Jason D Buenrostro

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 25

Top Topics

Gene Expression

Neural Stem Cells

High Throughput Sequencing

Top Venues

Nature communications

Nature immunology

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

David T Scadden, Vinay Kartha, Fabiana M Duarte, Trine A Kristiansen, Christina Mayerhofer, Rojesh Shrestha, Andrew Scott Earl, Yan Hu, Tristan Tay, Catherine Rhee, Jason D Buenrostro, David T Scadden
Cell of origin epigenetic priming determines susceptibility to Tet2 mutation. Nature communications 15 (1) (2024)
David T Scadden, Vinay Kartha, Fabiana M Duarte, Trine A Kristiansen, Christina Mayerhofer, Rojesh Shrestha, Andrew Scott Earl, Yan Hu, Tristan Tay, Catherine Rhee, Jason D Buenrostro, David T Scadden
Cell of origin epigenetic priming determines susceptibility to Tet2 mutation. Nature communications 15 (1) (2024)
David T Scadden, Vinay Kartha, Fabiana M Duarte, Trine A Kristiansen, Christina Mayerhofer, Rojesh Shrestha, Andrew Scott Earl, Yan Hu, Tristan Tay, Catherine Rhee, Jason D Buenrostro, David T Scadden
Cell of origin epigenetic priming determines susceptibility to Tet2 mutation. Nature communications 15 (1) (2024)
David T Scadden, Vinay Kartha, Fabiana M Duarte, Trine A Kristiansen, Christina Mayerhofer, Rojesh Shrestha, Andrew Scott Earl, Yan Hu, Tristan Tay, Catherine Rhee, Jason D Buenrostro, David T Scadden
Cell of origin epigenetic priming determines susceptibility to Tet2 mutation. Nature communications 15 (1) (2024)
Pratiksha I Thakore, Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian, Sarah Zaghouani, Chao Wang, Vasundhara Singh, Anvita Singaraju, Rajesh Kumar Krishnan, Deneen Kozoriz, Sai Ma, Venkat Sankar, Samuele Notarbartolo, Jason D Buenrostro, Federica Sallusto, Nikolaos A Patsopoulos, Orit Rozenblatt-Rosen, Vijay K Kuchroo, Aviv Regev
BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells. Nature immunology 25 (8) (2024)
Pratiksha I Thakore, Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian, Sarah Zaghouani, Chao Wang, Vasundhara Singh, Anvita Singaraju, Rajesh Kumar Krishnan, Deneen Kozoriz, Sai Ma, Venkat Sankar, Samuele Notarbartolo, Jason D Buenrostro, Federica Sallusto, Nikolaos A Patsopoulos, Orit Rozenblatt-Rosen, Vijay K Kuchroo, Aviv Regev
BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells. Nature immunology 25 (8) (2024)
Pratiksha I Thakore, Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian, Sarah Zaghouani, Chao Wang, Vasundhara Singh, Anvita Singaraju, Rajesh Kumar Krishnan, Deneen Kozoriz, Sai Ma, Venkat Sankar, Samuele Notarbartolo, Jason D Buenrostro, Federica Sallusto, Nikolaos A Patsopoulos, Orit Rozenblatt-Rosen, Vijay K Kuchroo, Aviv Regev
BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells. Nature immunology (2024)
Pratiksha I Thakore, Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian, Sarah Zaghouani, Chao Wang, Vasundhara Singh, Anvita Singaraju, Rajesh Kumar Krishnan, Deneen Kozoriz, Sai Ma, Venkat Sankar, Samuele Notarbartolo, Jason D Buenrostro, Federica Sallusto, Nikolaos A Patsopoulos, Orit Rozenblatt-Rosen, Vijay K Kuchroo, Aviv Regev
BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells. Nature immunology (2024)
Sarah M Mangiameli, Haiqi Chen, Andrew Scott Earl, Julie A Dobkin, Daniel Lesman, Jason D Buenrostro, Fei Chen
Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. Nature methods (2023)
Sarah M Mangiameli, Haiqi Chen, Andrew Scott Earl, Julie A Dobkin, Daniel Lesman, Jason D Buenrostro, Fei Chen
Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. Nature methods 20 (5) (2023)
Florian V De Rop, Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens, Carmen Bravo González-Blas, Domenica Marchese, Ginevra Caratù, Suresh Poovathingal, Orit Rozenblatt-Rosen, Michael Slyper, Wendy Luo, Christoph Muus, Fabiana M Duarte, Rojesh Shrestha, S Tansu Bagdatli, M Ryan Corces, Lira Mamanova, Andrew Knights, Kerstin B Meyer, Ryan M Mulqueen, Akram Taherinasab, Patrick Maschmeyer, Joern Pezoldt, Camille Lucie Germaine Lambert, Marta Iglesias, Sebastián R Najle, Zain Y Dossani, Luciano G Martelotto, Zachary Daniel Burkett, Ronald Lebofsky, José Ignacio Martin-Subero, Satish Pillai, Arnau Sebé-Pedrós, Bart Deplancke, Sarah A Teichmann, Leif S Ludwig, Theodore P Braun, Andrew C Adey, William J Greenleaf, Jason D Buenrostro, Aviv Regev, Stein Aerts, Holger Heyn
Systematic benchmarking of single-cell ATAC-sequencing protocols. Nature biotechnology (2023)
Caleb A Lareau, Leif S Ludwig, Christoph Muus, Satyen H Gohil, Tongtong Zhao, Zachary Chiang, Karin Pelka, Jeffrey M Verboon, Wendy Luo, Elena Christian, Daniel Rosebrock, Gad A Getz, Genevieve M Boland, Fei Chen, Jason D Buenrostro, Nir Hacohen, Catherine J Wu, Martin J Aryee, Aviv Regev, Vijay G Sankaran
Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling. Nature biotechnology (2023)
Stamatis Papathanasiou, Nikos A Mynhier, Shiwei Liu, Gregory J Brunette, Ema Stokasimov, Etai Jacob, Lanting Li, Caroline Comenho, Bas van Steensel, Jason D Buenrostro, Cheng-Zhong Zhang, David Pellman
Heritable transcriptional defects from aberrations of nuclear architecture. Nature (2023)
Sarah M Mangiameli, Haiqi Chen, Andrew Scott Earl, Julie A Dobkin, Daniel Lesman, Jason D Buenrostro, Fei Chen
Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. Nature methods 20 (5) (2023)
Sarah M Mangiameli, Haiqi Chen, Andrew Scott Earl, Julie A Dobkin, Daniel Lesman, Jason D Buenrostro, Fei Chen
Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. Nature methods 20 (5) (2023)
Lindsay M LaFave, Jason D Buenrostro
Unlocking PDAC initiation with AP-1. Nature cancer 2 (1) (2022)
Avantika Lal, Zachary D Chiang, Nikolai Yakovenko, Fabiana M Duarte, Johnny Israeli, Jason D Buenrostro
Deep learning-based enhancement of epigenomics data with AtacWorks. Nature communications 12 (1) (2021)
Tongtong Zhao, Zachary D Chiang, Julia W Morriss, Lindsay M LaFave, Evan M Murray, Isabella Del Priore, Kevin Meli, Caleb A Lareau, Naeem M Nadaf, Jilong Li, Andrew Scott Earl, Evan Z Macosko, Tyler Jacks, Jason D Buenrostro, Fei Chen
Spatial genomics enables multi-modal study of clonal heterogeneity in tissues. Nature 601 (7891) (2021)
Samuel A Rose, Aleksandra Wroblewska, Maxime Dhainaut, Hideyuki Yoshida, Jonathan M Shaffer, Anela Bektesevic, Benjamin Ben-Zvi, Andrew Rhoads, Edy Y Kim, Bingfei Yu, Yonit Lavin, Miriam Merad, Jason D Buenrostro, Brian D Brown, null null
A microRNA expression and regulatory element activity atlas of the mouse immune system. Nature immunology 22 (7) (2021)
Andrew C Payne, Zachary D Chiang, Paul L Reginato, Sarah M Mangiameli, Evan M Murray, Chun-Chen Yao, Styliani Markoulaki, Andrew Scott Earl, Ajay S Labade, Rudolf Jaenisch, George M Church, Edward S Boyden, Jason D Buenrostro, Fei Chen
In situ genome sequencing resolves DNA sequence and structure in intact biological samples. Science (New York, N.Y.) 371 (6532) (2020)
Caleb A Lareau, Leif S Ludwig, Christoph Muus, Satyen H Gohil, Tongtong Zhao, Zachary Chiang, Karin Pelka, Jeffrey M Verboon, Wendy Luo, Elena Christian, Daniel Rosebrock, Gad A Getz, Genevieve M Boland, Fei Chen, Jason D Buenrostro, Nir Hacohen, Catherine J Wu, Martin J Aryee, Aviv Regev, Vijay G Sankaran
Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling. Nature biotechnology 39 (4) (2020)
Caleb A Lareau, Fabiana M Duarte, Jennifer G Chew, Vinay K Kartha, Zachary Daniel Burkett, Andrew S Kohlway, Dmitry Pokholok, Martin J Aryee, Frank J Steemers, Ronald Lebofsky, Jason D Buenrostro
Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility. Nature biotechnology 37 (8) (2019)
Jacob C Ulirsch, Caleb A Lareau, Erik L Bao, Leif S Ludwig, Michael H Guo, Christian Benner, Ansuman T Satpathy, Vinay K Kartha, Rany M Salem, Joel N Hirschhorn, Hilary K Finucane, Martin J Aryee, Jason D Buenrostro, Vijay G Sankaran
Interrogation of human hematopoiesis at single-cell and single-variant resolution. Nature genetics 51 (4) (2019)
Huidong Chen, Luca Albergante, Jonathan Y Hsu, Caleb A Lareau, Giosue' Lo Bosco, Jihong Guan, Shuigeng Zhou, Alexander N Gorban, Daniel E Bauer, Martin J Aryee, David M Langenau, Andrei Zinovyev, Jason D Buenrostro, Guo-Cheng Yuan, Luca Pinello
Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM. Nature communications 10 (1) (2019)
Efrat Shema, Bradley E Bernstein, Jason D Buenrostro
Single-cell and single-molecule epigenomics to uncover genome regulation at unprecedented resolution. Nature genetics 51 (1) (2018)