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Vaughn S Cooper (Vaughn Cooper)

Scopus Author ID Loop profile Pitt ID Ciência ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 53

Top Venues

mBio

eLife

Journal of bacteriology

mSystems

University of Pittsburgh

Michigan State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pittsburgh Jul 1o 2015

United States

Professor :: Microbiology and Molecular Genetics

Education History

Michigan State University Aug 1o 1995 - May 1o 2000

United States

PHD :: Ecology, Evolutionary Biology, and Behavior

Publications

Kelly E Hurley, Srijon K Banerjee, Amelia C Stephens, Michelle R Scribner, Vaughn S Cooper, Anthony R Richardson
The contribution of DNA repair pathways to Staphylococcus aureus fitness and fidelity during nitric oxide stress. mBio (2023)
Ghady Haidar, Benjamin K Chan, Shu-Ting Cho, Kailey Hughes Kramer, Hayley R Nordstrom, Nathan R Wallace, Madison E Stellfox, Mische Holland, Ellen G Kline, Jennifer M Kozar, Silpa D Kilaru, Joseph M Pilewski, John J LiPuma, Vaughn S Cooper, Ryan K Shields, Daria Van Tyne
Phage therapy in a lung transplant recipient with cystic fibrosis infected with multidrug-resistant Burkholderia multivorans. Transplant infectious disease : an official journal of the Transplantation Society (2023)
Marc J Muraski, Emil M Nilsson, Melissa J Fritz, Anthony R Richardson, Rebecca W Alexander, Vaughn S Cooper
Adaptation to Overflow Metabolism by Mutations That Impair tRNA Modification in Experimentally Evolved Bacteria. mBio (2023)
Lorrie Maccario, Ana F Silva, Joseph Nesme, Cristina I Amador, Søren Johannes Sørensen, Vaughn S Cooper, Henriette L Røder
Draft genomes of seven isolates from Danish wastewater facilities belonging to Pseudomonas , Bacillus , Pseudochrobactrum , Brevundimonas , and Pandoraea . Microbiology resource announcements (2023)
Michelle R Scribner, Amelia C Stephens, Justin L Huong, Anthony R Richardson, Vaughn S Cooper
The Nutritional Environment Is Sufficient To Select Coexisting Biofilm and Quorum Sensing Mutants of Pseudomonas aeruginosa. Journal of bacteriology 204 (3) (2022)
Anita Rana, David L Patton, Nathan T Turner, Marcus M Dillon, Vaughn S Cooper, Way Sung
Precise measurement of the fitness effects of spontaneous mutations by droplet digital PCR in Burkholderia cenocepacia. Genetics 219 (2) (2022)
Alina Iovleva, Mustapha M Mustapha, Marissa P Griffith, Lauren Komarow, Courtney Luterbach, Daniel R Evans, Eric Cober, Sandra S Richter, Kirsten Rydell, Cesar A Arias, Lindsey B Gottlieb, Robert A Salata, Michael J Satlin, Darren Wong, Robert A Bonomo, David Van Duin, Vaughn S Cooper, Daria Van Tyne, Yohei Doi
Carbapenem-Resistant Acinetobacter baumannii in U.S. Hospitals: Diversification of Circulating Lineages and Antimicrobial Resistance. mBio 13 (2) (2022)
Wenwen Huo, Lindsay M Busch, Juan Hernandez-Bird, Efrat Hamami, Christopher W Marshall, Edward Geisinger, Vaughn S Cooper, Tim van Opijnen, Jason W Rosch, Ralph R Isberg
Immunosuppression broadens evolutionary pathways to drug resistance and treatment failure during Acinetobacter baumannii pneumonia in mice. Nature microbiology 7 (6) (2022)
Jennifer A Grousd, Brooke P Dresden, Abigail M Riesmeyer, Vaughn S Cooper, Jennifer M Bomberger, Anthony R Richardson, John F Alcorn
Novel Requirement for Staphylococcal Cell Wall-Anchored Protein SasD in Pulmonary Infection. Microbiology spectrum 10 (5) (2022)
Katrina B Harris, Kenneth M Flynn, Vaughn S Cooper
Polygenic Adaptation and Clonal Interference Enable Sustained Diversity in Experimental Pseudomonas aeruginosa Populations. Molecular biology and evolution 38 (12) (2022)
Alfonso Santos-Lopez, Melissa J Fritz, Jeffrey B Lombardo, Ansen H P Burr, Victoria A Heinrich, Christopher W Marshall, Vaughn S Cooper
Evolved resistance to a novel cationic peptide antibiotic requires high mutation supply. Evolution, medicine, and public health 10 (1) (2022)
Kady D Waggle, Marissa P Griffith, Lei Zhu, Vaughn S Cooper, Daniel J Snyder, Vatsala Srinivasa, Tung Phan, Alan Wells, Graham M Snyder, Daria Van Tyne, Lee H Harrison, Jane W Marsh
Genomic characterization of SARS-CoV-2 from vaccine breakthrough cases in Allegheny County, Pennsylvania. PloS one 17 (8) (2022)
Mustapha M Mustapha, Vatsala R Srinivasa, Marissa P Griffith, Shu-Ting Cho, Daniel R Evans, Kady Waggle, Chinelo Ezeonwuka, Daniel J Snyder, Jane W Marsh, Lee H Harrison, Vaughn S Cooper, Daria Van Tyne
Genomic Diversity of Hospital-Acquired Infections Revealed through Prospective Whole-Genome Sequencing-Based Surveillance. mSystems 7 (3) (2022)
Salini Konikkat, Michelle R Scribner, Rory Eutsey, N Luisa Hiller, Vaughn S Cooper, Charles Joel McManus
Quantitative mapping of mRNA 3' ends in Pseudomonas aeruginosa reveals a pervasive role for premature 3' end formation in response to azithromycin. PLoS genetics 17 (7) (2021)
Heiko T Kiesewalter, Carlos N Lozano-Andrade, Mario Wibowo, Mikael L Strube, Gergely Maróti, Dan Snyder, Tue Sparholt Jørgensen, Thomas O Larsen, Vaughn S Cooper, Tilmann Weber, Ákos T Kovács
Genomic and Chemical Diversity of Bacillus subtilis Secondary Metabolites against Plant Pathogenic Fungi. mSystems 6 (1) (2021)
Christopher W Marshall, Erin S Gloag, Christina Lim, Daniel J Wozniak, Vaughn S Cooper
Rampant prophage movement among transient competitors drives rapid adaptation during infection. Science advances 7 (29) (2021)
Abigail M Rubio, Ellen G Kline, Chelsea E Jones, Liang Chen, Barry N Kreiswirth, M Hong Nguyen, Cornelius J Clancy, Vaughn S Cooper, Ghady Haidar, Daria Van Tyne, Ryan K Shields
In Vitro Susceptibility of Multidrug-Resistant Pseudomonas aeruginosa following Treatment-Emergent Resistance to Ceftolozane-Tazobactam. Antimicrobial agents and chemotherapy 65 (6) (2021)
Collin Kessler, Eisha Mhatre, Vaughn S Cooper, Wook Kim
Evolutionary Divergence of the Wsp Signal Transduction Systems in Beta- and Gammaproteobacteria. Applied and environmental microbiology 87 (22) (2021)
Alfonso Santos-Lopez, Christopher W Marshall, Allison L Haas, Caroline B Turner, Javier Rasero Daparte, Vaughn S Cooper
The roles of history, chance, and natural selection in the evolution of antibiotic resistance. eLife 10 (2021)
Vaughn S Cooper, Erin Honsa, Hannah Rowe, Christopher Deitrick, Amy R Iverson, Jonathan J Whittall, Stephanie L Neville, Christopher A McDevitt, Colin Kietzman, Jason W Rosch
Experimental Evolution In Vivo To Identify Selective Pressures during Pneumococcal Colonization. mSystems 5 (3) (2020)
Eric L Bruger, Daniel J Snyder, Vaughn S Cooper, Christopher M Waters
Quorum sensing provides a molecular mechanism for evolution to tune and maintain investment in cooperation. The ISME journal 15 (4) (2020)
Daniel R Evans, Marissa P Griffith, Alexander J Sundermann, Kathleen A Shutt, Melissa I Saul, Mustapha M Mustapha, Jane W Marsh, Vaughn S Cooper, Lee H Harrison, Daria Van Tyne
Systematic detection of horizontal gene transfer across genera among multidrug-resistant bacteria in a single hospital. eLife 9 (2020)
Heiko T Kiesewalter, Carlos N Lozano-Andrade, Gergely Maróti, Dan Snyder, Vaughn S Cooper, Tue Sparholt Jørgensen, Tilmann Weber, Ákos T Kovács
Complete Genome Sequences of 13 Bacillus subtilis Soil Isolates for Studying Secondary Metabolite Diversity. Microbiology resource announcements 9 (2) (2020)
Michelle R Scribner, Alfonso Santos-Lopez, Christopher W Marshall, Christopher Deitrick, Vaughn S Cooper
Parallel Evolution of Tobramycin Resistance across Species and Environments. mBio 11 (3) (2020)
Eisha Mhatre, Daniel J Snyder, Emily Sileo, Caroline B Turner, Sean W Buskirk, Nicolas L Fernandez, Matthew B Neiditch, Christopher M Waters, Vaughn S Cooper
One gene, multiple ecological strategies: A biofilm regulator is a capacitor for sustainable diversity. Proceedings of the National Academy of Sciences of the United States of America 117 (35) (2020)
Jane W Marsh, Mustapha M Mustapha, Marissa P Griffith, Daniel R Evans, Chinelo Ezeonwuka, A William Pasculle, Kathleen A Shutt, Alexander Sundermann, Ashley M Ayres, Ryan K Shields, Ahmed Babiker, Vaughn S Cooper, Daria Van Tyne, Lee H Harrison
Evolution of Outbreak-Causing Carbapenem-Resistant Klebsiella pneumoniae ST258 at a Tertiary Care Hospital over 8 Years. mBio 10 (5) (2019)
Alfonso Santos-Lopez, Christopher W Marshall, Michelle R Scribner, Daniel J Snyder, Vaughn S Cooper
Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle. eLife 8 (2019)
Alina Iovleva, Roberta T Mettus, Christi L McElheny, Marissa P Griffith, Mustapha M Mustapha, A William Pasculle, Ryan K Shields, Vaughn S Cooper, Yohei Doi
High-Level Carbapenem Resistance in OXA-232-Producing Raoultella ornithinolytica Triggered by Ertapenem Therapy. Antimicrobial agents and chemotherapy 64 (1) (2019)
Meghan A Hartwick, Erin A Urquhart, Cheryl A Whistler, Vaughn S Cooper, Elena N Naumova, Stephen H Jones
Forecasting Seasonal Vibrio parahaemolyticus Concentrations in New England Shellfish. International journal of environmental research and public health 16 (22) (2019)
Caroline B Turner, Sean W Buskirk, Katrina B Harris, Vaughn S Cooper
Negative frequency-dependent selection maintains coexisting genotypes during fluctuating selection. Molecular ecology 29 (1) (2019)
Vaughn S Cooper, Taylor M Warren, Abigail M Matela, Michael Handwork, Shani Scarponi
EvolvingSTEM: a microbial evolution-in-action curriculum that enhances learning of evolutionary biology and biotechnology. Evolution 12 (1) (2019)
Juhan Kim, Jake J Flood, Michael R Kristofich, Cyrus Gidfar, Andrew B Morgenthaler, Tobias Fuhrer, Uwe Sauer, Daniel Snyder, Vaughn S Cooper, Christopher C Ebmeier, William M Old, Shelley D Copley
Hidden resources in the Escherichia coli genome restore PLP synthesis and robust growth after deletion of the essential gene pdxB. Proceedings of the National Academy of Sciences of the United States of America 116 (48) (2019)
Ravi K Patel, Mark C Weir, Kexin Shen, Daniel Snyder, Vaughn S Cooper, Thomas E Smithgall
Expression of myeloid Src-family kinases is associated with poor prognosis in AML and influences Flt3-ITD kinase inhibitor acquired resistance. PloS one 14 (12) (2019)
Erin S Gloag, Christopher W Marshall, Daniel Snyder, Gina R Lewin, Jacob S Harris, Alfonso Santos-Lopez, Sarah B Chaney, Marvin Whiteley, Vaughn S Cooper, Daniel J Wozniak
Pseudomonas aeruginosa Interstrain Dynamics and Selection of Hyperbiofilm Mutants during a Chronic Infection. mBio 10 (4) (2019)
Andrew B Morgenthaler, Wallis R Kinney, Christopher C Ebmeier, Corinne M Walsh, Daniel J Snyder, Vaughn S Cooper, William M Old, Shelley D Copley
Mutations that improve efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome. eLife 8 (2019)
Evan J Waldron, Daniel Snyder, Nicolas L Fernandez, Emily Sileo, Daigo Inoyama, Joel S Freundlich, Christopher M Waters, Vaughn S Cooper, Matthew B Neiditch
Structural basis of DSF recognition by its receptor RpfR and its regulatory interaction with the DSF synthase RpfF. PLoS biology 17 (2) (2019)
Caroline B Turner, Christopher W Marshall, Vaughn S Cooper
Parallel genetic adaptation across environments differing in mode of growth or resource availability. Evolution letters 2 (4) (2018)
Vaughn S Cooper
Experimental Evolution as a High-Throughput Screen for Genetic Adaptations. mSphere 3 (3) (2018)
JohnCarlo Kristofich, Andrew B Morgenthaler, Wallis R Kinney, Christopher C Ebmeier, Daniel J Snyder, William M Old, Vaughn S Cooper, Shelley D Copley
Synonymous mutations make dramatic contributions to fitness when growth is limited by a weak-link enzyme. PLoS genetics 14 (8) (2018)
Marcus M Dillon, Way Sung, Michael Lynch, Vaughn S Cooper
Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing. mBio 9 (4) (2018)
Kathy H Y Shair, Akhil Reddy, Vaughn S Cooper
New Insights from Elucidating the Role of LMP1 in Nasopharyngeal Carcinoma. Cancers 10 (4) (2018)
Melinda R Grosser, Elyse Paluscio, Lance R Thurlow, Marcus M Dillon, Vaughn S Cooper, Thomas H Kawula, Anthony R Richardson
Genetic requirements for Staphylococcus aureus nitric oxide resistance and virulence. PLoS pathogens 14 (3) (2018)
Inês N Silva, Filipa D Pessoa, Marcelo J Ramires, Mário R Santos, Jörg D Becker, Vaughn S Cooper, Leonilde M Moreira
The OmpR Regulator of Burkholderia multivorans Controls Mucoid-to-Nonmucoid Transition and Other Cell Envelope Properties Associated with Persistence in the Cystic Fibrosis Lung. Journal of bacteriology 200 (17) (2018)
Erin S Honsa, Vaughn S Cooper, Mohammed N Mhaissen, Matthew Frank, Jessica Shaker, Amy Iverson, Jeffrey Rubnitz, Randall T Hayden, Richard E Lee, Charles O Rock, Elaine I Tuomanen, Joshua Wolf, Jason W Rosch
RelA Mutant Enterococcus faecium with Multiantibiotic Tolerance Arising in an Immunocompromised Host. mBio 8 (1) (2017)
Aaron E Lucas, Ryota Ito, Mustapha M Mustapha, Christi L McElheny, Roberta T Mettus, Sarah L Bowler, Serena F Kantz, Marissa P Pacey, A William Pasculle, Vaughn S Cooper, Yohei Doi
Frequency and Mechanisms of Spontaneous Fosfomycin Nonsusceptibility Observed upon Disk Diffusion Testing of Escherichia coli. Journal of clinical microbiology 56 (1) (2017)
Feng Xu, Narjol Gonzalez-Escalona, Kevin P Drees, Robert P Sebra, Vaughn S Cooper, Stephen H Jones, Cheryl A Whistler
Parallel Evolution of Two Clades of an Atlantic-Endemic Pathogenic Lineage of Vibrio parahaemolyticus by Independent Acquisition of Related Pathogenicity Islands. Applied and environmental microbiology 83 (18) (2017)
Marcus M Dillon, Vaughn S Cooper
The Fitness Effects of Spontaneous Mutations Nearly Unseen by Selection in a Bacterium with Multiple Chromosomes. Genetics 204 (3) (2016)
Kenneth M Flynn, Gabrielle Dowell, Thomas M Johnson, Benjamin J Koestler, Christopher M Waters, Vaughn S Cooper
Evolution of Ecological Diversity in Biofilms of Pseudomonas aeruginosa by Altered Cyclic Diguanylate Signaling. Journal of bacteriology 198 (19) (2016)
Feng Xu, Narjol Gonzalez-Escalona, Julie Haendiges, Robert A Myers, Jana Ferguson, Tracy Stiles, Eric Hickey, Michael Moore, John Michael Hickey, Christopher Schillaci, Laurn Mank, Kristin DeRosia-Banick, Nicholas Matluk, Amy Robbins, Robert P Sebra, Vaughn S Cooper, Stephen H Jones, Cheryl A Whistler
Sequence Type 631 Vibrio parahaemolyticus, an Emerging Foodborne Pathogen in North America. Journal of clinical microbiology 55 (2) (2016)
Marivic Martin, Theresa Hölscher, Anna Dragoš, Vaughn S Cooper, Ákos T Kovács
Laboratory Evolution of Microbial Interactions in Bacterial Biofilms. Journal of bacteriology 198 (19) (2016)
Qinglan Guo, Baixing Ding, Thomas Jové, Nicole E Stoesser, Vaughn S Cooper, Minggui Wang, Yohei Doi
Characterization of a Novel IncHI2 Plasmid Carrying Tandem Copies of blaCTX-M-2 in a fosA6-Harboring Escherichia coli Sequence Type 410 Strain. Antimicrobial agents and chemotherapy 60 (11) (2016)
Inês N Silva, Pedro Miguel Santos, Mário R Santos, James E A Zlosnik, David P Speert, Sean W Buskirk, Eric L Bruger, Christopher M Waters, Vaughn S Cooper, Leonilde M Moreira
Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection. mSystems 1 (3) (2016)
Marcus M Dillon, Way Sung, Michael Lynch, Vaughn S Cooper
The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia. Genetics 200 (3) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Vaughn S Cooper (Vaughn Cooper)