Danielle L Swaney (Danielle Swaney)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 57

Top Topics

Dna Methylation

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Rahul K Suryawanshi, Priyadarshini Jaishankar, Galen J Correy, Moira M Rachman, Patrick C O'Leary, Taha Y Taha, Francisco J Zapatero-Belinchón, Maria McCavitt-Malvido, Yagmur Umay Doruk, Maisie G V Stevens, Morgan E Diolati, Manasi P Jogalekar, Alicia L Richards, Mauricio Montano, Julia Rosecrans, Michael A Matthay, Takaya Togo, Ryan L Gonciarz, Saumya Gopalkrishnan, R Jeffrey Neitz, Nevan J Krogan, Danielle L Swaney, Brian K Shoichet, Melanie M Ott, Adam R Renslo, Alan Ashworth, Brian K Shoichet
The Mac1 ADP-ribosylhydrolase is a Therapeutic Target for SARS-CoV-2. bioRxiv : the preprint server for biology (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Lois M Kelly, Justine C Rutter, Kevin H Lin, Frank Ling, Matthieu Duchmann, Emmanuelle Latour, Nadia Arang, Hélène Pasquer, Duong Ho Nhat, Juliette Charles, Shane T Killarney, Hazel Xiaohui Ang, Federica Namor, Cécile Culeux, Berangere Lombard, Damarys Loew, Danielle L Swaney, Nevan J Krogan, Luc Brunel, Élodie Carretero, Pascal Verdié, Muriel Amblard, Sofiane Fodil, Tony Huynh, Marie Sébert, Lionel Ades, Emmanuel Raffoux, Nina Fenouille, Raphaël A Itzykson, Camille Lobry, Lina Benajiba, Antoine Forget, Anthony R Martin, Kris C Wood, Alexandre Puissant
Targeting a lineage-specific PI3Kɣ-Akt signaling module in acute myeloid leukemia using a heterobifunctional degrader molecule. Nature cancer 5 (7) (2024)
Lois M Kelly, Justine C Rutter, Kevin H Lin, Frank Ling, Matthieu Duchmann, Emmanuelle Latour, Nadia Arang, Hélène Pasquer, Duong Ho Nhat, Juliette Charles, Shane T Killarney, Hazel Xiaohui Ang, Federica Namor, Cécile Culeux, Berangere Lombard, Damarys Loew, Danielle L Swaney, Nevan J Krogan, Luc Brunel, Élodie Carretero, Pascal Verdié, Muriel Amblard, Sofiane Fodil, Tony Huynh, Marie Sébert, Lionel Ades, Emmanuel Raffoux, Nina Fenouille, Raphaël A Itzykson, Camille Lobry, Lina Benajiba, Antoine Forget, Anthony R Martin, Kris C Wood, Alexandre Puissant
Targeting a lineage-specific PI3Kɣ-Akt signaling module in acute myeloid leukemia using a heterobifunctional degrader molecule. Nature cancer (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio (2024)
Lois M Kelly, Justine C Rutter, Kevin H Lin, Frank Ling, Matthieu Duchmann, Emmanuelle Latour, Nadia Arang, Hélène Pasquer, Duong Ho Nhat, Juliette Charles, Shane T Killarney, Hazel Xiaohui Ang, Federica Namor, Cécile Culeux, Berangere Lombard, Damarys Loew, Danielle L Swaney, Nevan J Krogan, Luc Brunel, Élodie Carretero, Pascal Verdié, Muriel Amblard, Sofiane Fodil, Tony Huynh, Marie Sébert, Lionel Ades, Emmanuel Raffoux, Nina Fenouille, Raphaël A Itzykson, Camille Lobry, Lina Benajiba, Antoine Forget, Anthony R Martin, Kris C Wood, Alexandre Puissant
Targeting a lineage-specific PI3Kɣ-Akt signaling module in acute myeloid leukemia using a heterobifunctional degrader molecule. Nature cancer (2024)
Rahul K Suryawanshi, Priyadarshini Jaishankar, Galen J Correy, Moira M Rachman, Patrick C O'Leary, Taha Y Taha, Francisco J Zapatero-Belinchón, Maria McCavitt-Malvido, Yagmur Umay Doruk, Maisie G V Stevens, Morgan E Diolati, Manasi P Jogalekar, Alicia L Richards, Mauricio Montano, Julia Rosecrans, Michael A Matthay, Takaya Togo, Ryan L Gonciarz, Saumya Gopalkrishnan, R Jeffrey Neitz, Nevan J Krogan, Danielle L Swaney, Brian K Shoichet, Melanie M Ott, Adam R Renslo, Alan Ashworth, Brian K Shoichet
The Mac1 ADP-ribosylhydrolase is a Therapeutic Target for SARS-CoV-2. bioRxiv : the preprint server for biology (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Lois M Kelly, Justine C Rutter, Kevin H Lin, Frank Ling, Matthieu Duchmann, Emmanuelle Latour, Nadia Arang, Hélène Pasquer, Duong Ho Nhat, Juliette Charles, Shane T Killarney, Hazel Xiaohui Ang, Federica Namor, Cécile Culeux, Berangere Lombard, Damarys Loew, Danielle L Swaney, Nevan J Krogan, Luc Brunel, Élodie Carretero, Pascal Verdié, Muriel Amblard, Sofiane Fodil, Tony Huynh, Marie Sébert, Lionel Ades, Emmanuel Raffoux, Nina Fenouille, Raphaël A Itzykson, Camille Lobry, Lina Benajiba, Antoine Forget, Anthony R Martin, Kris C Wood, Alexandre Puissant
Targeting a lineage-specific PI3Kɣ-Akt signaling module in acute myeloid leukemia using a heterobifunctional degrader molecule. Nature cancer (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Zhi Lin, Kaitlin Schaefer, Irene Lui, Zi Yao, Andrea Fossati, Danielle L Swaney, Ajikarunia Palar, Andrej Sali, James A Wells
Multiscale photocatalytic proximity labeling reveals cell surface neighbors on and between cells. Science (New York, N.Y.) 385 (6706) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Zhi Lin, Kaitlin Schaefer, Irene Lui, Zi Yao, Andrea Fossati, Danielle L Swaney, Ajikarunia Palar, Andrej Sali, James A Wells
Multiscale photocatalytic proximity labeling reveals cell surface neighbors on and between cells. Science (New York, N.Y.) 385 (6706) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Charlotte D Eaton, Lauro Avalos, Siyuan John Liu, Zhenhong Chen, Naomi Zakimi, Tim J Casey-Clyde, Paola Bisignano, Calixto-Hope G Lucas, Erica Stevenson, Abrar Choudhury, Harish N Vasudevan, Stephen T Magill, Jacob S Young, Nevan J Krogan, Javier E Villanueva-Meyer, Danielle L Swaney, David R Raleigh
Merlin S13 phosphorylation regulates meningioma Wnt signaling and magnetic resonance imaging features. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Xuewen Chen, Augustinus G Haribowo, Alan H Baik, Andrea Fossati, Erica Stevenson, Yiwen R Chen, Nabora S Reyes, Tien Peng, Michael A Matthay, Michela Traglia, Alexander R Pico, Daniel F Jarosz, Abigail Buchwalter, Sina Ghaemmaghami, Danielle L Swaney, Isha H Jain
In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response. Science advances 9 (49) (2023)
Gary K L Chan, Samantha Maisel, Yeonjoo C Hwang, Bryan C Pascual, Rebecca R B Wolber, Phuong Vu, Krushna C Patra, Mehdi Bouhaddou, Heidi L Kenerson, Huat C Lim, Donald Long, Raymond S Yeung, Praveen Sethupathy, Danielle L Swaney, Nevan J Krogan, Rigney E Turnham, Kimberly J Riehle, John D Scott, Nabeel Bardeesy, John D Gordan
Oncogenic PKA signaling increases c-MYC protein expression through multiple targetable mechanisms. eLife 12 (2023)
Charlotte Eaton, Lauro Avalos, S John Liu, Tim Casey-Clyde, Paola Bisignano, Calixto-Hope G Lucas, Erica Stevenson, Abrar Choudhury, Harish Vasudevan, Stephen Magill, Nevan Krogan, Javier Villanueva-Meyer, Danielle L Swaney, David R Raleigh
MerlinS13 phosphorylation controls meningioma Wnt signaling and magnetic resonance imaging features. Research square (2023)
Adriana M Steinbach, Varun L Bhadkamkar, David Jimenez-Morales, Erica Stevenson, Gwendolyn M Jang, Nevan J Krogan, Danielle L Swaney, Shaeri Mukherjee
Cross-family small GTPase ubiquitination by the intracellular pathogen Legionella pneumophila . bioRxiv : the preprint server for biology (2023)
Andrea Fossati, Deepto Mozumdar, Claire Kokontis, Melissa Mèndez-Moran, Eliza S Nieweglowska, Adrian Pelin, Yuping Li, Baron Guo, Nevan J Krogan, David A Agard, Joseph Bondy-Denomy, Danielle L Swaney
Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping. Nature communications 14 (1) (2023)
Damien Beau Wilburn, Ariana E Shannon, Victor Spicer, Alicia L Richards, Darien Yeung, Danielle L Swaney, Oleg V Krokhin, Brian C Searle
Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications. bioRxiv : the preprint server for biology (2023)
Gary K L Chan, Samantha Maisel, Yeonjoo C Hwang, Bryan C Pascual, Rebecca R B Wolber, Phuong Vu, Krushna C Patra, Mehdi Bouhaddou, Heidi L Kenerson, Huat C Lim, Donald Long, Raymond S Yeung, Praveen Sethupathy, Danielle L Swaney, Nevan J Krogan, Rigney E Turnham, Kimberly J Riehle, John D Scott, Nabeel Bardeesy, John D Gordan
Oncogenic PKA signaling increases c-MYC protein expression through multiple targetable mechanisms. eLife 12 (2023)
Gary K L Chan, Samantha Maisel, Yeonjoo C Hwang, Bryan C Pascual, Rebecca R B Wolber, Phuong Vu, Krushna C Patra, Mehdi Bouhaddou, Heidi L Kenerson, Huat C Lim, Donald Long, Raymond S Yeung, Praveen Sethupathy, Danielle L Swaney, Nevan J Krogan, Rigney E Turnham, Kimberly J Riehle, John D Scott, Nabeel Bardeesy, John D Gordan
Oncogenic PKA signaling increases c-MYC protein expression through multiple targetable mechanisms. eLife 12 (2023)
Gary K L Chan, Samantha Maisel, Yeonjoo C Hwang, Bryan C Pascual, Rebecca R B Wolber, Phuong Vu, Krushna C Patra, Mehdi Bouhaddou, Heidi L Kenerson, Huat C Lim, Donald Long, Raymond S Yeung, Praveen Sethupathy, Danielle L Swaney, Nevan J Krogan, Rigney E Turnham, Kimberly J Riehle, John D Scott, Nabeel Bardeesy, John D Gordan
Oncogenic PKA signaling increases c-MYC protein expression through multiple targetable mechanisms. eLife 12 (2023)
Kelsey M Haas, Michael J McGregor, Mehdi Bouhaddou, Benjamin J Polacco, Eun-Young Kim, Thong T Nguyen, Billy W Newton, Matthew Urbanowski, Heejin Kim, Michael A P Williams, Veronica V Rezelj, Alexandra Hardy, Andrea Fossati, Erica J Stevenson, Ellie Sukerman, Tiffany Kim, Sudhir Penugonda, Elena Moreno, Hannes Braberg, Yuan Zhou, Giorgi Metreveli, Bhavya Harjai, Tia A Tummino, James E Melnyk, Margaret Soucheray, Jyoti Batra, Lars Pache, Laura Martin-Sancho, Jared Carlson-Stevermer, Alexander S Jureka, Christopher F Basler, Kevan M Shokat, Brian K Shoichet, Leah P Shriver, Jeffrey R Johnson, Megan L Shaw, Sumit K Chanda, Dan M Roden, Tonia C Carter, Leah C Kottyan, Rex L Chisholm, Jennifer Allen Pacheco, Maureen E Smith, Steven J Schrodi, Randy A Albrecht, Marco Vignuzzi, Lorena Zuliani-Alvarez, Danielle L Swaney, Manon Eckhardt, Steven M Wolinsky, Kris M White, Judd F Hultquist, Robyn M Kaake, Adolfo García-Sastre, Nevan J Krogan
Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets. Nature communications 14 (1) (2023)
Zhi Lin, Kaitlin Schaefer, Irene Lui, Zi Yao, Andrea Fossati, Danielle L Swaney, Ajikarunia Palar, Andrej Sali, James A Wells
Multi-scale photocatalytic proximity labeling reveals cell surface neighbors on and between cells. bioRxiv : the preprint server for biology (2023)
Gary K L Chan, Samantha Maisel, Yeonjoo C Hwang, Bryan C Pascual, Rebecca R B Wolber, Phuong Vu, Krushna C Patra, Mehdi Bouhaddou, Heidi L Kenerson, Huat C Lim, Donald Long, Raymond S Yeung, Praveen Sethupathy, Danielle L Swaney, Nevan J Krogan, Rigney E Turnham, Kimberly J Riehle, John D Scott, Nabeel Bardeesy, John D Gordan
Oncogenic PKA signaling increases c-MYC protein expression through multiple targetable mechanisms. eLife 12 (2023)
Patrick C O'Leary, Hua-Dong Chen, Yagmur Umay Doruk, Tess Williamson, Benjamin J Polacco, Andrew S McNeal, Tanushree Shenoy, Nupura Kale, Julia Carnevale, Erica Stevenson, David A Quigley, Jonathan Chou, Felix Y Feng, Danielle L Swaney, Nevan J Krogan, Minkyu Kim, Morgan E Diolati, Alan Ashworth
Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2. Cancer research 82 (21) (2022)
Gregory J Krause, Antonio Diaz, Maryam Jafari, Rabia R Khawaja, Esperanza Agullo-Pascual, Olaya Santiago-Fernández, Alicia L Richards, Kuei-Ho Chen, Phillip Dmitriev, Yan Sun, Stephanie K See, Kotb Abdelmohsen, Krystyna Mazan-Mamczarz, Nevan J Krogan, Myriam Gorospe, Danielle L Swaney, Simone Sidoli, Jose Javier Bravo-Cordero, Martin Edward Kampmann, Ana Maria Cuervo
Reduced endosomal microautophagy activity in aging associates with enhanced exocyst-mediated protein secretion. Aging cell 21 (10) (2022)
Abrar Choudhury, Stephen T Magill, Charlotte D Eaton, Briana C Prager, William C Chen, Martha A Cady, Kyounghee Seo, Calixto-Hope G Lucas, Tim J Casey-Clyde, Harish N Vasudevan, Siyuan John Liu, Javier E Villanueva-Meyer, Tai-Chung Lam, Jenny Kan-Suen Pu, Lai-Fung Li, Gilberto Ka-Kit Leung, Danielle L Swaney, Michael Y Zhang, Jason W Chan, Zhixin Qiu, Michael V Martin, Matthew S Susko, Steve E Braunstein, Nancy Ann Oberheim Bush, Jessica D Schulte, Nicholas Butowski, Penny K Sneed, Mitchel S Berger, Nevan J Krogan, Arie Perry, Joanna J Phillips, David A Solomon, Joseph F Costello, Michael W McDermott, Jeremy N Rich, David R Raleigh
Meningioma DNA methylation groups identify biological drivers and therapeutic vulnerabilities. Nature genetics 54 (5) (2022)
Meghna Gupta, Caleigh M Azumaya, Michelle Moritz, Sergei Pourmal, Amy Diallo, Gregory E Merz, Gwendolyn M Jang, Mehdi Bouhaddou, Andrea Fossati, Axel F Brilot, Devan Diwanji, Evelyn Hernandez, Nadia Herrera, Huong T Kratochvil, Victor L Lam, Fei Li, Yang Li, Henry C Nguyen, Carlos A Nowotny, Tristan W Owens, Jessica K Peters, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber M Smith, Iris D Young, Zanlin Yu, Daniel E Asarnow, Christian B Billesbølle, Melody G Campbell, Jen Chen, Kuei-Ho Chen, Un Seng Chio, Miles Sasha Dickinson, Loan Doan, Mingliang Jin, Sun Kyung Kim, Junrui Li, Grant J Jensen, Edmond M Linossi, Yanxin Liu, Megan Lo, Jocelyne Lopez, Kyle E Lopez, Adamo S Mancino, Frank R Moss, Michael D Paul, Komal Ishwar Pawar, Adrian Pelin, Thomas H Pospiech, Cristina Puchades, Soumya Govinda Remesh, Maliheh Safari, Kaitlin Schaefer, Ming Sun, Mariano C Tabios, Aye C Thwin, Erron W Titus, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Wang, Kaihua Zhang, Sunny Zhang, Jianhua Zhao, Fengbo Zhou, Yuan Zhou, Lorena Zuliani-Alvarez, null null, David A Agard, Yifan Cheng, Brian K Shoichet, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Danielle L Swaney, Nevan J Krogan, Adam Frost, Oren S Rosenberg, Kliment A Verba
CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. bioRxiv : the preprint server for biology (2021)
Tina Perica, Christopher J P Mathy, Jiewei Xu, Gwendolyn Μ Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L Swaney, David G Lambright, Mark J S Kelly, Nevan J Krogan, Tanja Kortemme
Systems-level effects of allosteric perturbations to a model molecular switch. Nature 599 (7883) (2021)
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