Matthew Chung

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2021
Publications (10 Years): 13

Top Topics

Helicobacter Pylori

Top Venues

Microbiology resource announcements

PLoS neglected tropical diseases

This page only lists publications with an associated author ORCID identifier.

Publications

John S A Mattick, Silvia Libro, Robin Bromley, Wanpen Chaicumpa, Matthew Chung, Darren Cook, Mohammad Behram Khan, Nikhil Kumar, Yee-Ling Lau, Shailja Misra-Bhattacharya, Ramakrishna U Rao, Lisa Sadzewicz, Atiporn Saeung, Mohd Shahab, Benjamin C Sparklin, Andrew Steven, Joseph D Turner, Luke J Tallon, Mark J Taylor, Andrew R Moorhead, Michelle Michalski, Jeremy M Foster, Julie C Dunning Hotopp
X-treme loss of sequence diversity linked to neo-X chromosomes in filarial nematodes. PLoS neglected tropical diseases 15 (10) (2021)
Germain Chevignon, Vincent Foray, Mercedes Maria Pérez-Jiménez, Silvia Libro, Matthew Chung, Jeremy M Foster, Frédéric Landmann
Dual RNAseq analyses at soma and germline levels reveal evolutionary innovations in the elephantiasis-agent Brugia malayi, and adaptation of its Wolbachia endosymbionts. PLoS neglected tropical diseases 15 (1) (2021)
Matthew Chung, Vincent M Bruno, David A Rasko, Christina A Cuomo, Jose F Muñoz, Jonathan Livny, Amol Carl Shetty, Anup Mahurkar, Julie C Dunning Hotopp
Best practices on the differential expression analysis of multi-species RNA-seq. Genome biology 22 (1) (2021)
Matthew Chung, Ricky S Adkins, John S A Mattick, Katie R Bradwell, Amol C Shetty, Lisa Sadzewicz, Luke J Tallon, Claire M Fraser, David A Rasko, Anup Mahurkar, Julie C Dunning Hotopp
FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses. mSystems 6 (1) (2021)
Matthew Chung, Jain Aluvathingal, Robin E Bromley, Suvarna Nadendla, Fanny F Fombad, Chi A Kien, Narcisse V T Gandjui, Abdel J Njouendou, Manuel Ritter, Lisa Sadzewicz, Luke J Tallon, Samuel Wanji, Achim Hoerauf, Kenneth M Pfarr, Julie C Dunning Hotopp
Complete Mitochondrial Genome Sequence of Mansonella perstans. Microbiology resource announcements 9 (30) (2020)
Jeremy M Foster, Alexandra Grote, John Mattick, Alan Tracey, Yu-Chih Tsai, Matthew Chung, James A Cotton, Tyson A Clark, Adam Geber, Nancy Holroyd, Jonas Korlach, Yichao Li, Silvia Libro, Sara Lustigman, Michelle L Michalski, Michael Paulini, Matthew B Rogers, Laura Teigen, Alan Twaddle, Lonnie R Welch, Matthew Berriman, Julie C Dunning Hotopp, Elodie Ghedin
Sex chromosome evolution in parasitic nematodes of humans. Nature communications 11 (1) (2020)
Jarrett F Lebov, John Mattick, Silvia Libro, Benjamin C Sparklin, Matthew Chung, Robin E Bromley, Suvarna Nadendla, Xuechu Zhao, Sandra Ott, Lisa Sadzewicz, Luke J Tallon, Michelle L Michalski, Jeremy M Foster, Julie C Dunning Hotopp
Complete Genome Sequence of wBp, the Wolbachia Endosymbiont of Brugia pahangi FR3. Microbiology resource announcements 9 (27) (2020)
Matthew Chung, Preston J Basting, Rayanna S Patkus, Alexandra Grote, Ashley N Luck, Elodie Ghedin, Barton E Slatko, Michelle Michalski, Jeremy M Foster, Casey M Bergman, Julie C Dunning Hotopp
A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts. G3 (Bethesda, Md.) 10 (9) (2020)
Alan Tracey, Jeremy M Foster, Michael Paulini, Alexandra Grote, John Mattick, Yu-Chih Tsai, Matthew Chung, James A Cotton, Tyson A Clark, Adam Geber, Nancy Holroyd, Jonas Korlach, Silvia Libro, Sara Lustigman, Michelle L Michalski, Matthew B Rogers, Alan Twaddle, Julie C Dunning Hotopp, Matthew Berriman, Elodie Ghedin
Nearly Complete Genome Sequence of Brugia malayi Strain FR3. Microbiology resource announcements 9 (24) (2020)
John Mattick, Silvia Libro, Benjamin C Sparklin, Matthew Chung, Robin E Bromley, Suvarna Nadendla, Xuechu Zhao, Sandra Ott, Lisa Sadzewicz, Luke J Tallon, Michelle L Michalski, Jeremy M Foster, Julie C Dunning Hotopp
Nearly Complete Genome Sequence of Brugia pahangi FR3. Microbiology resource announcements 9 (27) (2020)
Mark T Gasser, Matthew Chung, Robin E Bromley, Suvarna Nadendla, Julie C Dunning Hotopp
Complete Genome Sequence of wAna, the Wolbachia Endosymbiont of Drosophila ananassae. Microbiology resource announcements 8 (43) (2019)
Matthew Chung, Laura E Teigen, Silvia Libro, Robin E Bromley, Dustin Olley, Nikhil Kumar, Lisa Sadzewicz, Luke J Tallon, Anup Mahurkar, Jeremy M Foster, Michelle L Michalski, Julie C Dunning Hotopp
Drug Repurposing of Bromodomain Inhibitors as Potential Novel Therapeutic Leads for Lymphatic Filariasis Guided by Multispecies Transcriptomics. mSystems 4 (6) (2019)
Matthew Chung, Laura Teigen, Hong Liu, Silvia Libro, Amol Shetty, Nikhil Kumar, Xuechu Zhao, Robin E Bromley, Luke J Tallon, Lisa Sadzewicz, Claire M Fraser, David A Rasko, Scott G Filler, Jeremy M Foster, Michelle L Michalski, Vincent M Bruno, Julie C Dunning Hotopp
Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses. Scientific reports 8 (1) (2018)