Benjamin A Neely

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 36

Top Venues

Journal of proteome research

ACS measurement science au

Journal of biomolecular techniques : JBT

PloS one

National Institute of Standards and Technology

This page only lists publications with an associated author ORCID identifier.

Affiliation History

National Institute of Standards and Technology May 16 2016

United States

Research Chemist :: Biochemical and Exposure Sciences Group, Chemical Sciences Division

Medical University of South Carolina

United States

Staff Scientist :: Department of Pharmacology

Medical University of South Carolina

United States

Post-Doctoral Scholar :: Division of Nephrology, Department of Medicine

Publications

Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M Peters-Clarke, Susan B Egbert, Simion Kreimer, Emma H Doud, Oliver M Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D Hegeman, Martín L Mayta, Anna G Duboff, Nicholas M Riley, Robert L Moritz, Jesse G Meyer
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. ACS measurement science au 4 (4) (2024)
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M Peters-Clarke, Susan B Egbert, Simion Kreimer, Emma H Doud, Oliver M Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D Hegeman, Martín L Mayta, Anna G Duboff, Nicholas M Riley, Robert L Moritz, Jesse G Meyer
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. ACS measurement science au 4 (4) (2024)
Amie M Solosky, Iliana M Claudio, Jessie R Chappel, Kaylie I Kirkwood, Michael G Janech, Alison M Bland, Frances M D Gulland, Benjamin A Neely, Erin S Baker
Proteomic and Lipidomic Plasma Evaluations Reveal Biomarkers for Domoic Acid Toxicosis in California Sea Lions. bioRxiv : the preprint server for biology (2024)
Gautam Ghosh, Benjamin A Neely, Alison M Bland, Emily R Whitmer, Cara L Field, Pádraig J Duignan, Michael G Janech
Identification of Candidate Protein Biomarkers Associated with Domoic Acid Toxicosis in Cerebrospinal Fluid of California Sea Lions ( Zalophus californianus ). Journal of proteome research 23 (7) (2024)
Gautam Ghosh, Benjamin A Neely, Alison M Bland, Emily R Whitmer, Cara L Field, Pádraig J Duignan, Michael G Janech
Identification of Candidate Protein Biomarkers Associated with Domoic Acid Toxicosis in Cerebrospinal Fluid of California Sea Lions ( Zalophus californianus ). Journal of proteome research (2024)
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M Peters-Clarke, Susan B Egbert, Simion Kreimer, Emma H Doud, Oliver M Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D Hegeman, Martín L Mayta, Anna G Duboff, Nicholas M Riley, Robert L Moritz, Jesse G Meyer
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. ACS measurement science au 4 (4) (2024)
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M Peters-Clarke, Susan B Egbert, Simion Kreimer, Emma H Doud, Oliver M Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D Hegeman, Martín L Mayta, Anna G Duboff, Nicholas M Riley, Robert L Moritz, Jesse G Meyer
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. ACS measurement science au 4 (4) (2024)
Gautam Ghosh, Benjamin A Neely, Alison M Bland, Emily R Whitmer, Cara L Field, Pádraig J Duignan, Michael G Janech
Identification of Candidate Protein Biomarkers Associated with Domoic Acid Toxicosis in Cerebrospinal Fluid of California Sea Lions ( Zalophus californianus ). Journal of proteome research 23 (7) (2024)
Gautam Ghosh, Benjamin A Neely, Alison M Bland, Emily R Whitmer, Cara L Field, Pádraig J Duignan, Michael G Janech
Identification of Candidate Protein Biomarkers Associated with Domoic Acid Toxicosis in Cerebrospinal Fluid of California Sea Lions ( Zalophus californianus ). Journal of proteome research 23 (7) (2024)
Benjamin A Neely, Debra L Ellisor, W Clay Davis
Proteomics as a Metrological Tool to Evaluate Genome Annotation Accuracy Following De Novo Genome Assembly: A Case Study Using the Atlantic Bottlenose Dolphin ( Tursiops truncatus ). Genes 14 (9) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Joanna M Kirkpatrick, Paul M Stemmer, Brian C Searle, Laura E Herring, LeRoy Martin, Mukul K Midha, Brett S Phinney, Baozhen Shan, Magnus Palmblad, Yan Wang, Pratik D Jagtap, Benjamin A Neely
2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Proteomics Study. Journal of biomolecular techniques : JBT 34 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Benjamin A Neely, Magnus Palmblad
Machine Learning in Proteomics and Metabolomics. Journal of proteome research 21 (11) (2022)
Cassandra L Pegg, Benjamin L Schulz, Benjamin A Neely, Gregory F Albery, Colin J Carlson
Glycosylation and the global virome. Molecular ecology (2022)
Rob Marissen, Madhushri S Varunjikar, Jeroen F J Laros, Josef D Rasinger, Benjamin A Neely, Magnus Palmblad
compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets. Journal of proteome research (2022)
Benjamin A Neely, Michael G Janech, M Brock Fenton, Nancy B Simmons, Alison M Bland, Daniel J Becker
Surveying the Vampire Bat (Desmodus rotundus) Serum Proteome: A Resource for Identifying Immunological Proteins and Detecting Pathogens. Journal of proteome research 20 (5) (2021)
Benjamin A Neely
Cloudy with a Chance of Peptides: Accessibility, Scalability, and Reproducibility with Cloud-Hosted Environments. Journal of proteome research 20 (4) (2021)
Gregory F Albery, Daniel J Becker, Liam Brierley, Cara E Brook, Rebecca C Christofferson, Lily E Cohen, Tad A Dallas, Evan A Eskew, Anna C Fagre, Maxwell J Farrell, Emma Glennon, Sarah Guth, Maxwell B Joseph, Nardus Mollentze, Benjamin A Neely, Timothée Poisot, Angela L Rasmussen, Sadie J Ryan, Stephanie N Seifert, Anna R Sjodin, Erin M Sorrell, Colin J Carlson
The science of the host-virus network. Nature microbiology 6 (12) (2021)
Benjamin A Neely, Magnus Palmblad
Rewinding the Molecular Clock: Looking at Pioneering Molecular Phylogenetics Experiments in the Light of Proteomics. Journal of proteome research 20 (10) (2021)
Claire R Peart, Christina Williams, Saurabh D Pophaly, Benjamin A Neely, Frances M D Gulland, David J Adams, Bee Ling Ng, William Cheng, Michael E Goebel, Olivier Fedrigo, Bettina Haase, Jacquelyn Mountcastle, Arkarachai Fungtammasan, Giulio Formenti, Joanna Collins, Jonathan M D Wood, Ying Sims, James Torrance, Alan Tracey, Kerstin Howe, Arang Rhie, Joseph I Hoffman, Jeremy Johnson, Erich D Jarvis, Matthew Breen, Jochen B W Wolf
Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution. Molecular ecology resources 21 (7) (2021)
Michelle L Heck, Benjamin A Neely
Proteomics in Non-model Organisms: A New Analytical Frontier. Journal of proteome research 19 (9) (2020)
W Clay Davis, Lisa E Kilpatrick, Debra L Ellisor, Benjamin A Neely
Characterization of a human liver reference material fit for proteomics applications. Scientific data 6 (1) (2019)
Mak A Saito, Erin M Bertrand, Megan E Duffy, David A Gaylord, Noelle A Held, William Judson Hervey, Robert L Hettich, Pratik D Jagtap, Michael G Janech, Danie B Kinkade, Dagmar H Leary, Matthew R McIlvin, Elisha K Moore, Robert M Morris, Benjamin A Neely, Brook L Nunn, Jaclyn K Saunders, Adam I Shepherd, Nicholas I Symmonds, David A Walsh
Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. Journal of proteome research 18 (4) (2019)
Benjamin A Neely, Christopher E Wilkins, Laura A Marlow, Dariya Malyarenko, Yunee Kim, Alexandr Ignatchenko, Heather Sasinowska, Maciek Sasinowski, Julius O Nyalwidhe, Thomas Kislinger, John A Copland, Richard R Drake
Proteotranscriptomic Analysis Reveals Stage Specific Changes in the Molecular Landscape of Clear-Cell Renal Cell Carcinoma. PloS one 11 (4) (2016)

Benjamin A Neely.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Benjamin A Neely