Brian C Searle (Brian Searle)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 25

Top Venues

Journal of proteome research

Research square

Clinical chemistry

bioRxiv : the preprint server for biology

Institute for Systems Biology

University of Washington (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institute for Systems Biology

United States

Translational Research Fellow

Proteome Software

United States

Owner

Education History

University of Washington

United States

PHD :: Genome Sciences

Publications

Brian C Searle, Ariana E Shannon, Rachael Teodorescu, No-Joon Song, Lilian Heil, Cristina Jacob, Philip Remes, Zihai Li, Mark Rubinstein
Rapid assay development for low input targeted proteomics using a versatile linear ion trap. Research square (2024)
Ariana E Shannon, Rachael N Teodorescu, Nojoon Soon, Lilian R Heil, Cristina C Jacob, Philip M Remes, Mark P Rubinstein, Brian C Searle
A workflow for targeted proteomics assay development using a versatile linear ion trap. bioRxiv : the preprint server for biology (2024)
Brian C Searle, Ariana E Shannon, Rachael Teodorescu, No-Joon Song, Lilian Heil, Cristina Jacob, Philip Remes, Zihai Li, Mark Rubinstein
Rapid assay development for low input targeted proteomics using a versatile linear ion trap. Research square (2024)
Brian C Searle, Ariana E Shannon, Rachael Teodorescu, No-Joon Song, Lilian Heil, Cristina Jacob, Philip Remes, Zihai Li, Mark Rubinstein
Rapid assay development for low input targeted proteomics using a versatile linear ion trap. Research square (2024)
Brian C Searle
Nanopore Protein Sequencing Achieves Significant New Milestones. Clinical chemistry (2024)
Brian C Searle
Nanopore Protein Sequencing Achieves Significant New Milestones. Clinical chemistry (2024)
Gautam Ghosh, Ariana E Shannon, Brian C Searle
Data acquisition approaches for single cell proteomics. Proteomics (2024)
Brian C Searle
Nanopore Protein Sequencing Achieves Significant New Milestones. Clinical chemistry 70 (8) (2024)
Brian C Searle, Ariana E Shannon, Damien Beau Wilburn
Scribe: Next Generation Library Searching for DDA Experiments. Journal of proteome research (2023)
Brian C Searle, Ariana E Shannon, Damien Beau Wilburn
Scribe: Next Generation Library Searching for DDA Experiments. Journal of proteome research 22 (2) (2023)
Teeradon Phlairaharn, Zilu Ye, Elena Krismer, Anna-Kathrine Pedersen, Maik Pietzner, Jesper Velgaard Olsen, Erwin M Schoof, Brian C Searle
Optimizing Linear Ion-Trap Data-Independent Acquisition toward Single-Cell Proteomics. Analytical chemistry (2023)
Brian C Searle, Ariana E Shannon, Damien Beau Wilburn
Scribe: Next Generation Library Searching for DDA Experiments. Journal of proteome research 22 (2) (2023)
Damien Beau Wilburn, Ariana E Shannon, Victor Spicer, Alicia L Richards, Darien Yeung, Danielle L Swaney, Oleg V Krokhin, Brian C Searle
Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications. bioRxiv : the preprint server for biology (2023)
Alex W Joyce, Brian C Searle
Computational approaches to identify sites of phosphorylation. Proteomics (2023)
Brian C Searle, Ariana E Shannon, Damien Beau Wilburn
Scribe: Next Generation Library Searching for DDA Experiments. Journal of proteome research 22 (2) (2023)
Joanna M Kirkpatrick, Paul M Stemmer, Brian C Searle, Laura E Herring, LeRoy Martin, Mukul K Midha, Brett S Phinney, Baozhen Shan, Magnus Palmblad, Yan Wang, Pratik D Jagtap, Benjamin A Neely
2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Proteomics Study. Journal of biomolecular techniques : JBT 34 (2) (2023)
Teeradon Phlairaharn, Zilu Ye, Elena Krismer, Anna-Kathrine Pedersen, Maik Pietzner, Jesper Velgaard Olsen, Erwin M Schoof, Brian C Searle
Optimizing linear ion trap data independent acquisition towards single cell proteomics. bioRxiv : the preprint server for biology (2023)
Brian McEllin, Brian C Searle, Lisa DePledge, George Sun, Charles Cobbs, Mohsen Karimi
Detection of Human Papillomavirus Integration in Brain Metastases from Oropharyngeal Tumors by Targeted Sequencing. Viruses 13 (8) (2021)
Damien B Wilburn, Alicia L Richards, Danielle L Swaney, Brian C Searle
CIDer: A Statistical Framework for Interpreting Differences in CID and HCD Fragmentation. Journal of proteome research 20 (4) (2021)
Lindsay K Pino, Brian C Searle, Han-Yin Yang, Andrew N Hoofnagle, William Stafford Noble, Michael J MacCoss
Matrix-Matched Calibration Curves for Assessing Analytical Figures of Merit in Quantitative Proteomics. Journal of proteome research 19 (3) (2020)
Brian C Searle, Kristian E Swearingen, Christopher A Barnes, Tobias K Schmidt, Siegfried Gessulat, Bernhard Kuster, Mathias Wilhelm
Generating high quality libraries for DIA MS with empirically corrected peptide predictions. Nature communications 11 (1) (2020)
Brian C Searle, Robert T Lawrence, Michael J MacCoss, Judit Vill N
Thesaurus: quantifying phosphopeptide positional isomers. Nature methods 16 (8) (2019)
Brian C Searle, Alfred L Yergey
An efficient solution for resolving iTRAQ and TMT channel cross-talk. Journal of mass spectrometry : JMS 55 (8) (2019)
Phillip M Seitzer, Brian C Searle
Incorporating In-Source Fragment Information Improves Metabolite Identification Accuracy in Untargeted LC-MS Data Sets. Journal of proteome research 18 (2) (2018)
Brian C Searle, Rachel M Gittelman, Ohad Manor, Joshua M Akey
Detecting Sources of Transcriptional Heterogeneity in Large-Scale RNA-Seq Data Sets. Genetics 204 (4) (2016)

Brian C Searle.css-eqlu8i{font-size:small;padding-left:4px;} (Brian Searle)

Publication Activity (10 Years)

Top Topics

Top Venues

Brian C Searle (Brian Searle)