Springer M Nathan (Nathan M Springer, Nathan Springer)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 42

Top Topics

Dna Methylation

Gene Expression

Top Venues

The Plant journal : for cell and molecular biology

Plant physiology

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Shawn M Kaeppler, Springer M Nathan
Remembering Ronald L. Phillips: Pioneer in crop biotechnology, mentor, and humanitarian. Proceedings of the National Academy of Sciences of the United States of America 121 (5) (2024)
Fabio Gomez Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika L Ellison, Lina Gomez, Arjun Krishnan, Springer M Nathan, Natalia de Leon, Erich Grotewold
Prioritizing Metabolic Gene Regulators through Multi-Omic Network Integration in Maize. bioRxiv : the preprint server for biology (2024)
Shawn M Kaeppler, Springer M Nathan
Remembering Ronald L. Phillips: Pioneer in crop biotechnology, mentor, and humanitarian. Proceedings of the National Academy of Sciences of the United States of America 121 (5) (2024)
Fabio Gomez Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika L Ellison, Lina Gomez, Arjun Krishnan, Springer M Nathan, Natalia de Leon, Erich Grotewold
Prioritizing Metabolic Gene Regulators through Multi-Omic Network Integration in Maize. bioRxiv : the preprint server for biology (2024)
Fabio Gomez Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika L Ellison, Lina Gomez, Arjun Krishnan, Springer M Nathan, Natalia de Leon, Erich Grotewold
Prioritizing Maize Metabolic Gene Regulators through Multi-Omic Network Integration. bioRxiv : the preprint server for biology (2024)
Shawn M Kaeppler, Springer M Nathan
Remembering Ronald L. Phillips: Pioneer in crop biotechnology, mentor, and humanitarian. Proceedings of the National Academy of Sciences of the United States of America 121 (5) (2024)
Yi-Hsuan Chu, Yun Sun Lee, Fabio Gomez Cano, Lina Gomez, Peng Zhou, Andrea I Doseff, Springer M Nathan, Erich Grotewold
Molecular mechanisms underlying gene regulatory variation of maize metabolic traits. The Plant cell (2024)
Fabio Gomez Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika L Ellison, Lina Gomez, Arjun Krishnan, Springer M Nathan, Natalia de Leon, Erich Grotewold
Prioritizing Metabolic Gene Regulators through Multi-Omic Network Integration in Maize. bioRxiv : the preprint server for biology (2024)
Zachary A Myers, Clair M Wootan, Zhikai Liang, Peng Zhou, Julia Engelhorn, Thomas Hartwig, Springer M Nathan
Conserved and variable heat stress responses of the Heat Shock Factor transcription factor family in maize and Setaria viridis . Plant direct 7 (4) (2023)
Manisha Munasinghe, Springer M Nathan, Yaniv Brandvain
Critical Role of Insertion Preference for Invasion Trajectory of Transposons. Evolution; international journal of organic evolution (2023)
Zachary A Myers, Clair M Wootan, Zhikai Liang, Peng Zhou, Julia Engelhorn, Thomas Hartwig, Springer M Nathan
Conserved and variable heat stress responses of the Heat Shock Factor transcription factor family in maize and Setaria viridis . Plant direct 7 (4) (2023)
Erika L Ellison, Peng Zhou, Peter Hermanson, Yi-Hsuan Chu, Andrew Read, Candice N Hirsch, Erich Grotewold, Springer M Nathan
Mutator transposon insertions within maize genes often provide a novel outward reading promoter. Genetics (2023)
Travis Wrightsman, Alexandre P Marand, Peter A Crisp, Springer M Nathan, Edward S Buckler
Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks. The plant genome 15 (3) (2022)
Andrew Read, Trevor Weiss, Peter A Crisp, Zhikai Liang, Jaclyn M Noshay, Claire C Menard, Chunfang Wang, Meredith Song, Candice N Hirsch, Springer M Nathan, Feng Zhang
Genome-wide loss of CHH methylation with limited transcriptome changes in Setaria viridis DOMAINS REARRANGED METHYLTRANSFERASE (DRM) mutants. The Plant journal : for cell and molecular biology 111 (1) (2022)
Jonathan I Gent, Kaitlin M Higgins, Kyle W Swentowsky, Fang-Fang Fu, Yibing Zeng, Dong Won Kim, R Kelly Dawe, Springer M Nathan, Sarah N Anderson
The maize gene maternal derepression of r1 encodes a DNA glycosylase that demethylates DNA and reduces siRNA expression in the endosperm. The Plant cell 34 (10) (2022)
Jaclyn M Noshay, Zhikai Liang, Peng Zhou, Peter A Crisp, Alexandre P Marand, Candice N Hirsch, Robert J Schmitz, Springer M Nathan
Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes. G3 (Bethesda, Md.) 11 (8) (2022)
Zhikai Liang, Zachary A Myers, Dominic P Petrella, Julia Engelhorn, Thomas Hartwig, Springer M Nathan
Mapping responsive genomic elements to heat stress in a maize diversity panel. Genome biology 23 (1) (2022)
Zhikai Liang, Sarah N Anderson, Jaclyn M Noshay, Peter A Crisp, Tara A Enders, Springer M Nathan
Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize. Plant physiology 186 (1) (2022)
Trevor Weiss, Peter A Crisp, Krishan Mohan Rai, Meredith Song, Springer M Nathan, Feng Zhang
Epigenetic features drastically impact CRISPR-Cas9 efficacy in plants. Plant physiology 190 (2) (2022)
Devon Birdseye, Laura A de Boer, Hua Bai, Peng Zhou, Zhouxin Shen, Eric A Schmelz, Springer M Nathan, Steven P Briggs
Plant height heterosis is quantitatively associated with expression levels of plastid ribosomal proteins. Proceedings of the National Academy of Sciences of the United States of America 118 (47) (2021)
Sarah N Anderson, Peng Zhou, Kaitlin M Higgins, Yaniv Brandvain, Springer M Nathan
Widespread imprinting of transposable elements and variable genes in the maize endosperm. PLoS genetics 17 (4) (2021)
Michelle C Stitzer, Sarah N Anderson, Springer M Nathan, Jeffrey Ross-Ibarra
The genomic ecosystem of transposable elements in maize. PLoS genetics 17 (10) (2021)
Jincheng Long, Jing-Han Liu, Aiai Xia, Springer M Nathan, Yan He
Maize decrease in DNA methylation 1 targets RNA-directed DNA methylation on active chromatin. The Plant cell 33 (7) (2021)
Yinjie Qiu, Christine H O'Connor, Rafael Della Coletta, Jonathan S Renk, Patrick J Monnahan, Jaclyn M Noshay, Zhikai Liang, Amanda Gilbert, Sarah N Anderson, Suzanne E McGaugh, Springer M Nathan, Candice N Hirsch
Whole-genome variation of transposable element insertions in a maize diversity panel. G3 (Bethesda, Md.) 11 (10) (2021)
Peng Zhou, Zhi Li, Erika L Ellison, Fabio Gomez Cano, Peter A Crisp, Jaclyn M Noshay, Erich Grotewold, Candice N Hirsch, Steven P Briggs, Springer M Nathan
Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions. The Plant cell 32 (5) (2020)
Peter A Crisp, Alexandre P Marand, Jaclyn M Noshay, Peng Zhou, Zefu Lu, Robert J Schmitz, Springer M Nathan
Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes. Proceedings of the National Academy of Sciences of the United States of America 117 (38) (2020)
Sara B Tirado, Candice N Hirsch, Springer M Nathan
UAV-based imaging platform for monitoring maize growth throughout development. Plant direct 4 (6) (2020)
Mei Zhang, Xuxu Ma, Chunyu Wang, Qing Li, Blake C Meyers, Springer M Nathan, Virginia Walbot
CHH DNA methylation increases at 24-PHAS loci depend on 24-nt phased small interfering RNAs in maize meiotic anthers. The New phytologist 229 (5) (2020)
Gen Xu, Jing Lyu, Qing Li, Han Liu, Dafang Wang, Mei Zhang, Springer M Nathan, Jeffrey Ross-Ibarra, Jinliang Yang
Evolutionary and functional genomics of DNA methylation in maize domestication and improvement. Nature communications 11 (1) (2020)
Trevor Weiss, Chunfang Wang, Xiaojun Kang, Hui Zhao, Maria Elena Gamo, Colby G Starker, Peter A Crisp, Peng Zhou, Springer M Nathan, Daniel F Voytas, Feng Zhang
Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis. The Plant journal : for cell and molecular biology 104 (3) (2020)
Zhi Li, Peng Zhou, Rafael Della Coletta, Tifu Zhang, Alex B Brohammer, Christine H O'Connor, Brieanne Vaillancourt, Anna Lipzen, Chris Daum, Kerrie Barry, Natalia de Leon, Cory D Hirsch, Carol Robin Buell, Shawn M Kaeppler, Springer M Nathan, Candice N Hirsch
Single-parent expression drives dynamic gene expression complementation in maize hybrids. The Plant journal : for cell and molecular biology 105 (1) (2020)
Peter A Crisp, Reza K Hammond, Peng Zhou, Brieanne Vaillancourt, Anna Lipzen, Chris Daum, Kerrie W Barry, Natalia de Leon, Carol Robin Buell, Shawn M Kaeppler, Blake C Meyers, Candice N Hirsch, Springer M Nathan
Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids. Plant physiology 182 (1) (2019)
Jaclyn M Noshay, Sarah N Anderson, Peng Zhou, Lexiang Ji, William Ricci, Zefu Lu, Michelle C Stitzer, Peter A Crisp, Candice N Hirsch, Xiaoyu Zhang, Robert J Schmitz, Springer M Nathan
Monitoring the interplay between transposable element families and DNA methylation in maize. PLoS genetics 15 (9) (2019)
Wei Xue, Sarah N Anderson, Xufeng Wang, Liyan Yang, Peter A Crisp, Qing Li, Jaclyn M Noshay, Patrice S Albert, James A Birchler, Paul Bilinski, Michelle C Stitzer, Jeffrey Ross-Ibarra, Sherry A Flint-Garcia, Xuemei Chen, Springer M Nathan, John F Doebley
Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize. Genetics 213 (1) (2019)
Sarah N Anderson, Michelle C Stitzer, Alex B Brohammer, Peng Zhou, Jaclyn M Noshay, Christine H O'Connor, Cory D Hirsch, Jeffrey Ross-Ibarra, Candice N Hirsch, Springer M Nathan
Transposable elements contribute to dynamic genome content in maize. The Plant journal : for cell and molecular biology 100 (5) (2019)
Sarah N Anderson, Michelle C Stitzer, Peng Zhou, Jeffrey Ross-Ibarra, Cory D Hirsch, Springer M Nathan
Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize. G3 (Bethesda, Md.) 9 (11) (2019)
Zhaoxue Han, Peter A Crisp, Scott Stelpflug, Shawn M Kaeppler, Qing Li, Springer M Nathan
Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture. Genetics 209 (4) (2018)
Sarah N Anderson, Gregory J Zynda, Jawon Song, Zhaoxue Han, Matthew W Vaughn, Qing Li, Springer M Nathan
Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways. G3 (Bethesda, Md.) 8 (6) (2018)
Alex B Brohammer, Thomas J Y Kono, Springer M Nathan, Suzanne E McGaugh, Candice N Hirsch
The limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines. The Plant journal : for cell and molecular biology 93 (1) (2017)
Fredy Altpeter, Springer M Nathan, Laura E Bartley, Ann E Blechl, Thomas P Brutnell, Vitaly Citovsky, Liza J Conrad, Stanton B Gelvin, David P Jackson, Albert P Kausch, Peggy G Lemaux, June I Medford, Martha L Orozco-Cárdenas, David M Tricoli, Joyce Van Eck, Daniel F Voytas, Virginia Walbot, Kan Wang, Zhanyuan J Zhang, Charles Neal Stewart
Advancing Crop Transformation in the Era of Genome Editing. The Plant cell 28 (7) (2016)
Springer M Nathan, Damon Lisch, Qing Li
Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes. The Plant cell 28 (2) (2016)
Candice N Hirsch, Cory D Hirsch, Alex B Brohammer, Megan J Bowman, Ilya Soifer, Omer Barad, Doron Shem-Tov, Kobi Baruch, Fei Lu, Alvaro G Hernandez, Christopher J Fields, Chris L Wright, Klaus Koehler, Springer M Nathan, Edward S Buckler, C Robin Buell, Natalia de Leon, Shawn M Kaeppler, Kevin L Childs, Mark A Mikel
Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize. The Plant cell 28 (11) (2016)
Qing Li, Jawon Song, Patrick T West, Gregory J Zynda, Steven R Eichten, Matthew W Vaughn, Springer M Nathan
Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize. Plant physiology 168 (4) (2015)
Steven R Eichten, Robert J Schmitz, Springer M Nathan
Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation. Plant physiology 165 (3) (2014)
Qing Li, Steven R Eichten, Peter J Hermanson, Virginia M Zaunbrecher, Jawon Song, Jennifer Wendt, Heidi Rosenbaum, Thelma F Madzima, Amy E Sloan, Ji Huang, Daniel L Burgess, Todd A Richmond, Karen M McGinnis, Robert B Meeley, Olga N Danilevskaya, Matthew W Vaughn, Shawn M Kaeppler, Jeffrey A Jeddeloh, Springer M Nathan
Genetic perturbation of the maize methylome. The Plant cell 26 (12) (2014)