Daniel R Mende

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 18

Top Venues

NPJ biofilms and microbiomes

PLoS medicine

Nucleic acids research

Access microbiology

University of Hawai'i at Manoa

European Molecular Biology Laboratory (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Hawai'i at Manoa Sep 03 2014

United States

Post-Doc :: C-MORE

European Molecular Biology Laboratory Aug 01 2013 - May 01 2014

Germany

PostDoc (Bridging) :: SCB

Education History

European Molecular Biology Laboratory May 01 2009 - Jul 23 2013

Germany

PHD :: SCB

Publications

Boas C L Van Der Putten, Jarne M van Hattem, John Penders, Combat Consortium, Daniel R Mende, Constance Schultsz
Extra-intestinal pathogenic lineages of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli are associated with prolonged ESBL gene carriage. Access microbiology 6 (2) (2024)
Boas C L Van Der Putten, Jarne M van Hattem, John Penders, Combat Consortium, Daniel R Mende, Constance Schultsz
Extra-intestinal pathogenic lineages of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli are associated with prolonged ESBL gene carriage. Access microbiology 6 (2) (2024)
Mwelwa Chibuye, Daniel R Mende, Rene Spijker, Michelo Simuyandi, Charlie Chaluma Luchen, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Vanessa C Harris
Systematic review of associations between gut microbiome composition and stunting in under-five children. NPJ biofilms and microbiomes 10 (1) (2024)
Mwelwa Chibuye, Daniel R Mende, Rene Spijker, Michelo Simuyandi, Charlie Chaluma Luchen, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Vanessa C Harris
Systematic review of associations between gut microbiome composition and stunting in under-five children. NPJ biofilms and microbiomes 10 (1) (2024)
Mwelwa Chibuye, Daniel R Mende, Rene Spijker, Michelo Simuyandi, Charlie Chaluma Luchen, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Vanessa C Harris
Systematic review of associations between gut microbiome composition and stunting in under-five children. NPJ biofilms and microbiomes 10 (1) (2024)
Mwelwa Chibuye, Daniel R Mende, Rene Spijker, Michelo Simuyandi, Charlie Chaluma Luchen, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Vanessa C Harris
Systematic review of associations between gut microbiome composition and stunting in under-five children. NPJ biofilms and microbiomes 10 (1) (2024)
Charlie Chaluma Luchen, Mwelwa Chibuye, Rene Spijker, Michelo Simuyandi, Caroline Cleopatra Chisenga, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Daniel R Mende, Vanessa C Harris
Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review. PLoS medicine 20 (6) (2023)
Charlie Chaluma Luchen, Mwelwa Chibuye, Rene Spijker, Michelo Simuyandi, Caroline Cleopatra Chisenga, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Daniel R Mende, Vanessa C Harris
Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review. PLoS medicine 20 (6) (2023)
Charlie Chaluma Luchen, Mwelwa Chibuye, Rene Spijker, Michelo Simuyandi, Caroline Cleopatra Chisenga, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Daniel R Mende, Vanessa C Harris
Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review. PLoS medicine 20 (6) (2023)
Charlie Chaluma Luchen, Mwelwa Chibuye, Rene Spijker, Michelo Simuyandi, Caroline Cleopatra Chisenga, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Daniel R Mende, Vanessa C Harris
Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review. PLoS medicine 20 (6) (2023)
Thomas Sebastian Benedikt Schmidt, Anthony Fullam, Pamela Ferretti, Askarbek Orakov, Oleksandr M Maistrenko, Hans-Joachim Ruscheweyh, Ivica Letunic, Yiqian Duan, Thea Van Rossum, Shinichi Sunagawa, Daniel R Mende, Robert D Finn, Michael Kuhn, Luis Pedro Coelho, Peer Bork
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource. Nucleic acids research (2023)
Ana Hernández-Plaza, Damian Szklarczyk, Jorge Botas, Carlos P Cantalapiedra, Joaquín Giner-Lamia, Daniel R Mende, Rebecca Kirsch, Thomas Rattei, Ivica Letunic, Lars Juhl Jensen, Peer Bork, Christian von Mering, Huerta-Cepas Jaime
eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic acids research (2022)
Daniel Muratore, Angela K Boysen, Matthew J Harke, Kevin W Becker, John R Casey, Sacha N Coesel, Daniel R Mende, Samuel T Wilson, Frank O'Neill Aylward, John M Eppley, Alice Vislova, Shengyun Peng, Rogelio A Rodriguez-Gonzalez, Stephen J Beckett, E Virginia Armbrust, Edward F DeLong, David M Karl, Angelicque E White, Jonathan P Zehr, Benjamin A S Van Mooy, Sonya T Dyhrman, Anitra E Ingalls, Joshua S Weitz
Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. Nature ecology & evolution 6 (2) (2022)
Anthony Fullam, Ivica Letunic, Thomas Sebastian Benedikt Schmidt, Quinten R Ducarmon, Nicolai Karcher, Supriya Khedkar, Michael Kuhn, Martin Larralde, Oleksandr M Maistrenko, Lukas Malfertheiner, Alessio Milanese, Joao Frederico Matias Rodrigues, Claudia Sanchis-López, Christian Schudoma, Damian Szklarczyk, Shinichi Sunagawa, Georg Zeller, Huerta-Cepas Jaime, Christian von Mering, Peer Bork, Daniel R Mende
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. Nucleic acids research (2022)
Luis Pedro Coelho, Renato Jc Alves, Rodríguez Del Río Álvaro, Pernille Neve Myers, Carlos P Cantalapiedra, Joaquín Giner-Lamia, Thomas Sebastian Schmidt, Daniel R Mende, Askarbek Orakov, Ivica Letunic, Falk Hildebrand, Thea Van Rossum, Sofia Kirke Forslund-Startceva, Supriya Khedkar, Oleksandr M Maistrenko, Shaojun Pan, Longhao Jia, Pamela Ferretti, Shinichi Sunagawa, Xing-Ming Zhao, Henrik Bjørn Nielsen, Huerta-Cepas Jaime, Peer Bork
Towards the biogeography of prokaryotic genes. Nature 601 (7892) (2021)
Elaine Luo, John M Eppley, Anna E Romano, Daniel R Mende, Edward F DeLong
Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column. The ISME journal 14 (5) (2020)
Alessio Milanese, Daniel R Mende, Lucas Paoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Miguelangel Cuenca, Pascal Hingamp, Renato Jc Alves, Paul Igor Costea, Luis Pedro Coelho, Thomas Sebastian Benedikt Schmidt, Alexandre Almeida, Alex L Mitchell, Robert D Finn, Jaime Huerta-Cepas, Peer Bork, Georg Zeller, Shinichi Sunagawa
Microbial abundance, activity and population genomic profiling with mOTUs2. Nature communications 10 (1) (2019)
Daniel R Mende, Jessica A Bryant, Frank O Aylward, John M Eppley, Torben Nielsen, David M Karl, Edward F DeLong
Environmental drivers of a microbial genomic transition zone in the ocean's interior. Nature microbiology 2 (10) (2017)

Daniel R Mende.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Daniel R Mende