mortality risk in patients with Stenotrophomonas maltophilia infections: a retrospective cohort study of electronic health records from 148 US hospitals. JAC-antimicrobial resistance 5 (2) (2023)
Gregory L Damhorst, Nils Schoof, Phuong-Vi Nguyen, Hans Verkerke, Eli Wilber, Kaleb McLendon, William O'Sick, Tyler Baugh, Suneethamma Cheedarla, Narayanaiah Cheedarla, Victoria Stittleburg, Eric C Fitts, Margaret A Neja, Ahmed Babiker, Pardis Sabeti, John D Roback, Jesse J Waggoner, Maud Mavigner, Wilbur A Lam
Investigation of Blood Plasma Viral Nucleocapsid Antigen as a Marker of Active Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant Infection. Open forum infectious diseases 10 (5) (2023)
Michael H Woodworth, Roth E Conrad, Marina Haldopoulos, Stephanie Marie Pouch, Ahmed Babiker, Aneesh K Mehta, Kaitlin L Sitchenko, Charlotte H Wang, Amanda Strudwick, Jessica M Ingersoll, Cécile Philippe, Sarah Lohsen, Kumru Kocaman, Blake G Lindner, Janet K Hatt, Rheinallt M Jones, Candace Miller, Andrew S Neish, Rachel Friedman-Moraco, Geeta M Karadkhele, Ken H Liu, Dean P Jones, Cyra Christina Mehta, Thomas R Ziegler, David S Weiss, Christian P Larsen, Konstantinos T Konstantinidis, Colleen S Kraft
Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement. Science translational medicine 15 (720) (2023)
Ahmed Babiker, Michael A Martin, Charles Marvil, Stephanie Bellman, Robert A Petit Iii, Heath L Bradley, Victoria D Stittleburg, Jessica Ingersoll, Colleen S Kraft, Yan Li, Jing Zhang, Clinton R Paden, Timothy D Read, Jesse J Waggoner, Katia Koelle, Pardis Sabeti
Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic. Virus evolution 8 (1) (2022)
Eli Wilber, Pardis Sabeti, Ahmed Babiker, Kaleb McLendon, William O'Sick, Eric Fitts, Andrew S Webster, Hans Verkerke, James S Kim, Varun K Phadke, Nadine G Rouphael, Boghuma K Titanji, William T Blake, Jessica Howard-Anderson, John D Roback, Wilbur A Lam, Gregory L Damhorst
Nucleocapsid Antigenemia in Patients Receiving Anti-CD20 Therapy With Protracted COVID-19. Open forum infectious diseases 9 (8) (2022)
Ahmed Babiker, Lloyd G Clarke, Melissa Saul, Julie A Gealey, Cornelius J Clancy, M Hong Nguyen, Ryan K Shields
Changing Epidemiology and Decreased Mortality Associated With Carbapenem-resistant Gram-negative Bacteria, 2000-2017. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 73 (11) (2022)
Jacob C Hodges, Andrew L Bilderback, Christine M Bridge, Suzanne Wagester, Bonnie V Colaianne, Ahmed Babiker, Tami Minnier, Rachel L Zapf, Paula L Kip, Graham M Snyder
Assessment of the effectiveness of ultraviolet-C disinfection on transmission of hospital-acquired pathogens from prior room occupants. Antimicrobial stewardship & healthcare epidemiology : ASHE 2 (1) (2022)
Ahmed Babiker, Chris Bower, Joseph D Lutgring, Robert A Petit, Jessica Howard-Anderson, Uzma Ansari, Gillian McAllister, Michelle Adamczyk, Erin Breaker, Sarah W Satola, Lindsey B Gottlieb, Michael H Woodworth
Clinical and Genomic Epidemiology of mcr-9 -Carrying Carbapenem-Resistant Enterobacterales Isolates in Metropolitan Atlanta, 2012 to 2017. Microbiology spectrum 10 (4) (2022)
Sadia H Sarzynski, Sarah Warner, Junfeng Sun, Roland Matsouaka, John P Dekker, Ahmed Babiker, Willy Li, Yi Ling Lai, Robert L Danner, Vance G Fowler, Sameer S Kadri
Trimethoprim-Sulfamethoxazole Versus Levofloxacin for Stenotrophomonas maltophilia Infections: A Retrospective Comparative Effectiveness Study of Electronic Health Records from 154 US Hospitals. Open forum infectious diseases 9 (2) (2022)
Gregory L Damhorst, Kari J Broder, Elizabeth C Overton, Ronelio Rara, Lindsay M Busch, Eileen M Burd, Andrew S Webster, Colleen S Kraft, Ahmed Babiker
Clinical Utilization of DiaSorin Molecular Polymerase Chain Reaction in Pneumocystis Pneumonia. Open forum infectious diseases 9 (1) (2022)
Ahmed Babiker
mSphere of Influence: Whole-Genome Sequencing, a Vital Tool for the Interruption of Nosocomial Transmission. mSphere 6 (2) (2021)
Sameer S Kadri, Junfeng Sun, Alexander Lawandi, Jeffrey R Strich, Lindsay M Busch, Michael Keller, Ahmed Babiker, Christina Yek, Seidu Malik, Janell Krack, John P Dekker, Alicen B Spaulding, Emily E Ricotta, John H Powers, Chanu Rhee, Michael Klompas, Janhavi Athale, Tegan K Boehmer, Adi V Gundlapalli, William Bentley, S Deblina Datta, Robert L Danner, Cumhur Y Demirkale, Sarah Warner
Association Between Caseload Surge and COVID-19 Survival in 558 U.S. Hospitals, March to August 2020. Annals of internal medicine 174 (9) (2021)
Chelsea E Modlin, Jessica Howard-Anderson, Ashley M Greer, Christine E Marchioli, Edmund K Waller, Aneesh K Mehta, Eileen M Burd, Colleen S Kraft, Ahmed Babiker
Photo Quiz: Strength in Numbers-a Disseminated Infection Causing Shortness of Breath. Journal of clinical microbiology 59 (5) (2021)
Ahmed Babiker, Jessica M Ingersoll, Max W Adelman, Andrew S Webster, Kari J Broder, Victoria Stittleburg, Jesse J Waggoner, Colleen S Kraft, Michael H Woodworth
Validation of High-Sensitivity Severe Acute Respiratory Syndrome Coronavirus 2 Testing for Stool-Toward the New Normal for Fecal Microbiota Transplantation. Clinical and translational gastroenterology 12 (6) (2021)
Venkata-Viswanadh Edara, Katharine Floyd, Lilin Lai, Meredith E Davis-Gardner, William Hudson, Pardis Sabeti, Jesse J Waggoner, Ahmed Babiker, Rajesh M Valanparambil, Xuping Xie, Kumari Lokugamage, Vineet D Menachery, Pei-Yong Shi, Mehul S Suthar
Infection and mRNA-1273 vaccine antibodies neutralize SARS-CoV-2 UK variant. medRxiv : the preprint server for health sciences (2021)
Charles E Marvil, Ahmed Babiker, Aaron Preston, Andrew Webster, Jeannette Guarner, Kari Love, Elham Ghonim, Paulina A Rebolledo, Yun F Wang, Robert A Arthur, H Richard Johnston, Jesse J Waggoner, Anne Piantadosi, Jesse T Jacob
Outbreak of SARS-CoV-2 in hospitalized hemodialysis patients: an epidemiologic and genomic investigation. Infection control and hospital epidemiology (2021)
Ahmed Babiker, Katherine Immergluck, Samuel D Stampfer, Anuradha Rao, Leda Bassit, Max Su, Vi Nguyen, Victoria Stittleburg, Jessica M Ingersoll, Heath L Bradley, Maud Mavigner, Nils Schoof, Colleen S Kraft, Ann Chahroudi, Raymond F Schinazi, Greg S Martin, Pardis Sabeti, Wilbur A Lam, Jesse J Waggoner
Single-Amplicon Multiplex Real-Time Reverse Transcription-PCR with Tiled Probes To Detect SARS-CoV-2 spike Mutations Associated with Variants of Concern. Journal of clinical microbiology 59 (12) (2021)
Ahmed Babiker, Charles E Marvil, Jesse J Waggoner, Matthew H Collins, Pardis Sabeti
The Importance and Challenges of Identifying SARS-CoV-2 Reinfections. Journal of clinical microbiology 59 (4) (2021)
Chelsea E Modlin, Jessica Howard-Anderson, Ashley M Greer, Christine E Marchioli, Edmund K Waller, Aneesh K Mehta, Eileen M Burd, Colleen S Kraft, Ahmed Babiker
Answer to May 2021 Photo Quiz. Journal of clinical microbiology 59 (5) (2021)
Venkata-Viswanadh Edara, Carson Norwood, Katharine Floyd, Lilin Lai, Meredith E Davis-Gardner, William H Hudson, Grace Mantus, Lindsay E Nyhoff, Max W Adelman, Rebecca Fineman, Shivan Patel, Rebecca Byram, Dumingu Nipuni Gomes, Garett Michael, Hayatu Abdullahi, Nour Beydoun, Bernadine Panganiban, Nina McNair, Kieffer Hellmeister, Jamila Pitts, Joy Winters, Jennifer Kleinhenz, Jacob Usher, James B O'Keefe, Pardis Sabeti, Jesse J Waggoner, Ahmed Babiker, David S Stephens, Evan J Anderson, Srilatha Edupuganti, Nadine Rouphael, Rajesh M Valanparambil, Jens Wrammert, Mehul S Suthar
Reduced binding and neutralization of infection- and vaccine-induced antibodies to the B.1.351 (South African) SARS-CoV-2 variant. bioRxiv : the preprint server for biology (2021)
Ahmed Babiker, Daniel R Evans, Marissa P Griffith, Christi L McElheny, Mohamed Hassan, Lloyd G Clarke, Roberta T Mettus, Lee H Harrison, Yohei Doi, Ryan K Shields, Daria Van Tyne
Clinical and Genomic Epidemiology of Carbapenem-Nonsusceptible Citrobacter spp. at a Tertiary Health Care Center over 2 Decades. Journal of clinical microbiology 58 (9) (2020)
Abdulaziz M Almulhim, Cristina Marie Vellozzi-Averhoff, Jessica Howard-Anderson, Ahmed Babiker, Colleen S Kraft
Answer to November 2020 Photo Quiz. Journal of clinical microbiology 58 (11) (2020)
Ahmed Babiker, Heath L Bradley, Victoria D Stittleburg, Jessica M Ingersoll, Autum Key, Colleen S Kraft, Jesse J Waggoner, Pardis Sabeti
Metagenomic Sequencing To Detect Respiratory Viruses in Persons under Investigation for COVID-19. Journal of clinical microbiology 59 (1) (2020)
Ahmed Babiker, Heath Bradley, Victoria Stittleburg, Autum Key, Colleen Suzanne Kraft, Jesse Waggoner, Anne Piantadosi
Metagenomic sequencing to detect respiratory viruses in persons under investigation for COVID-19. medRxiv : the preprint server for health sciences (2020)
Eileen M Burd, Ahmed Babiker, Jessica K Fairley, Divya Bhamidipati, Laila E Woc-Colburn, Blaine A Mathison
Closing the Brief Case: Loa loa in a Patient from Nigeria. Journal of clinical microbiology 59 (1) (2020)
Abdulaziz M Almulhim, Cristina Marie Vellozzi-Averhoff, Jessica Howard-Anderson, Ahmed Babiker, Colleen S Kraft
Photo Quiz: Bilateral Necrotizing Pneumonia in a 30-Year-Old Woman, a Hairy Situation. Journal of clinical microbiology 58 (11) (2020)
Eileen M Burd, Ahmed Babiker, Jessica K Fairley, Divya Bhamidipati, Laila E Woc-Colburn, Blaine A Mathison
The Brief Case: Loa loa in a Patient from Nigeria. Journal of clinical microbiology 59 (1) (2020)
Danielle Barrios Steed, Tiffany Wang, Divyanshu Raheja, Alex D Waldman, Ahmed Babiker, Tanvi Dhere, Colleen S Kraft, Michael H Woodworth
Gram-Negative Taxa and Antimicrobial Susceptibility after Fecal Microbiota Transplantation for Recurrent Clostridioides difficile Infection. mSphere 5 (5) (2020)
Jane W Marsh, Mustapha M Mustapha, Marissa P Griffith, Daniel R Evans, Chinelo Ezeonwuka, A William Pasculle, Kathleen A Shutt, Alexander Sundermann, Ashley M Ayres, Ryan K Shields, Ahmed Babiker, Vaughn S Cooper, Daria Van Tyne, Lee H Harrison
Evolution of Outbreak-Causing Carbapenem-Resistant Klebsiella pneumoniae ST258 at a Tertiary Care Hospital over 8 Years. mBio 10 (5) (2019)