Julie C Dunning Hotopp (Julie Dunning Hotopp)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 24

Top Topics

Helicobacter Pylori

Top Venues

Microbiology resource announcements

bioRxiv : the preprint server for biology

Scientific reports

G3 (Bethesda, Md.)

This page only lists publications with an associated author ORCID identifier.

Publications

John S A Mattick, Robin E Bromley, Kaylee J Watson, Ricky S Adkins, Christopher I Holt, Jarrett F Lebov, Benjamin C Sparklin, Tyonna S Tyson, David A Rasko, Julie C Dunning Hotopp
Deciphering Bacterial and Archaeal Transcriptional Dark Matter and Its Architectural Complexity. bioRxiv : the preprint server for biology (2024)
John S A Mattick, Robin E Bromley, Kaylee J Watson, Ricky S Adkins, Christopher I Holt, Jarrett F Lebov, Benjamin C Sparklin, Tyonna S Tyson, David A Rasko, Julie C Dunning Hotopp
Deciphering Bacterial and Archaeal Transcriptional Dark Matter and Its Architectural Complexity. bioRxiv : the preprint server for biology (2024)
John S A Mattick, Robin E Bromley, Kaylee J Watson, Ricky S Adkins, Christopher I Holt, Jarrett F Lebov, Benjamin C Sparklin, Tyonna S Tyson, David A Rasko, Julie C Dunning Hotopp
Deciphering transcript architectural complexity in bacteria and archaea. mBio (2024)
Kaylee J Watson, Robin E Bromley, Benjamin C Sparklin, Mark T Gasser, Tamanash Bhattacharya, Jarrett F Lebov, Tyonna Tyson, Nan Dai, Laura E Teigen, Karen T Graf, Jeremy M Foster, Michelle Michalski, Vincent M Bruno, Amelia R I Lindsey, Ivan R Corrêa, Richard W Hardy, Irene Lg Newton, Julie C Dunning Hotopp
Common analysis of direct RNA sequencinG CUrrently leads to misidentification of m 5 C at GCU motifs. Life science alliance 7 (2) (2023)
Kaylee J Watson, Robin E Bromley, Benjamin C Sparklin, Mark T Gasser, Tamanash Bhattacharya, Jarrett F Lebov, Tyonna Tyson, Laura E Teigen, Karen T Graf, Michelle Michalski, Vincent M Bruno, Amelia R I Lindsey, Richard W Hardy, Irene L G Newton, Julie C Dunning Hotopp
Common Analysis of Direct RNA SequencinG CUrrently Leads to Misidentification of 5-Methylcytosine Modifications at GCU Motifs. bioRxiv : the preprint server for biology (2023)
Kaylee J Watson, Robin E Bromley, Benjamin C Sparklin, Mark T Gasser, Tamanash Bhattacharya, Jarrett F Lebov, Tyonna Tyson, Laura E Teigen, Karen T Graf, Michelle Michalski, Vincent M Bruno, Amelia R I Lindsey, Richard W Hardy, Irene L G Newton, Julie C Dunning Hotopp
Common Analysis of Direct RNA SequencinG CUrrently Leads to Misidentification of 5-Methylcytosine Modifications at GCU Motifs. bioRxiv : the preprint server for biology (2023)
John S A Mattick, Silvia Libro, Robin Bromley, Wanpen Chaicumpa, Matthew Chung, Darren Cook, Mohammad Behram Khan, Nikhil Kumar, Yee-Ling Lau, Shailja Misra-Bhattacharya, Ramakrishna U Rao, Lisa Sadzewicz, Atiporn Saeung, Mohd Shahab, Benjamin C Sparklin, Andrew Steven, Joseph D Turner, Luke J Tallon, Mark J Taylor, Andrew R Moorhead, Michelle Michalski, Jeremy M Foster, Julie C Dunning Hotopp
X-treme loss of sequence diversity linked to neo-X chromosomes in filarial nematodes. PLoS neglected tropical diseases 15 (10) (2021)
Sameh S M Soliman, Clara Baldin, Yiyou Gu, Shakti Singh, Teclegiorgis Gebremariam, Marc Swidergall, Abdullah Alqarihi, Eman G Youssef, Sondus Alkhazraji, Antonis Pikoulas, Christina Perske, Vivek Venkataramani, Abigail L Rich, Vincent M Bruno, Julie C Dunning Hotopp, Nicholas J Mantis, John E Edwards, Scott G Filler, Georgios Chamilos, Ellen S Vitetta, Ashraf S Ibrahim
Mucoricin is a ricin-like toxin that is critical for the pathogenesis of mucormycosis. Nature microbiology 6 (3) (2021)
Matthew Chung, Vincent M Bruno, David A Rasko, Christina A Cuomo, Jose F Muñoz, Jonathan Livny, Amol Carl Shetty, Anup Mahurkar, Julie C Dunning Hotopp
Best practices on the differential expression analysis of multi-species RNA-seq. Genome biology 22 (1) (2021)
Matthew Chung, Ricky S Adkins, John S A Mattick, Katie R Bradwell, Amol C Shetty, Lisa Sadzewicz, Luke J Tallon, Claire M Fraser, David A Rasko, Anup Mahurkar, Julie C Dunning Hotopp
FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses. mSystems 6 (1) (2021)
Matthew Chung, Jain Aluvathingal, Robin E Bromley, Suvarna Nadendla, Fanny F Fombad, Chi A Kien, Narcisse V T Gandjui, Abdel J Njouendou, Manuel Ritter, Lisa Sadzewicz, Luke J Tallon, Samuel Wanji, Achim Hoerauf, Kenneth M Pfarr, Julie C Dunning Hotopp
Complete Mitochondrial Genome Sequence of Mansonella perstans. Microbiology resource announcements 9 (30) (2020)
Julie C Dunning Hotopp, David A Baltrus, Vincent M Bruno, John J Dennehy, Steven R Gill, Julia A Maresca, Jelle Matthijnssens, Irene L G Newton, Catherine Putonti, David A Rasko, Antonis Rokas, Simon Roux, Jason E Stajich, Kenneth M Stedman, Frank J Stewart, J Cameron Thrash
Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements. Microbiology resource announcements 9 (36) (2020)
Jeremy M Foster, Alexandra Grote, John Mattick, Alan Tracey, Yu-Chih Tsai, Matthew Chung, James A Cotton, Tyson A Clark, Adam Geber, Nancy Holroyd, Jonas Korlach, Yichao Li, Silvia Libro, Sara Lustigman, Michelle L Michalski, Michael Paulini, Matthew B Rogers, Laura Teigen, Alan Twaddle, Lonnie R Welch, Matthew Berriman, Julie C Dunning Hotopp, Elodie Ghedin
Sex chromosome evolution in parasitic nematodes of humans. Nature communications 11 (1) (2020)
Jarrett F Lebov, John Mattick, Silvia Libro, Benjamin C Sparklin, Matthew Chung, Robin E Bromley, Suvarna Nadendla, Xuechu Zhao, Sandra Ott, Lisa Sadzewicz, Luke J Tallon, Michelle L Michalski, Jeremy M Foster, Julie C Dunning Hotopp
Complete Genome Sequence of wBp, the Wolbachia Endosymbiont of Brugia pahangi FR3. Microbiology resource announcements 9 (27) (2020)
Matthew Chung, Preston J Basting, Rayanna S Patkus, Alexandra Grote, Ashley N Luck, Elodie Ghedin, Barton E Slatko, Michelle Michalski, Jeremy M Foster, Casey M Bergman, Julie C Dunning Hotopp
A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts. G3 (Bethesda, Md.) 10 (9) (2020)
Alan Tracey, Jeremy M Foster, Michael Paulini, Alexandra Grote, John Mattick, Yu-Chih Tsai, Matthew Chung, James A Cotton, Tyson A Clark, Adam Geber, Nancy Holroyd, Jonas Korlach, Silvia Libro, Sara Lustigman, Michelle L Michalski, Matthew B Rogers, Alan Twaddle, Julie C Dunning Hotopp, Matthew Berriman, Elodie Ghedin
Nearly Complete Genome Sequence of Brugia malayi Strain FR3. Microbiology resource announcements 9 (24) (2020)
John Mattick, Silvia Libro, Benjamin C Sparklin, Matthew Chung, Robin E Bromley, Suvarna Nadendla, Xuechu Zhao, Sandra Ott, Lisa Sadzewicz, Luke J Tallon, Michelle L Michalski, Jeremy M Foster, Julie C Dunning Hotopp
Nearly Complete Genome Sequence of Brugia pahangi FR3. Microbiology resource announcements 9 (27) (2020)
Mark T Gasser, Matthew Chung, Robin E Bromley, Suvarna Nadendla, Julie C Dunning Hotopp
Complete Genome Sequence of wAna, the Wolbachia Endosymbiont of Drosophila ananassae. Microbiology resource announcements 8 (43) (2019)
Matthew Chung, Laura E Teigen, Silvia Libro, Robin E Bromley, Dustin Olley, Nikhil Kumar, Lisa Sadzewicz, Luke J Tallon, Anup Mahurkar, Jeremy M Foster, Michelle L Michalski, Julie C Dunning Hotopp
Drug Repurposing of Bromodomain Inhibitors as Potential Novel Therapeutic Leads for Lymphatic Filariasis Guided by Multispecies Transcriptomics. mSystems 4 (6) (2019)
Matthew Chung, Laura Teigen, Hong Liu, Silvia Libro, Amol Shetty, Nikhil Kumar, Xuechu Zhao, Robin E Bromley, Luke J Tallon, Lisa Sadzewicz, Claire M Fraser, David A Rasko, Scott G Filler, Jeremy M Foster, Michelle L Michalski, Vincent M Bruno, Julie C Dunning Hotopp
Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses. Scientific reports 8 (1) (2018)
Julie C Dunning Hotopp, Lisa Klasson
The Complexities and Nuances of Analyzing the Genome of Drosophila ananassae and Its Wolbachia Endosymbiont. G3 (Bethesda, Md.) 8 (1) (2018)
Julie C Dunning Hotopp
Grafting or pruning in the animal tree: lateral gene transfer and gene loss? BMC genomics 19 (1) (2018)
Anne M Estes, David J Hearn, Sonia Agrawal, Elizabeth A Pierson, Julie C Dunning Hotopp
Comparative genomics of the Erwinia and Enterobacter olive fly endosymbionts. Scientific reports 8 (1) (2018)
Julie C Dunning Hotopp, Barton E Slatko, Jeremy M Foster
Targeted Enrichment and Sequencing of Recent Endosymbiont-Host Lateral Gene Transfers. Scientific reports 7 (1) (2017)