Alejandro A Schäffer (Alejandro A Schaffer)

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 42

Top Venues

Nature communications

medRxiv : the preprint server for health sciences

Nature cancer

Cancers

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Stanford University

United States

PHD

Carnegie Mellon University

United States

BSC

Publications

Ashwin V Kammula, Alejandro A Schäffer, Padma Sheila Rajagopal, Razelle Kurzrock, Eytan Ruppin
Outcome differences by sex in oncology clinical trials. Nature communications 15 (1) (2024)
Sanju Sinha, Rahulsimham Vegesna, Sumit Mukherjee, Ashwin V Kammula, Saugato Rahman Dhruba, Wei Wu, D Lucas Kerr, Nishanth Ulhas Nair, Matthew G Jones, Nir Yosef, Oleg V Stroganov, Ivan Grishagin, Kenneth D Aldape, Collin M Blakely, Peng Jiang, Craig J Thomas, Cyril H Benes, Trever G Bivona, Alejandro A Schäffer, Eytan Ruppin
PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors. Nature cancer 5 (6) (2024)
Sanju Sinha, Rahulsimham Vegesna, Sumit Mukherjee, Ashwin V Kammula, Saugato Rahman Dhruba, Wei Wu, D Lucas Kerr, Nishanth Ulhas Nair, Matthew G Jones, Nir Yosef, Oleg V Stroganov, Ivan Grishagin, Kenneth D Aldape, Collin M Blakely, Peng Jiang, Craig J Thomas, Cyril H Benes, Trever G Bivona, Alejandro A Schäffer, Eytan Ruppin
PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors. Nature cancer 5 (6) (2024)
Ashwin V Kammula, Alejandro A Schäffer, Padma Sheila Rajagopal, Razelle Kurzrock, Eytan Ruppin
Outcome differences by sex in oncology clinical trials. Nature communications 15 (1) (2024)
Welles Robinson, Joshua K Stone, Fiorella Schischlik, Billel Gasmi, Michael C Kelly, Charlie Seibert, Kimia Dadkhah, Edward Michael Gertz, Joo Sang Lee, Kaiyuan Zhu, Lichun Ma, Xin Wei Wang, S Cenk Sahinalp, Rob Patro, Mark D M Leiserson, Curtis C Harris, Alejandro A Schäffer, Eytan Ruppin
Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-Microbes. Science advances 10 (27) (2024)
Ashwin V Kammula, Alejandro A Schäffer, Padma Sheila Rajagopal, Razelle Kurzrock, Eytan Ruppin
Outcome differences by sex in oncology clinical trials. Nature communications 15 (1) (2024)
Nishanth Ulhas Nair, Alejandro A Schäffer, Edward Michael Gertz, Kuoyuan Cheng, Johanna Zerbib, Avinash Das Sahu, Gil Leor, Eldad David Shulman, Kenneth D Aldape, Uri Ben-David, Eytan Ruppin
Chromosome 7 gain compensates for chromosome 10 loss in glioma. Cancer research (2024)
Sanju Sinha, Rahulsimham Vegesna, Sumit Mukherjee, Ashwin V Kammula, Saugato Rahman Dhruba, Wei Wu, D Lucas Kerr, Nishanth Ulhas Nair, Matthew G Jones, Nir Yosef, Oleg V Stroganov, Ivan Grishagin, Kenneth D Aldape, Collin M Blakely, Peng Jiang, Craig J Thomas, Cyril H Benes, Trever G Bivona, Alejandro A Schäffer, Eytan Ruppin
PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors. Nature cancer (2024)
Welles Robinson, Joshua K Stone, Fiorella Schischlik, Billel Gasmi, Michael C Kelly, Charlie Seibert, Kimia Dadkhah, Edward Michael Gertz, Joo Sang Lee, Kaiyuan Zhu, Lichun Ma, Xin Wei Wang, S Cenk Sahinalp, Rob Patro, Mark D M Leiserson, Curtis C Harris, Alejandro A Schäffer, Eytan Ruppin
Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-Microbes. Science advances 10 (27) (2024)
Sanju Sinha, Rahulsimham Vegesna, Sumit Mukherjee, Ashwin V Kammula, Saugato Rahman Dhruba, Wei Wu, D Lucas Kerr, Nishanth Ulhas Nair, Matthew G Jones, Nir Yosef, Oleg V Stroganov, Ivan Grishagin, Kenneth D Aldape, Collin M Blakely, Peng Jiang, Craig J Thomas, Cyril H Benes, Trever G Bivona, Alejandro A Schäffer, Eytan Ruppin
PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors. Nature cancer (2024)
A Xavier Garcia, Jielin Xu, Feixiong Cheng, Eytan Ruppin, Alejandro A Schäffer
Altered gene expression in excitatory neurons is associated with Alzheimer's disease and its higher incidence in women. Alzheimer's & dementia (New York, N. Y.) 9 (1) (2023)
Tian-Gen Chang, Yingying Cao, Eldad David Shulman, Uri Ben-David, Alejandro A Schäffer, Eytan Ruppin
Optimizing cancer immunotherapy response prediction by tumor aneuploidy score and fraction of copy number alterations. NPJ precision oncology 7 (1) (2023)
Abdurrahman Elbasir, Ying Ye, Daniel E Schäffer, Xue Hao, Jayamanna Wickramasinghe, Konstantinos Tsingas, Paul M Lieberman, Qi Long, Quaid D Morris, Rugang Zhang, Alejandro A Schäffer, Noam Auslander
A deep learning approach reveals unexplored landscape of viral expression in cancer. Nature communications 14 (1) (2023)
Ariel Israel, Alejandro A Schäffer, Matitiahu Berkovitch, David J Ozeri, Eugene Merzon, Ilan Green, Avivit Golan Cohen, Eytan Ruppin, Shlomo Vinker, Eli Magen
Glucose-6-Phosphate Dehydrogenase (G6PD) Deficiency and Long-Term Risk of Immune-Related diseases. medRxiv : the preprint server for health sciences (2023)
Abdurrahman Elbasir, Ying Ye, Daniel E Schäffer, Xue Hao, Jayamanna Wickramasinghe, Konstantinos Tsingas, Paul M Lieberman, Qi Long, Quaid D Morris, Rugang Zhang, Alejandro A Schäffer, Noam Auslander
A deep learning approach reveals unexplored landscape of viral expression in cancer. Nature communications 14 (1) (2023)
Ariel Israel, Alejandro A Schäffer, Matitiahu Berkovitch, David J Ozeri, Eugene Merzon, Ilan Green, Avivit Golan Cohen, Eytan Ruppin, Shlomo Vinker, Eli Magen
Glucose-6-Phosphate Dehydrogenase (G6PD) Deficiency and Long-Term Risk of Immune-Related diseases. medRxiv : the preprint server for health sciences (2023)
A Xavier Garcia, Jielin Xu, Feixiong Cheng, Eytan Ruppin, Alejandro A Schäffer
Altered gene expression in excitatory neurons is associated with Alzheimer's disease and its higher incidence in women. Alzheimer's & dementia (New York, N. Y.) 9 (1) (2023)
Abdurrahman Elbasir, Ying Ye, Daniel E Schäffer, Xue Hao, Jayamanna Wickramasinghe, Konstantinos Tsingas, Paul M Lieberman, Qi Long, Quaid D Morris, Rugang Zhang, Alejandro A Schäffer, Noam Auslander
A deep learning approach reveals unexplored landscape of viral expression in cancer. Nature communications 14 (1) (2023)
Ariel Israel, Alejandro A Schäffer, Matitiahu Berkovitch, David J Ozeri, Eugene Merzon, Ilan Green, Avivit Golan Cohen, Eytan Ruppin, Shlomo Vinker, Eli Magen
Glucose-6-Phosphate Dehydrogenase (G6PD) Deficiency and Long-Term Risk of Immune-Related diseases. medRxiv : the preprint server for health sciences (2023)
Abdurrahman Elbasir, Ying Ye, Daniel E Schäffer, Xue Hao, Jayamanna Wickramasinghe, Konstantinos Tsingas, Paul M Lieberman, Qi Long, Quaid D Morris, Rugang Zhang, Alejandro A Schäffer, Noam Auslander
A deep learning approach reveals unexplored landscape of viral expression in cancer. Nature communications 14 (1) (2023)
Sanna Madan, Sanju Sinha, Tiangen Chang, J Silvio Gutkind, Ezra E W Cohen, Alejandro A Schäffer, Eytan Ruppin
Pan-Cancer Analysis of Patient Tumor Single-Cell Transcriptomes Identifies Promising Selective and Safe Chimeric Antigen Receptor Targets in Head and Neck Cancer. Cancers 15 (19) (2023)
Abdurrahman Elbasir, Ying Ye, Daniel E Schäffer, Xue Hao, Jayamanna Wickramasinghe, Konstantinos Tsingas, Paul M Lieberman, Qi Long, Quaid D Morris, Rugang Zhang, Alejandro A Schäffer, Noam Auslander
A deep learning approach reveals unexplored landscape of viral expression in cancer. Nature communications 14 (1) (2023)
Abdurrahman Elbasir, Ying Ye, Daniel E Schäffer, Xue Hao, Jayamanna Wickramasinghe, Konstantinos Tsingas, Paul M Lieberman, Qi Long, Quaid D Morris, Rugang Zhang, Alejandro A Schäffer, Noam Auslander
A deep learning approach reveals unexplored landscape of viral expression in cancer. Nature communications 14 (1) (2023)
Ariel Israel, Alejandro A Schäffer, Matitiahu Berkovitch, David J Ozeri, Eugene Merzon, Ilan Green, Avivit Golan Cohen, Eytan Ruppin, Shlomo Vinker, Eli Magen
Glucose-6-Phosphate Dehydrogenase (G6PD) Deficiency and Long-Term Risk of Immune-Related diseases. medRxiv : the preprint server for health sciences (2023)
Kun Wang, Sushant Patkar, Joo Sang Lee, Edward Michael Gertz, Welles Robinson, Fiorella Schischlik, David R Crawford, Alejandro A Schäffer, Eytan Ruppin
Deconvolving Clinically Relevant Cellular Immune Cross-talk from Bulk Gene Expression Using CODEFACS and LIRICS Stratifies Patients with Melanoma to Anti-PD-1 Therapy. Cancer discovery 12 (4) (2022)
David R Crawford, Sanju Sinha, Nishanth Ulhas Nair, Bríd M Ryan, Jill S Barnholtz-Sloan, Stephen M Mount, Ayelet Erez, Kenneth Aldape, Philip E Castle, Padma S Rajagopal, Chi-Ping Day, Alejandro A Schäffer, Eytan Ruppin
Sex Biases in Cancer and Autoimmune Disease Incidence Are Strongly Positively Correlated with Mitochondrial Gene Expression across Human Tissues. Cancers 14 (23) (2022)
Ariel Israel, Alejandro A Schäffer, Eugene Merzon, Ilan Green, Eli Magen, Avivit Golan-Cohen, Shlomo Vinker, Eytan Ruppin
A Calculator for COVID-19 Severity Prediction Based on Patient Risk Factors and Number of Vaccines Received. Microorganisms 10 (6) (2022)
David R Crawford, Sanju Sinha, Nishanth Ulhas Nair, Bríd M Ryan, Jill S Barnholtz-Sloan, Stephen M Mount, Ayelet Erez, Kenneth Aldape, Philip E Castle, Padma S Rajagopal, Chi-Ping Day, Alejandro A Schäffer, Eytan Ruppin
Sex Biases in Cancer and Autoimmune Disease Incidence Are Strongly Positively Correlated with Mitochondrial Gene Expression across Human Tissues. Cancers 14 (23) (2022)
Neelam Sinha, Sanju Sinha, Cristina Valero, Alejandro A Schäffer, Kenneth D Aldape, Kevin Litchfield, Timothy A Chan, Luc G T Morris, Eytan Ruppin
Immune Determinants of the Association between Tumor Mutational Burden and Immunotherapy Response across Cancer Types. Cancer research 82 (11) (2022)
Kaiyuan Zhu, Alejandro A Schäffer, Welles Robinson, Junyan Xu, Eytan Ruppin, A Funda Ergun, Yuzhen Ye, S Cenk Sahinalp
Strain level microbial detection and quantification with applications to single cell metagenomics. Nature communications 13 (1) (2022)
Ariel Israel, Alejandro A Schäffer, Eugene Merzon, Ilan Green, Eli Magen, Avivit Golan Cohen, Shlomo Vinker, Eytan Ruppin
Predicting COVID-19 severity using major risk factors and received vaccines. medRxiv : the preprint server for health sciences (2022)
Saba Ahmadi, Pattara Sukprasert, Rahulsimham Vegesna, Sanju Sinha, Fiorella Schischlik, Natalie Artzi, Samir Khuller, Alejandro A Schäffer, Eytan Ruppin
The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective. Nature communications 13 (1) (2022)
David R Crawford, Sanju Sinha, Nishanth Ulhas Nair, Bríd M Ryan, Jill S Barnholtz-Sloan, Stephen M Mount, Ayelet Erez, Kenneth Aldape, Philip E Castle, Padma S Rajagopal, Chi-Ping Day, Alejandro A Schäffer, Eytan Ruppin
Sex Biases in Cancer and Autoimmune Disease Incidence Are Strongly Positively Correlated with Mitochondrial Gene Expression across Human Tissues. Cancers 14 (23) (2022)
Ariel Israel, Eugene Merzon, Yotam Shenhar, Ilan Green, Avivit Golan Cohen, Alejandro A Schäffer, Eytan Ruppin, Shlomo Vinker, Eli Magen
Clinical and Laboratory Features in the Israeli Population with COVID-19 Infection after Pfizer-BioNTech mRNA Booster Vaccination. Vaccines 10 (5) (2022)
Ariel Israel, Eugene Merzon, Alejandro A Schäffer, Yotam Shenhar, Ilan Green, Avivit Golan Cohen, Eytan Ruppin, Eli Magen, Shlomo Vinker
Elapsed time since BNT162b2 vaccine and risk of SARS-CoV-2 infection: test negative design study. BMJ (Clinical research ed.) 375 (2021)
Ariel Israel, Alejandro A Schäffer, Assi Cicurel, Kuoyuan Cheng, Sanju Sinha, Eyal Schiff, Ilan Feldhamer, Ameer Tal, Gil Lavie, Eytan Ruppin
Identification of drugs associated with reduced severity of COVID-19 - a case-control study in a large population. eLife 10 (2021)
Noam Auslander, Daniel M Ramos, Ivette Zelaya, Hiren Karathia, Thomas O Crawford, Alejandro A Schäffer, Charlotte J Sumner, Eytan Ruppin
The GENDULF algorithm: mining transcriptomics to uncover modifier genes for monogenic diseases. Molecular systems biology 16 (12) (2021)
Ariel Israel, Yotam Shenhar, Ilan Green, Eugene Merzon, Avivit Golan-Cohen, Alejandro A Schäffer, Eytan Ruppin, Shlomo Vinker, Eli Magen
Large-Scale Study of Antibody Titer Decay following BNT162b2 mRNA Vaccine or SARS-CoV-2 Infection. Vaccines 10 (1) (2021)
Ariel Israel, Alejandro A Schäffer, Assi Cicurel, Ilan Feldhamer, Ameer Tal, Kuoyuan Cheng, Sanju Sinha, Eyal Schiff, Gil Lavie, Eytan Ruppin
Identification of drugs associated with reduced severity of COVID-19: A case-control study in a large population. medRxiv : the preprint server for health sciences (2021)
Ariel Israel, Yotam Shenhar, Ilan Green, Eugene Merzon, Avivit Golan-Cohen, Alejandro A Schäffer, Eytan Ruppin, Shlomo Vinker, Eli Magen
Large-scale study of antibody titer decay following BNT162b2 mRNA vaccine or SARS-CoV-2 infection. medRxiv : the preprint server for health sciences (2021)
Sanju Sinha, Kuoyuan Cheng, Alejandro A Schäffer, Kenneth Aldape, Eyal Schiff, Eytan Ruppin
In vitro and in vivo identification of clinically approved drugs that modify ACE2 expression. Molecular systems biology 16 (7) (2020)
Stefanie Frey-Jakobs, Julia M Hartberger, Manfred Fliegauf, Claudia Bossen, Magdalena L Wehmeyer, Johanna C Neubauer, Alla Bulashevska, Michele Proietti, Philipp Fröbel, Christina Nöltner, Linlin Yang, Jessica Rojas-Restrepo, Niko Langer, Sandra Winzer, Karin R Engelhardt, Cristina Glocker, Dietmar Pfeifer, Adi Klein, Alejandro A Schäffer, Irina Lagovsky, Idit Lachover-Roth, Vivien Béziat, Anne Puel, Jean Laurent Casanova, Bernhard Fleckenstein, Stephan Weidinger, Sara Sebnem Kilic, Ben-Zion Garty, Amos Etzioni, Bodo Grimbacher
ZNF341 controls STAT3 expression and thereby immunocompetence. Science immunology 3 (24) (2019)

Alejandro A Schäffer.css-eqlu8i{font-size:small;padding-left:4px;} (Alejandro A Schaffer)

Publication Activity (10 Years)

Top Topics

Top Venues

Alejandro A Schäffer (Alejandro A Schaffer)