Casey M Bergman

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 32

Top Topics

Gene Expression

Top Venues

bioRxiv : the preprint server for biology

Molecular biology and evolution

G3 (Bethesda, Md.)

Microbiology resource announcements

This page only lists publications with an associated author ORCID identifier.

Publications

J Adam Hannon-Hatfield, Jingxuan Chen, Casey M Bergman, David J Garfinkel
Evolution of a Restriction Factor by Domestication of a Yeast Retrotransposon. Molecular biology and evolution 41 (3) (2024)
J Adam Hannon-Hatfield, Jingxuan Chen, Casey M Bergman, David J Garfinkel
Evolution of a restriction factor by domestication of a yeast retrotransposon. Molecular biology and evolution (2024)
J Adam Hannon-Hatfield, Jingxuan Chen, Casey M Bergman, David J Garfinkel
Evolution of a restriction factor by domestication of a yeast retrotransposon. Molecular biology and evolution (2024)
J Adam Hannon-Hatfield, Jingxuan Chen, Casey M Bergman, David J Garfinkel
Evolution of a Restriction Factor by Domestication of a Yeast Retrotransposon. Molecular biology and evolution 41 (3) (2024)
J Adam Hannon-Hatfield, Jingxuan Chen, Casey M Bergman, David J Garfinkel
Evolution of a restriction factor by domestication of a yeast retrotransposon. Molecular biology and evolution (2024)
J Adam Hannon-Hatfield, Jingxuan Chen, Casey M Bergman, David J Garfinkel
Evolution of a Restriction Factor by Domestication of a Yeast Retrotransposon. Molecular biology and evolution 41 (3) (2024)
J Adam Hannon-Hatfield, Jingxuan Chen, Casey M Bergman, David J Garfinkel
Evolution of a Restriction Factor by Domestication of a Yeast Retrotransposon. Molecular biology and evolution 41 (3) (2024)
Jingxuan Chen, David J Garfinkel, Casey M Bergman
Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in Saccharomyces . bioRxiv : the preprint server for biology (2023)
Jingxuan Chen, David J Garfinkel, Casey M Bergman
Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in Saccharomyces . bioRxiv : the preprint server for biology (2023)
Jingxuan Chen, Preston J Basting, Shunhua Han, David J Garfinkel, Casey M Bergman
Reproducible evaluation of short-read transposable element detectors and species-wide data mining of insertion patterns in yeast. bioRxiv : the preprint server for biology (2023)
Jingxuan Chen, David J Garfinkel, Casey M Bergman
Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in Saccharomyces . bioRxiv : the preprint server for biology (2023)
Jingxuan Chen, David J Garfinkel, Casey M Bergman
Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in Saccharomyces . bioRxiv : the preprint server for biology (2023)
Jingxuan Chen, Preston J Basting, Shunhua Han, David J Garfinkel, Casey M Bergman
Reproducible evaluation of short-read transposable element detectors and species-wide data mining of insertion patterns in yeast. bioRxiv : the preprint server for biology (2023)
Jingxuan Chen, David J Garfinkel, Casey M Bergman
Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in Saccharomyces . bioRxiv : the preprint server for biology (2023)
Jingxuan Chen, Preston J Basting, Shunhua Han, David J Garfinkel, Casey M Bergman
Reproducible evaluation of short-read transposable element detectors and species-wide data mining of insertion patterns in yeast. bioRxiv : the preprint server for biology (2023)
Jingxuan Chen, Preston J Basting, Shunhua Han, David J Garfinkel, Casey M Bergman
Reproducible evaluation of short-read transposable element detectors and species-wide data mining of insertion patterns in yeast. bioRxiv : the preprint server for biology (2023)
Shunhua Han, Guilherme Borges Dias, Preston J Basting, Raghuvir Viswanatha, Norbert Perrimon, Casey M Bergman
Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line. Nucleic acids research (2022)
Jingxuan Chen, David J Garfinkel, Casey M Bergman
Long-Read Genome Assembly of Saccharomyces uvarum Strain CBS 7001. Microbiology resource announcements 11 (1) (2022)
Shunhua Han, Preston J Basting, Guilherme Borges Dias, Arthur Luhur, Andrew C Zelhof, Casey M Bergman
Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture. Genetics 219 (2) (2022)
Shunhua Han, Guilherme Borges Dias, Preston J Basting, Michael G Nelson, Sanjai Patel, Mar Marzo, Casey M Bergman
Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines. Genetics 221 (3) (2022)
Jingxuan Chen, Holly McQueary, David W Hall, Peter Philippsen, David J Garfinkel, Casey M Bergman
Genome Assembly of the Ty1-Less Saccharomyces paradoxus Strain DG1768. Microbiology resource announcements 11 (1) (2022)
Guilherme Borges Dias, Ahmad M Aldossary, Hamadttu A F El-Shafie, Fahad M Alhoshani, Mohamed B Al-Fageeh, Casey M Bergman, Manee M Manee
Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878). Mitochondrial DNA. Part B, Resources 6 (11) (2021)
Guilherme Borges Dias, Musaad A Altammami, Hamadttu A F El-Shafie, Fahad M Alhoshani, Mohamed B Al-Fageeh, Casey M Bergman, Manee M Manee
Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. Scientific reports 11 (1) (2021)
Wioletta Czaja, Douda Bensasson, Hyo Won Ahn, David J Garfinkel, Casey M Bergman
Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination. PLoS genetics 16 (2) (2020)
Matthew Chung, Preston J Basting, Rayanna S Patkus, Alexandra Grote, Ashley N Luck, Elodie Ghedin, Barton E Slatko, Michelle Michalski, Jeremy M Foster, Casey M Bergman, Julie C Dunning Hotopp
A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts. G3 (Bethesda, Md.) 10 (9) (2020)
Jennafer A P Hamlin, Guilherme Borges Dias, Casey M Bergman, Douda Bensasson
Phased Diploid Genome Assemblies for Three Strains of Candida albicans from Oak Trees. G3 (Bethesda, Md.) 9 (11) (2019)
Preston J Basting, Casey M Bergman
Complete Genome Assemblies for Three Variants of the Wolbachia Endosymbiont of Drosophila melanogaster. Microbiology resource announcements 8 (45) (2019)
Casey M Bergman
Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus. Mobile DNA 9 (2018)
Yolande Grobler, Chi Y Yun, David J Kahler, Casey M Bergman, Hangnoh Lee, Brian Oliver, Ruth Lehmann
Whole genome screen reveals a novel relationship between Wolbachia levels and Drosophila host translation. PLoS pathogens 14 (11) (2018)
Michael G Nelson, Raquel S Linheiro, Casey M Bergman
McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data. G3 (Bethesda, Md.) 7 (8) (2017)
Gregory S Barsh, Casey M Bergman, Christopher D Brown, Nadia D Singh, Gregory P Copenhaver
Bringing PLOS Genetics Editors to Preprint Servers. PLoS genetics 12 (12) (2016)
Florence Gutzwiller, Catarina R Carmo, Danny E Miller, Danny W Rice, Irene L G Newton, R Scott Hawley, Luís Teixeira, Casey M Bergman
Dynamics of Wolbachia pipientis Gene Expression Across the Drosophila melanogaster Life Cycle. G3 (Bethesda, Md.) 5 (12) (2015)