Bernd Bodenmiller

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 43

Top Topics

Fluorescence Imaging

High Throughput

Top Venues

Nature communications

Nature reviews. Cancer

This page only lists publications with an associated author ORCID identifier.

Publications

Stefanie Kirchberger, Mohamed R Shoeb, Daria Lazic, Andrea Wenninger-Weinzierl, Kristin Fischer, Lisa Ellen Shaw, Filomena Nogueira, Firkret Rifatbegovic, Eva Bozsaky, Ruth Lydia Ladenstein, Bernd Bodenmiller, Thomas Lion, David Traver, Matthias Farlik, Christian Schöfer, Sabine Taschner-Mandl, Florian Halbritter, Martin Distel
Comparative transcriptomics coupled to developmental grading via transgenic zebrafish reporter strains identifies conserved features in neutrophil maturation. Nature communications 15 (1) (2024)
Spencer S Watson, Benoit Duc, Ziqi Kang, Axel de Tonnac, Nils Eling, Laure Font, Tristan Whitmarsh, Matteo Massara, null null, Bernd Bodenmiller, Jean Hausser, Johanna A Joyce
Microenvironmental reorganization in brain tumors following radiotherapy and recurrence revealed by hyperplexed immunofluorescence imaging. Nature communications 15 (1) (2024)
Geethika Arekatla, Stavroula Skylaki, David Corredor Suarez, Hartland Warren Jackson, Denis Schapiro, Stefanie Engler, Markus Auler, Germán Camargo Ortega, Simon Hastreiter, Andreas Reimann, Dirk Loeffler, Bernd Bodenmiller, Timm Schroeder
Identification of an embryonic differentiation stage marked by Sox1 and FoxA2 co-expression using combined cell tracking and high dimensional protein imaging. Nature communications 15 (1) (2024)
Natalie de Souza, Shan Zhao, Bernd Bodenmiller
Multiplex protein imaging in tumour biology. Nature reviews. Cancer 24 (3) (2024)
Natalie de Souza, Shan Zhao, Bernd Bodenmiller
Multiplex protein imaging in tumour biology. Nature reviews. Cancer (2024)
Spencer S Watson, Benoit Duc, Ziqi Kang, Axel de Tonnac, Nils Eling, Laure Font, Tristan Whitmarsh, Matteo Massara, null null, Bernd Bodenmiller, Jean Hausser, Johanna A Joyce
Microenvironmental reorganization in brain tumors following radiotherapy and recurrence revealed by hyperplexed immunofluorescence imaging. Nature communications 15 (1) (2024)
Spencer S Watson, Benoit Duc, Ziqi Kang, Axel de Tonnac, Nils Eling, Laure Font, Tristan Whitmarsh, Matteo Massara, null null, Bernd Bodenmiller, Jean Hausser, Johanna A Joyce
Microenvironmental reorganization in brain tumors following radiotherapy and recurrence revealed by hyperplexed immunofluorescence imaging. Nature communications 15 (1) (2024)
Natalie de Souza, Shan Zhao, Bernd Bodenmiller
Multiplex protein imaging in tumour biology. Nature reviews. Cancer 24 (3) (2024)
Stefanie Kirchberger, Mohamed R Shoeb, Daria Lazic, Andrea Wenninger-Weinzierl, Kristin Fischer, Lisa Ellen Shaw, Filomena Nogueira, Firkret Rifatbegovic, Eva Bozsaky, Ruth Lydia Ladenstein, Bernd Bodenmiller, Thomas Lion, David Traver, Matthias Farlik, Christian Schöfer, Sabine Taschner-Mandl, Florian Halbritter, Martin Distel
Comparative transcriptomics coupled to developmental grading via transgenic zebrafish reporter strains identifies conserved features in neutrophil maturation. Nature communications 15 (1) (2024)
Stefanie Kirchberger, Mohamed R Shoeb, Daria Lazic, Andrea Wenninger-Weinzierl, Kristin Fischer, Lisa Ellen Shaw, Filomena Nogueira, Firkret Rifatbegovic, Eva Bozsaky, Ruth Lydia Ladenstein, Bernd Bodenmiller, Thomas Lion, David Traver, Matthias Farlik, Christian Schöfer, Sabine Taschner-Mandl, Florian Halbritter, Martin Distel
Comparative transcriptomics coupled to developmental grading via transgenic zebrafish reporter strains identifies conserved features in neutrophil maturation. Nature communications 15 (1) (2024)
Natalie de Souza, Shan Zhao, Bernd Bodenmiller
Multiplex protein imaging in tumour biology. Nature reviews. Cancer (2024)
Spencer S Watson, Benoit Duc, Ziqi Kang, Axel de Tonnac, Nils Eling, Laure Font, Tristan Whitmarsh, Matteo Massara, null null, Bernd Bodenmiller, Jean Hausser, Johanna A Joyce
Microenvironmental reorganization in brain tumors following radiotherapy and recurrence revealed by hyperplexed immunofluorescence imaging. Nature communications 15 (1) (2024)
Sandra Tietscher, Johanna Wagner, Tobias Anzeneder, Claus Langwieder, Martin Rees, Bettina Sobottka, Natalie de Souza, Bernd Bodenmiller
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer. Nature communications 14 (1) (2023)
Lasse Meyer, Nils Eling, Bernd Bodenmiller
cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data. bioRxiv : the preprint server for biology (2023)
Merrick Strotton, Tsuyoshi Hosogane, Marco di Michiel, Holger Moch, Zsuzsanna Varga, Bernd Bodenmiller
Multielement Z-tag imaging by X-ray fluorescence microscopy for next-generation multiplex imaging. Nature methods (2023)
Sandra Tietscher, Johanna Wagner, Tobias Anzeneder, Claus Langwieder, Martin Rees, Bettina Sobottka, Natalie de Souza, Bernd Bodenmiller
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer. Nature communications 14 (1) (2023)
Sandra Tietscher, Johanna Wagner, Tobias Anzeneder, Claus Langwieder, Martin Rees, Bettina Sobottka, Natalie de Souza, Bernd Bodenmiller
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer. Nature communications 14 (1) (2023)
Jonas Windhager, Vito Riccardo Tomaso Zanotelli, Daniel Schulz, Lasse Meyer, Michelle Daniel, Bernd Bodenmiller, Nils Eling
An end-to-end workflow for multiplexed image processing and analysis. Nature protocols (2023)
Tsuyoshi Hosogane, Ruben Casanova, Bernd Bodenmiller
DNA-barcoded signal amplification for imaging mass cytometry enables sensitive and highly multiplexed tissue imaging. Nature methods (2023)
Lena Cords, Sandra Tietscher, Tobias Anzeneder, Claus Langwieder, Martin Rees, Natalie de Souza, Bernd Bodenmiller
Cancer-associated fibroblast classification in single-cell and spatial proteomics data. Nature communications 14 (1) (2023)
Sandra Tietscher, Johanna Wagner, Tobias Anzeneder, Claus Langwieder, Martin Rees, Bettina Sobottka, Natalie de Souza, Bernd Bodenmiller
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer. Nature communications 14 (1) (2023)
Sandra Tietscher, Johanna Wagner, Tobias Anzeneder, Claus Langwieder, Martin Rees, Bettina Sobottka, Natalie de Souza, Bernd Bodenmiller
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer. Nature communications 14 (1) (2023)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods 20 (3) (2022)
Jian Wang, Tobias Weiss, Marian Christoph Neidert, Nora C Toussaint, Reza Naghavian, Carla Moreno Sellés, Magdalena Foege, Paula Tomas Ojer, Gioele Medici, Ivan Jelcic, Daniel Schulz, Elisabeth J Rushing, Susanne Dettwiler, Barbara Schrörs, Joo-Heon Shin, Ron McKay, Catherine J Wu, Andreas Lutterotti, Mireia Sospedra, Holger Moch, Erich F Greiner, Bernd Bodenmiller, Luca Regli, Michael Weller, Patrick Roth, Roland Martin
Vaccination with designed neopeptides induces intratumoral, cross-reactive CD4+ T cell responses in glioblastoma. Clinical cancer research : an official journal of the American Association for Cancer Research (2022)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods (2022)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods 20 (3) (2022)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods (2022)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods (2022)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods 20 (3) (2022)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods 20 (3) (2022)
Attila Gabor, Marco Tognetti, Alice Driessen, Jovan Tanevski, Baosen Guo, Wencai Cao, He Shen, Thomas Yu, Verena Chung, null null, Bernd Bodenmiller, Julio Saez-Rodriguez
Cell-to-cell and type-to-type heterogeneity of signaling networks: insights from the crowd. Molecular systems biology 17 (10) (2022)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods 20 (3) (2022)
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation. Nature methods 20 (3) (2022)
Patrick Taeschler, Sarah Adamo, Yun Deng, Carlo Cervia-Hasler, Yves Zurbuchen, Stéphane Chevrier, Miro E Raeber, Sara Hasler, Esther Bächli, Alain Rudiger, Melina Stüssi-Helbling, Lars C Huber, Bernd Bodenmiller, Onur Boyman, Jakob Nilsson
T-cell recovery and evidence of persistent immune activation 12 months after severe COVID-19. Allergy 77 (8) (2022)
Esther Danenberg, Helen Bardwell, Vito R T Zanotelli, Elena Provenzano, Suet-Feung Chin, Oscar M Rueda, Andrew R Green, Emad Rakha, Samuel A J R Aparicio, Ian O Ellis, Bernd Bodenmiller, Carlos Caldas, H Raza Ali
Breast tumor microenvironment structures are associated with genomic features and clinical outcome. Nature genetics 54 (5) (2022)
Tobias Hoch, Daniel Schulz, Nils Eling, Julia Martínez Gómez, Mitchell Paul Levesque, Bernd Bodenmiller
Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy. Science immunology 7 (70) (2022)
Laura Kuett, Raúl Catena, Alaz Özcan, Alex Plüss, null null, Peter Schraml, Holger Moch, Natalie de Souza, Bernd Bodenmiller
Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment. Nature cancer 3 (1) (2021)
Vito Rt Zanotelli, Matthias Leutenegger, Xiao-Kang Lun, Fanny Georgi, Natalie de Souza, Bernd Bodenmiller
A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids. Molecular systems biology 16 (12) (2021)
Sunil Kumar, Xiao-Kang Lun, Bernd Bodenmiller, María Rodríguez Martínez, Heinz Koeppl
Stabilized Reconstruction of Signaling Networks from Single-Cell Cue-Response Data. Scientific reports 10 (1) (2020)
H Raza Ali, Hartland Warren Jackson, Vito R T Zanotelli, Esther Danenberg, Jana R Fischer, Helen Bardwell, Elena Provenzano, null null, Oscar M Rueda, Suet-Feung Chin, Samuel A J R Aparicio, Carlos Caldas, Bernd Bodenmiller
Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer. Nature cancer 1 (2) (2020)
William S Chen, Nevena Zivanovic, David van Dijk, Guy Wolf, Bernd Bodenmiller, Smita Krishnaswamy
Uncovering axes of variation among single-cell cancer specimens. Nature methods 17 (3) (2020)
Maria Anna Rapsomaniki, Xiao-Kang Lun, Stefan Woerner, Marco Laumanns, Bernd Bodenmiller, María Rodríguez Martínez
CellCycleTRACER accounts for cell cycle and volume in mass cytometry data. Nature communications 9 (1) (2018)
Denis Schapiro, Hartland W Jackson, Swetha Raghuraman, Jana R Fischer, Vito R T Zanotelli, Daniel Schulz, Charlotte Giesen, Raúl Catena, Zsuzsanna Varga, Bernd Bodenmiller
histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data. Nature methods 14 (9) (2017)