Arjun Krishnan

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 26

Top Venues

PLoS computational biology

Bioinformatics (Oxford, England)

bioRxiv : the preprint server for biology

Bioinformatics advances

Michigan State University

Virginia Polytechnic Institute and State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Michigan State University Jan 01 2017

United States

Assistant Professor :: Computational Mathematics, Science, and Engineering

Princeton University Oct 01 2011 - Dec 31 2016

United States

Associate Research Scholar :: Lewis-Sigler Institute for Integrative Genomics

Virginia Polytechnic Institute and State University

United States

Postdoctoral Researcher :: Virginia Bioinformatics Institute

Education History

Virginia Polytechnic Institute and State University

United States

PHD :: Genetics, Bioinformatics and Computational Biology

Publications

Marinka Zitnik, Michelle M Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Arjun Krishnan, T M Murali, Predrag Radivojac, Sushmita Roy, Anaïs Baudot, Serdar Bozdag, Danny Z Chen, Lenore J Cowen, Kapil Devkota, Anthony Gitter, Sara J C Gosline, Pengfei Gu, Pietro Hiram Guzzi, Heng Huang, Meng Jiang, Ziynet Nesibe Kesimoglu, Mehmet Koyuturk, Jian Ma, Alexander R Pico, Nataša Pržulj, Teresa M Przytycka, Benjamin J Raphael, Tunç Başar Köse, Roded Sharan, Yang Shen, Mona Singh, Donna K Slonim, Hanghang Tong, Xinan Holly Yang, Byung-Jun Yoon, Haiyuan Yu, Tijana Milenković
Current and future directions in network biology. Bioinformatics advances 4 (1) (2024)
Christopher A Mancuso, Kayla A Johnson, Renming Liu, Arjun Krishnan
Joint representation of molecular networks from multiple species improves gene classification. PLoS computational biology 20 (1) (2024)
Fabio Gomez Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika L Ellison, Lina Gomez, Arjun Krishnan, Springer M Nathan, Natalia de Leon, Erich Grotewold
Prioritizing Metabolic Gene Regulators through Multi-Omic Network Integration in Maize. bioRxiv : the preprint server for biology (2024)
Fabio Gomez Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika L Ellison, Lina Gomez, Arjun Krishnan, Springer M Nathan, Natalia de Leon, Erich Grotewold
Prioritizing Metabolic Gene Regulators through Multi-Omic Network Integration in Maize. bioRxiv : the preprint server for biology (2024)
Christopher A Mancuso, Kayla A Johnson, Renming Liu, Arjun Krishnan
Joint representation of molecular networks from multiple species improves gene classification. PLoS computational biology 20 (1) (2024)
Christopher A Mancuso, Kayla A Johnson, Renming Liu, Arjun Krishnan
Joint representation of molecular networks from multiple species improves gene classification. PLoS computational biology 20 (1) (2024)
Fabio Gomez Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika L Ellison, Lina Gomez, Arjun Krishnan, Springer M Nathan, Natalia de Leon, Erich Grotewold
Prioritizing Maize Metabolic Gene Regulators through Multi-Omic Network Integration. bioRxiv : the preprint server for biology (2024)
Christopher A Mancuso, Kayla A Johnson, Renming Liu, Arjun Krishnan
Joint representation of molecular networks from multiple species improves gene classification. PLoS computational biology 20 (1) (2024)
Christopher A Mancuso, Kayla A Johnson, Renming Liu, Arjun Krishnan
Joint representation of molecular networks from multiple species improves gene classification. PLoS computational biology 20 (1) (2024)
Marinka Zitnik, Michelle M Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Arjun Krishnan, T M Murali, Predrag Radivojac, Sushmita Roy, Anaïs Baudot, Serdar Bozdag, Danny Z Chen, Lenore J Cowen, Kapil Devkota, Anthony Gitter, Sara J C Gosline, Pengfei Gu, Pietro Hiram Guzzi, Heng Huang, Meng Jiang, Ziynet Nesibe Kesimoglu, Mehmet Koyuturk, Jian Ma, Alexander R Pico, Nataša Pržulj, Teresa M Przytycka, Benjamin J Raphael, Tunç Başar Köse, Roded Sharan, Yang Shen, Mona Singh, Donna K Slonim, Hanghang Tong, Xinan Holly Yang, Byung-Jun Yoon, Haiyuan Yu, Tijana Milenković
Current and future directions in network biology. Bioinformatics advances 4 (1) (2024)
Christopher A Mancuso, Kayla A Johnson, Renming Liu, Arjun Krishnan
Joint representation of molecular networks from multiple species improves gene classification. PLoS computational biology 20 (1) (2024)
Hao Yuan, Christopher A Mancuso, Kayla A Johnson, Ingo Braasch, Arjun Krishnan
Computational strategies for cross-species knowledge transfer and translational biomedicine. ArXiv (2024)
Christopher A Mancuso, Kayla A Johnson, Renming Liu, Arjun Krishnan
Joint representation of molecular networks from multiple species improves gene classification. PLoS computational biology 20 (1) (2024)
Fabio Gomez Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika L Ellison, Lina Gomez, Arjun Krishnan, Springer M Nathan, Natalia de Leon, Erich Grotewold
Prioritizing Metabolic Gene Regulators through Multi-Omic Network Integration in Maize. bioRxiv : the preprint server for biology (2024)
Christopher A Mancuso, Renming Liu, Arjun Krishnan
PyGenePlexus: a Python package for gene discovery using network-based machine learning. Bioinformatics (Oxford, England) 39 (2) (2023)
Christopher A Mancuso, Renming Liu, Arjun Krishnan
PyGenePlexus: a Python package for gene discovery using network-based machine learning. Bioinformatics (Oxford, England) 39 (2) (2023)
Renming Liu, Matthew J Hirn, Arjun Krishnan
Accurately modeling biased random walks on weighted networks using node2vec. Bioinformatics (Oxford, England) 39 (1) (2023)
Christopher A Mancuso, Renming Liu, Arjun Krishnan
PyGenePlexus: a Python package for gene discovery using network-based machine learning. Bioinformatics (Oxford, England) 39 (2) (2023)
Renming Liu, Matthew J Hirn, Arjun Krishnan
Accurately modeling biased random walks on weighted networks using node2vec. Bioinformatics (Oxford, England) 39 (1) (2023)
Sourabh Palande, Joshua A M Kaste, Miles D Roberts, Kenia Segura Abá, Carly Claucherty, Jamell Dacon, Rei Doko, Thilani B Jayakody, Hannah R Jeffery, Nathan Kelly, Andriana Manousidaki, Hannah M Parks, Emily M Roggenkamp, Ally M Schumacher, Jiaxin Yang, Sarah Percival, Jeremy Pardo, Aman Y Husbands, Arjun Krishnan, Beronda L Montgomery, Elizabeth Munch, Addie M Thompson, Alejandra Rougon-Cardoso, Daniel H Chitwood, Robert VanBuren
Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants. PLoS biology 21 (12) (2023)
Renming Liu, Matthew J Hirn, Arjun Krishnan
Accurately modeling biased random walks on weighted networks using node2vec. Bioinformatics (Oxford, England) 39 (1) (2023)
Nathaniel T Hawkins, Marc Maldaver, Anna Yannakopoulos, Lindsay A Guare, Arjun Krishnan
Systematic tissue annotations of genomics samples by modeling unstructured metadata. Nature communications 13 (1) (2022)
Christopher A Mancuso, Patrick S Bills, Douglas Krum, Jacob Newsted, Renming Liu, Arjun Krishnan
GenePlexus: a web-server for gene discovery using network-based machine learning. Nucleic acids research (2022)
Kayla A Johnson, Arjun Krishnan
Robust normalization and transformation techniques for constructing gene coexpression networks from RNA-seq data. Genome biology 23 (1) (2022)
Lucilla Pizzo, Micaela C Lasser, Tanzeen Yusuff, Matthew Jensen, Phoebe Ingraham, Emily Huber, Mayanglambam Dhruba Singh, Connor Monahan, Janani Iyer, Inshya Desai, Siddharth Karthikeyan, Dagny J Gould, Sneha Yennawar, Alexis T Weiner, Vijay Kumar Pounraja, Arjun Krishnan, Melissa M Rolls, Laura Anne Lowery, Santhosh D Girirajan
Functional assessment of the "two-hit" model for neurodevelopmental defects in Drosophila and X. laevis. PLoS genetics 17 (4) (2021)
Arjun Krishnan, Ran Zhang, Victoria Yao, Chandra L Theesfeld, Aaron K Wong, Alicja Tadych, Natalia Volfovsky, Alan Packer, Alex Lash, Olga G Troyanskaya
Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder. Nature neuroscience 19 (11) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Arjun Krishnan