David van Dijk

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 10

Top Venues

Yale University

University of Amsterdam (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Yale University Sep 01 2019

United States

Assistant Professor :: Internal Medicine, Computer Science

Education History

University of Amsterdam Apr 01 2008 - Sep 11 2013

Netherlands

PHD :: Computer Science

Publications

Julio Silva, Takehiro Takahashi, Jamie Wood, Peiwen Lu, Alexandra Tabachnikova, Jeff R Gehlhausen, Kerrie Greene, Bornali Bhattacharjee, Valter Silva Monteiro, Carolina Lucas, Rahul Madhav Dhodapkar, Laura Tabacof, Mario Peña-Hernandez, Kathy Kamath, Tianyang Mao, Dayna Mccarthy, Ruslan Medzhitov, David van Dijk, Harlan M Krumholz, Leying Guan, David Putrino, Akiko Iwasak
Sex differences in symptomatology and immune profiles of Long COVID. medRxiv : the preprint server for health sciences (2024)
Mingze Dong, Bao Wang, Jessica Wei, Antonio H de O Fonseca, Curtis J Perry, Alexander Frey, Feriel Ouerghi, Ellen F Foxman, Jeffrey J Ishizuka, Rahul M Dhodapkar, David van Dijk
Causal identification of single-cell experimental perturbation effects with CINEMA-OT. Nature methods (2023)
Jonathan Klein, Jamie Wood, Jillian Jaycox, Rahul Madhav Dhodapkar, Peiwen Lu, Jeff R Gehlhausen, Alexandra Tabachnikova, Kerrie Greene, Laura Tabacof, Amyn A Malik, Valter Vinícius Silva Monteiro, Julio Silva, Kathy Kamath, Minlu Zhang, Abhilash Dhal, Isabel M Ott, Gabrielee Valle, Mario Peña-Hernandez, Tianyang Mao, Bornali Bhattacharjee, Takehiro Takahashi, Carolina Lucas, Eric Song, Dayna Mccarthy, Erica Breyman, Jenna Tosto-Mancuso, Yile Dai, Emily Perotti, Koray Akduman, Tiffany J Tzeng, Lan Xu, Anna C Geraghty, Michelle Monje, Inci B Yildirim, John Shon, Ruslan Medzhitov, Denyse Lutchmansingh, Jennifer D Possick, Naftali Kaminski, Saad B Omer, Harlan M Krumholz, Leying Guan, Charles Dela Cruz, David van Dijk, Aaron M Ring, David F Putrino, Akiko Iwasak
Distinguishing features of Long COVID identified through immune profiling. Nature (2023)
Avraham Unterman, Tomokazu S Sumida, Nima Nouri, Xiting Yan, Amy Y Zhao, Victor Gasque, Jonas Christian Schupp, Hiromitsu Asashima, Yunqing Liu, Carlos Cosme, Wenxuan Deng, Ming Chen, Micha Sam Brickman Raredon, Kenneth B Hoehn, Guilin Wang, Zuoheng Wang, Giuseppe DeIuliis, Neal G Ravindra, Ningshan Li, Christopher Castaldi, Patrick Wong, John Fournier, Santos Bermejo, Lokesh Sharma, Arnau Casanovas-Massana, Chantal B F Vogels, Chantal B F Vogels, Nathan D Grubaugh, Anthony Melillo, Hailong Meng, Yan Stein, Maksym Minasyan, Subhasis Mohanty, William E Ruff, Inessa Cohen, Khadir Raddassi, null null, Laura E Niklason, Albert I Ko, Ruth Rebecca Montgomery, Shelli F Farhadian, Akiko Iwasak, Albert C Shaw, David van Dijk, Hongyu Zhao, Steven H Kleinstein, David A Hafler, Naftali Kaminski, Charles Dela Cruz
Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19. Nature communications 13 (1) (2022)
Jenna L Pappalardo, Le Zhang, Maggie K Pecsok, Kelly Perlman, Chrysoula Zografou, Khadir Raddassi, Ahmad Abdulaziz Abulaban, Smita Krishnaswamy, Jack P Antel, David van Dijk, David A Hafler
Transcriptomic and clonal characterization of T cells in the human central nervous system. Science immunology 5 (51) (2022)
Daniel B Burkhardt, Jay S Stanley, Alexander Tong, Ana Luisa Perdigoto, Scott A Gigante, Kevan C Herold, Guy Wolf, Antonio J Giraldez, David van Dijk, Smita Krishnaswamy
Quantifying the effect of experimental perturbations at single-cell resolution. Nature biotechnology 39 (5) (2021)
Neal G Ravindra, Mia Madel Alfajaro, Victor Gasque, Nicholas C Huston, Han Wan, Klara Szigeti-Buck, Yuki Yasumoto, Allison M Greaney, Victoria Habet, Ryan D Chow, Jennifer S Chen, Jin Wei, Renata B Filler, Bao Wang, Guilin Wang, Laura E Niklason, Ruth Rebecca Montgomery, Stephanie C Eisenbarth, Sidi Chen, Adam Williams, Akiko Iwasaki, Tamas L Horvath, Ellen F Foxman, Richard W Pierce, Anna Marie Pyle, David van Dijk, Craig B Wilen
Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes. PLoS biology 19 (3) (2021)
William S Chen, Nevena Zivanovic, David van Dijk, Guy Wolf, Bernd Bodenmiller, Smita Krishnaswamy
Uncovering axes of variation among single-cell cancer specimens. Nature methods 17 (3) (2020)
Kevin R Moon, David van Dijk, Zheng Wang, Scott A Gigante, Daniel B Burkhardt, William S Chen, Kristina Yim, Antonia van den Elzen, Matthew J Hirn, Ronald R Coifman, Natalia B Ivanova, Guy Wolf, Smita Krishnaswamy
Visualizing structure and transitions in high-dimensional biological data. Nature biotechnology 37 (12) (2019)
David van Dijk, Eilon Sharon, Maya Lotan-Pompan, Adina Weinberger, Eran Segal, Lucas B Carey
Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators. Genome research 27 (1) (2016)

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Publication Activity (10 Years)

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David van Dijk