Smita Krishnaswamy

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 39

Top Venues

Nature communications

The Journal of cell biology

NPJ digital medicine

Genome research

Yale University

University of Michigan (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Yale University Aug 01 2015

United States

Assistant Professor :: Genetics and Computer Science

Education History

University of Michigan Sep 01 2002 - Dec 12 2008

United States

PHD :: Electrical Engineering and Computer Science

Publications

Malte Daniel Luecken, Scott A Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Nikolay S Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael E Vinyard, D S Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Borisovna Botvinnik, Louise Deconinck, Kai Waldrant, null null, Jonathan M Bloom, Angela Oliveira Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Aarthi Venkat, Maximillian J Carlino, Betty R Lawton, Manju L Prasad, Matthew Amodio, Courtney E Gibson, Caroline J Zeiss, Scott E Youlten, Smita Krishnaswamy, Diane S Krause
Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue. Genome research 34 (6) (2024)
Liam Hodgson, Yue Li, Yasser Iturria-Medina, Jo Anne Stratton, Guy Wolf, Smita Krishnaswamy, David A Bennett, Danilo Bzdok
Supervised latent factor modeling isolates cell-type-specific transcriptomic modules that underlie Alzheimer's disease progression. Communications biology 7 (1) (2024)
Aarthi Venkat, Maximillian J Carlino, Betty R Lawton, Manju L Prasad, Matthew Amodio, Courtney E Gibson, Caroline J Zeiss, Scott E Youlten, Smita Krishnaswamy, Diane S Krause
Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue. Genome research (2024)
Ho-Joon Lee, Lee S Schwamm, Lauren H Sansing, Hooman Kamel, Adam de Havenon, Ashby C Turner, Kevin Navin Sheth, Smita Krishnaswamy, Cynthia Brandt, Hongyu Zhao, Harlan M Krumholz, Richa Sharma
StrokeClassifier: ischemic stroke etiology classification by ensemble consensus modeling using electronic health records. NPJ digital medicine 7 (1) (2024)
Malte Daniel Luecken, Scott A Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Nikolay S Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael E Vinyard, D S Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Borisovna Botvinnik, Louise Deconinck, Kai Waldrant, null null, Jonathan M Bloom, Angela Oliveira Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Aarthi Venkat, Maximillian J Carlino, Betty R Lawton, Manju L Prasad, Matthew Amodio, Courtney E Gibson, Caroline J Zeiss, Scott E Youlten, Smita Krishnaswamy, Diane S Krause
Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue. Genome research 34 (6) (2024)
Liam Hodgson, Yue Li, Yasser Iturria-Medina, Jo Anne Stratton, Guy Wolf, Smita Krishnaswamy, David A Bennett, Danilo Bzdok
Supervised latent factor modeling isolates cell-type-specific transcriptomic modules that underlie Alzheimer's disease progression. Communications biology 7 (1) (2024)
Ho-Joon Lee, Lee S Schwamm, Lauren H Sansing, Hooman Kamel, Adam de Havenon, Ashby C Turner, Kevin Navin Sheth, Smita Krishnaswamy, Cynthia Brandt, Hongyu Zhao, Harlan M Krumholz, Richa Sharma
StrokeClassifier: ischemic stroke etiology classification by ensemble consensus modeling using electronic health records. NPJ digital medicine 7 (1) (2024)
Ho-Joon Lee, Lee S Schwamm, Lauren H Sansing, Hooman Kamel, Adam de Havenon, Ashby C Turner, Kevin Navin Sheth, Smita Krishnaswamy, Cynthia Brandt, Hongyu Zhao, Harlan M Krumholz, Richa Sharma
StrokeClassifier: ischemic stroke etiology classification by ensemble consensus modeling using electronic health records. NPJ digital medicine 7 (1) (2024)
Ho-Joon Lee, Lee S Schwamm, Lauren H Sansing, Hooman Kamel, Adam de Havenon, Ashby C Turner, Kevin Navin Sheth, Smita Krishnaswamy, Cynthia Brandt, Hongyu Zhao, Harlan M Krumholz, Richa Sharma
StrokeClassifier: ischemic stroke etiology classification by ensemble consensus modeling using electronic health records. NPJ digital medicine 7 (1) (2024)
Ho-Joon Lee, Lee S Schwamm, Lauren H Sansing, Hooman Kamel, Adam de Havenon, Ashby C Turner, Kevin Navin Sheth, Smita Krishnaswamy, Cynthia Brandt, Hongyu Zhao, Harlan M Krumholz, Richa Sharma
StrokeClassifier: ischemic stroke etiology classification by ensemble consensus modeling using electronic health records. NPJ digital medicine 7 (1) (2024)
Aarthi Venkat, Maximillian J Carlino, Betty R Lawton, Manju L Prasad, Matthew Amodio, Courtney E Gibson, Caroline J Zeiss, Scott E Youlten, Smita Krishnaswamy, Diane S Krause
Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue. Genome research 34 (6) (2024)
Malte Daniel Luecken, Scott A Gigante, Daniel Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael Vinyard, Daniel Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Botvinnik, Louise Deconinck, Kai Waldrant, Bastian Rieck, Constantin Ahlmann-Eltze, Eduardo da Veiga Beltrame, Andrew Benz, Carmen Bravo González-Blas, Ann Chen, Benjamin DeMeo, Can Ergen, Swann Floc'hlay, Adam Gayoso, Stephanie C Hicks, Yuge Ji, Vitalii Kleshchevnikov, Gioele La Manno, Maximilian Lombardo, Romain Lopez, Dario Righelli, Hirak Sarkar, Valentine Svensson, Alexander Tong, Galen Xing, Chenling Xu, Jonathan Bloom, Angela Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Manik Kuchroo, Marcello DiStasio, Eric Song, Eda Calapkulu, Le Zhang, Maryam Ige, Amar H Sheth, Abdelilah Majdoubi, Madhvi Menon, Alexander Tong, Abhinav Godavarthi, Yu Xing, Scott A Gigante, Holly Steach, Jessie Huang, Guillaume Huguet, Janhavi Narain, Kisung You, George Mourgkos, Rahul M Dhodapkar, Matthew J Hirn, Bastian Rieck, Guy Wolf, Smita Krishnaswamy, Brian P Hafler
Single-cell analysis reveals inflammatory interactions driving macular degeneration. Nature communications 14 (1) (2023)
Jessica L Moore, Dhananjay Bhaskar, Feng Gao, Catherine Matte-Martone, Shuangshuang Du, Elizabeth Lathrop, Smirthy Ganesan, Lin Shao, Rachael P Norris, Nil Campamà Sanz, Karl Annusver, Maria Kasper, Andrew Cox, Caroline Hendry, Bastian Rieck, Smita Krishnaswamy, Valentina Greco
Cell cycle controls long-range calcium signaling in the regenerating epidermis. The Journal of cell biology 222 (7) (2023)
Jessica L Moore, Dhananjay Bhaskar, Feng Gao, Catherine Matte-Martone, Shuangshuang Du, Elizabeth Lathrop, Smirthy Ganesan, Lin Shao, Rachael P Norris, Nil Campamà Sanz, Karl Annusver, Maria Kasper, Andrew Cox, Caroline Hendry, Bastian Rieck, Smita Krishnaswamy, Valentina Greco
Cell cycle controls long-range calcium signaling in the regenerating epidermis. The Journal of cell biology 222 (7) (2023)
Jessica L Moore, Dhananjay Bhaskar, Feng Gao, Catherine Matte-Martone, Shuangshuang Du, Elizabeth Lathrop, Smirthy Ganesan, Lin Shao, Rachael P Norris, Nil Campamà Sanz, Karl Annusver, Maria Kasper, Andrew Cox, Caroline Hendry, Bastian Rieck, Smita Krishnaswamy, Valentina Greco
Cell cycle controls long-range calcium signaling in the regenerating epidermis. The Journal of cell biology 222 (7) (2023)
Erica L Busch, Jessie Huang, Andrew Benz, Tom Wallenstein, Guillaume Lajoie, Guy Wolf, Smita Krishnaswamy, Nicholas B Turk-Browne
Multi-view manifold learning of human brain-state trajectories. Nature computational science 3 (3) (2023)
Martina Damo, Noah I Hornick, Aarthi Venkat, Ivana William, Kathryn Clulo, Srividhya Venkatesan, Jiaming He, Eric Fagerberg, Jennifer L Loza, Darwin Kwok, Aya Tal, Jessica Buck, Can Cui, Jaiveer Singh, William E Damsky, Jonathan S Leventhal, Smita Krishnaswamy, Nikhil S Joshi
PD-1 maintains CD8 T cell tolerance towards cutaneous neoantigens. Nature (2023)
Ho-Joon Lee, Lee S Schwamm, Lauren Sansing, Hooman Kamel, Adam de Havenon, Ashby C Turner, Kevin Navin Sheth, Smita Krishnaswamy, Cynthia Brandt, Hongyu Zhao, Harlan M Krumholz, Richa Sharma
StrokeClassifier: Ischemic Stroke Etiology Classification by Ensemble Consensus Modeling Using Electronic Health Records. Research square (2023)
Manik Kuchroo, Marcello DiStasio, Eric Song, Eda Calapkulu, Le Zhang, Maryam Ige, Amar H Sheth, Abdelilah Majdoubi, Madhvi Menon, Alexander Tong, Abhinav Godavarthi, Yu Xing, Scott A Gigante, Holly Steach, Jessie Huang, Guillaume Huguet, Janhavi Narain, Kisung You, George Mourgkos, Rahul M Dhodapkar, Matthew J Hirn, Bastian Rieck, Guy Wolf, Smita Krishnaswamy, Brian P Hafler
Single-cell analysis reveals inflammatory interactions driving macular degeneration. Nature communications 14 (1) (2023)
Jessica L Moore, Dhananjay Bhaskar, Feng Gao, Catherine Matte-Martone, Shuangshuang Du, Elizabeth Lathrop, Smirthy Ganesan, Lin Shao, Rachael P Norris, Nil Campamà Sanz, Karl Annusver, Maria Kasper, Andrew Cox, Caroline Hendry, Bastian Rieck, Smita Krishnaswamy, Valentina Greco
Cell cycle controls long-range calcium signaling in the regenerating epidermis. The Journal of cell biology 222 (7) (2023)
Jessica L Moore, Dhananjay Bhaskar, Feng Gao, Catherine Matte-Martone, Shuangshuang Du, Elizabeth Lathrop, Smirthy Ganesan, Lin Shao, Rachael P Norris, Nil Campamà Sanz, Karl Annusver, Maria Kasper, Andrew Cox, Caroline Hendry, Bastian Rieck, Smita Krishnaswamy, Valentina Greco
Cell cycle controls long-range calcium signaling in the regenerating epidermis. The Journal of cell biology 222 (7) (2023)
Manik Kuchroo, Marcello DiStasio, Eric Song, Eda Calapkulu, Le Zhang, Maryam Ige, Amar H Sheth, Abdelilah Majdoubi, Madhvi Menon, Alexander Tong, Abhinav Godavarthi, Yu Xing, Scott A Gigante, Holly Steach, Jessie Huang, Guillaume Huguet, Janhavi Narain, Kisung You, George Mourgkos, Rahul M Dhodapkar, Matthew J Hirn, Bastian Rieck, Guy Wolf, Smita Krishnaswamy, Brian P Hafler
Single-cell analysis reveals inflammatory interactions driving macular degeneration. Nature communications 14 (1) (2023)
Manik Kuchroo, Marcello DiStasio, Eric Song, Eda Calapkulu, Le Zhang, Maryam Ige, Amar H Sheth, Abdelilah Majdoubi, Madhvi Menon, Alexander Tong, Abhinav Godavarthi, Yu Xing, Scott A Gigante, Holly Steach, Jessie Huang, Guillaume Huguet, Janhavi Narain, Kisung You, George Mourgkos, Rahul M Dhodapkar, Matthew J Hirn, Bastian Rieck, Guy Wolf, Smita Krishnaswamy, Brian P Hafler
Single-cell analysis reveals inflammatory interactions driving macular degeneration. Nature communications 14 (1) (2023)
Manik Kuchroo, Marcello DiStasio, Eric Song, Eda Calapkulu, Le Zhang, Maryam Ige, Amar H Sheth, Abdelilah Majdoubi, Madhvi Menon, Alexander Tong, Abhinav Godavarthi, Yu Xing, Scott A Gigante, Holly Steach, Jessie Huang, Guillaume Huguet, Janhavi Narain, Kisung You, George Mourgkos, Rahul M Dhodapkar, Matthew J Hirn, Bastian Rieck, Guy Wolf, Smita Krishnaswamy, Brian P Hafler
Single-cell analysis reveals inflammatory interactions driving macular degeneration. Nature communications 14 (1) (2023)
Manik Kuchroo, Jessie Huang, Patrick Wong, Jean-Christophe Grenier, Dennis Shung, Alexander Tong, Carolina Lucas, Jonathan Klein, Daniel B Burkhardt, Scott A Gigante, Abhinav Godavarthi, Bastian Rieck, Benjamin Israelow, Michael Simonov, Tianyang Mao, Ji Eun Oh, Julio Silva, Takehiro Takahashi, Camila D Odio, Arnau Casanovas-Massana, John Fournier, null null, Shelli F Farhadian, Charles S Dela Cruz, Albert I Ko, Matthew J Hirn, F Perry Wilson, Julie G Hussin, Guy Wolf, Akiko Iwasak, Smita Krishnaswamy
Multiscale PHATE identifies multimodal signatures of COVID-19. Nature biotechnology 40 (5) (2022)
Emily V Dutrow, Deena Emera, Kristina Yim, Severin Uebbing, Acadia A Kocher, Martina Krenzer, Timothy Nottoli, Daniel B Burkhardt, Smita Krishnaswamy, Angeliki Louvi, James P Noonan
Modeling uniquely human gene regulatory function via targeted humanization of the mouse genome. Nature communications 13 (1) (2022)
Jenna L Pappalardo, Le Zhang, Maggie K Pecsok, Kelly Perlman, Chrysoula Zografou, Khadir Raddassi, Ahmad Abdulaziz Abulaban, Smita Krishnaswamy, Jack P Antel, David van Dijk, David A Hafler
Transcriptomic and clonal characterization of T cells in the human central nervous system. Science immunology 5 (51) (2022)
Kelli A Connolly, Manik Kuchroo, Aarthi Venkat, Achia Khatun, Jiawei Wang, Ivana William, Noah I Hornick, Brittany L Fitzgerald, Martina Damo, Moujtaba Y Kasmani, Can Cui, Eric Fagerberg, Isabel Monroy, Amanda Hutchins, Julie F Cheung, Gena G Foster, Dylan L Mariuzza, Mursal Nader, Hongyu Zhao, Weiguo Cui, Smita Krishnaswamy, Nikhil S Joshi
A reservoir of stem-like CD8+ T cells in the tumor-draining lymph node preserves the ongoing antitumor immune response. Science immunology 6 (64) (2021)
Daniel B Burkhardt, Jay S Stanley, Alexander Tong, Ana Luisa Perdigoto, Scott A Gigante, Kevan C Herold, Guy Wolf, Antonio J Giraldez, David van Dijk, Smita Krishnaswamy
Quantifying the effect of experimental perturbations at single-cell resolution. Nature biotechnology 39 (5) (2021)
Mark W Moyle, Kristopher M Barnes, Manik Kuchroo, Alex Gonopolskiy, Leighton H Duncan, Titas Sengupta, Lin Shao, Min Guo, Anthony Santella, Ryan Christensen, Abhishek Kumar, Yicong Wu, Kevin R Moon, Guy Wolf, Smita Krishnaswamy, Zhirong Bao, Hari Shroff, William A Mohler, Daniel A Colón-Ramos
Structural and developmental principles of neuropil assembly in C. elegans. Nature 591 (7848) (2021)
William S Chen, Nevena Zivanovic, David van Dijk, Guy Wolf, Bernd Bodenmiller, Smita Krishnaswamy
Uncovering axes of variation among single-cell cancer specimens. Nature methods 17 (3) (2020)
Xinyue Chen, Daniel B Burkhardt, Amaleah A Hartman, Xiao Hu, Anna E Eastman, Chao Sun, Xujun Wang, Mei Zhong, Smita Krishnaswamy, Shangqin Guo
Publisher Correction: MLL-AF9 initiates transformation from fast-proliferating myeloid progenitors. Nature communications 11 (1) (2020)
Matthew Amodio, David van Dijk, Krishnan Srinivasan, William S Chen, Hussein Mohsen, Kevin R Moon, Allison Campbell, Yujiao Zhao, Xiaomei Wang, Manjunatha Venkataswamy, Anita Desai, V Ravi, Priti Kumar, Ruth Rebecca Montgomery, Guy Wolf, Smita Krishnaswamy
Exploring single-cell data with deep multitasking neural networks. Nature methods 16 (11) (2019)
Kevin R Moon, David van Dijk, Zheng Wang, Scott A Gigante, Daniel B Burkhardt, William S Chen, Kristina Yim, Antonia van den Elzen, Matthew J Hirn, Ronald R Coifman, Natalia B Ivanova, Guy Wolf, Smita Krishnaswamy
Visualizing structure and transitions in high-dimensional biological data. Nature biotechnology 37 (12) (2019)
Xinyue Chen, Daniel B Burkhardt, Amaleah A Hartman, Xiao Hu, Anna E Eastman, Chao Sun, Xujun Wang, Mei Zhong, Smita Krishnaswamy, Shangqin Guo
MLL-AF9 initiates transformation from fast-proliferating myeloid progenitors. Nature communications 10 (1) (2019)
Hideki Ogura, Paula Preston-Hurlburt, Ana Luisa Perdigoto, Matthew Amodio, Smita Krishnaswamy, Pamela Clark, Hua Yu, Dieter Egli, Alexandra Fouts, Andrea K Steck, Kevan C Herold
Identification and Analysis of Islet Antigen-Specific CD8+ T Cells with T Cell Libraries. Journal of immunology (Baltimore, Md. : 1950) 201 (6) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Smita Krishnaswamy