Ashley Shade

Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 54

Top Venues

Microbiology resource announcements

mSystems

Nature communications

Journal of microbiology & biology education

Michigan State University

University of Wisconsin Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Michigan State University

United States

Assistant Professor :: Microbiology and Molecular Genetics

Education History

University of Wisconsin Madison

United States

PHD :: Microbiology Doctoral Training Program

Susquehanna University

United States

BSC :: Biology

Publications

Samuel E Barnett, Ashley Shade
Seven years of microbial community metagenomes from temperate soils affected by an ongoing coal seam fire. Microbiology resource announcements 13 (6) (2024)
Marco E Mechan Llontop, John Mullet, Ashley Shade
Correction for Mechan-Llontop et al., "Genome-sequenced bacterial collection from sorghum epicuticular wax". Microbiology resource announcements 13 (7) (2024)
Ashley Shade
Announcing the mSystems special collection on microbial dormancy. mSystems (2024)
John L Chodkowski, Ashley Shade
Bioactive exometabolites drive maintenance competition in simple bacterial communities. mSystems 9 (4) (2024)
Keara L Grady, Ashley Shade
Bacterial isolate collection from switchgrass rhizosphere. Microbiology resource announcements 13 (7) (2024)
Natalie S Vandepol, Ashley Shade
Is everything everywhere? A hands-on activity to engage undergraduates with key concepts in quantitative microbial biogeography. Journal of microbiology & biology education 25 (2) (2024)
Samuel E Barnett, Ashley Shade
Arrive and wait: Inactive bacterial taxa contribute to perceived soil microbiome resilience after a multidecadal press disturbance. Ecology letters 27 (3) (2024)
Marco E Mechan Llontop, John Mullet, Ashley Shade
Correction for Mechan-Llontop et al., "Genome-sequenced bacterial collection from sorghum aerial root mucilage". Microbiology resource announcements 13 (7) (2024)
Samuel E Barnett, Ashley Shade
Seven years of microbial community metagenomes from temperate soils affected by an ongoing coal seam fire. Microbiology resource announcements 13 (6) (2024)
Sreejata Bandopadhyay, Xingxing Li, Alan W Bowsher, Robert L Last, Ashley Shade
Disentangling plant- and environment-mediated drivers of active rhizosphere bacterial community dynamics during short-term drought. Nature communications 15 (1) (2024)
Keara L Grady, Ashley Shade
Bacterial isolate collection from switchgrass rhizosphere. Microbiology resource announcements (2024)
John L Chodkowski, Ashley Shade
Bioactive exometabolites drive maintenance competition in simple bacterial communities. mSystems (2024)
John L Chodkowski, Ashley Shade
Bioactive exometabolites drive maintenance competition in simple bacterial communities. mSystems 9 (4) (2024)
Marco E Mechan Llontop, John Mullet, Ashley Shade
Correction for Mechan-Llontop et al., "Genome-sequenced bacterial collection from sorghum epicuticular wax". Microbiology resource announcements 13 (7) (2024)
Sreejata Bandopadhyay, Xingxing Li, Alan W Bowsher, Robert L Last, Ashley Shade
Disentangling plant- and environment-mediated drivers of active rhizosphere bacterial community dynamics during short-term drought. Nature communications 15 (1) (2024)
Marco E Mechan Llontop, John Mullet, Ashley Shade
Correction for Mechan-Llontop et al., "Genome-sequenced bacterial collection from sorghum aerial root mucilage". Microbiology resource announcements (2024)
Natalie S Vandepol, Ashley Shade
Is everything everywhere? A hands-on activity to engage undergraduates with key concepts in quantitative microbial biogeography. Journal of microbiology & biology education 25 (2) (2024)
Keara L Grady, Ashley Shade
Bacterial isolate collection from switchgrass rhizosphere. Microbiology resource announcements 13 (7) (2024)
Natalie S Vandepol, Ashley Shade
Is everything everywhere? A hands-on activity to engage undergraduates with key concepts in quantitative microbial biogeography. Journal of microbiology & biology education (2024)
John L Chodkowski, Ashley Shade
Bioactive exometabolites drive maintenance competition in simple bacterial communities. mSystems 9 (4) (2024)
Natalie S Vandepol, Ashley Shade
Is everything everywhere? A hands-on activity to engage undergraduates with key concepts in quantitative microbial biogeography. Journal of microbiology & biology education 25 (2) (2024)
John L Chodkowski, Ashley Shade
Bioactive exometabolites drive maintenance competition in simple bacterial communities. mSystems 9 (4) (2024)
Keara L Grady, Ashley Shade
Bacterial isolate collection from switchgrass rhizosphere. Microbiology resource announcements 13 (7) (2024)
Samuel E Barnett, Ashley Shade
Seven years of microbial community metagenomes from temperate soils affected by an ongoing coal seam fire. Microbiology resource announcements (2024)
Marco E Mechan Llontop, John Mullet, Ashley Shade
Correction for Mechan-Llontop et al., "Genome-sequenced bacterial collection from sorghum aerial root mucilage". Microbiology resource announcements 13 (7) (2024)
Marco E Mechan Llontop, John Mullet, Ashley Shade
Correction for Mechan-Llontop et al., "Genome-sequenced bacterial collection from sorghum epicuticular wax". Microbiology resource announcements (2024)
Samuel E Barnett, Ashley Shade
Seven years of microbial community metagenomes from temperate soils affected by an ongoing coal seam fire. Microbiology resource announcements 13 (6) (2024)
Adina Howe, Nejc Stopnisek, Shane K Dooley, Fan Yang, Keara L Grady, Ashley Shade
Seasonal activities of the phyllosphere microbiome of perennial crops. Nature communications 14 (1) (2023)
Marco E Mechan Llontop, John Mullet, Ashley Shade
Genome-sequenced bacterial collection from sorghum aerial root mucilage. Microbiology resource announcements (2023)
Adina Howe, Nejc Stopnisek, Shane K Dooley, Fan Yang, Keara L Grady, Ashley Shade
Seasonal activities of the phyllosphere microbiome of perennial crops. Nature communications 14 (1) (2023)
Adina Howe, Nejc Stopnisek, Shane K Dooley, Fan Yang, Keara L Grady, Ashley Shade
Seasonal activities of the phyllosphere microbiome of perennial crops. Nature communications 14 (1) (2023)
Adina Howe, Nejc Stopnisek, Shane K Dooley, Fan Yang, Keara L Grady, Ashley Shade
Seasonal activities of the phyllosphere microbiome of perennial crops. Nature communications 14 (1) (2023)
Ming-Yi Chou, Trine B Andersen, Marco E Mechan Llontop, Nick Beculheimer, Alassane Sow, Nick Moreno, Ashley Shade, Björn R Hamberger, Gregory M Bonito
Terpenes modulate bacterial and fungal growth and sorghum rhizobiome communities. Microbiology spectrum (2023)
Adina Howe, Nejc Stopnisek, Shane K Dooley, Fan Yang, Keara L Grady, Ashley Shade
Seasonal activities of the phyllosphere microbiome of perennial crops. Nature communications 14 (1) (2023)
Marco E Mechan Llontop, John Mullet, Ashley Shade
Genome-sequenced bacterial collection from sorghum epicuticular wax. Microbiology resource announcements (2023)
Adina Howe, Nejc Stopnisek, Shane K Dooley, Fan Yang, Keara L Grady, Ashley Shade
Seasonal activities of the phyllosphere microbiome of perennial crops. Nature communications 14 (1) (2023)
Kathryn C A Milligan-McClellan, José Pablo Dundore-Arias, Jonathan L Klassen, Ashley Shade, Linda L Kinkel, Benjamin E Wolfe
Deciphering the Microbiome: Integrating Theory, New Technologies, and Inclusive Science. mSystems 7 (5) (2022)
Mary Ann Moran, Elizabeth B Kujawinski, William F Schroer, Shady A Amin, Nicholas R Bates, Erin M Bertrand, Rogier Braakman, C Titus Brown, Markus W Covert, Scott C Doney, Sonya T Dyhrman, Arthur S Edison, A Murat Eren, Naomi M Levine, Liang Li, Avena Clara Ross, Mak A Saito, Alyson E Santoro, Daniel Segrè, Ashley Shade, Matthew B Sullivan, Assaf Vardi
Microbial metabolites in the marine carbon cycle. Nature microbiology 7 (4) (2022)
A Fina Bintarti, Patrick J Kearns, Abby Sulesky-Grieb, Ashley Shade
Abiotic Treatment to Common Bean Plants Results in an Altered Endophytic Seed Microbiome. Microbiology spectrum 10 (2) (2022)
Justin P Shaffer, Louis-Felix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight, null null
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. Nature microbiology 7 (12) (2022)
Zoe A Hansen, Wonhee Cha, Brian Nohomovich, Duane W Newton, Paul Lephart, Hossein Salimnia, Walid Khalife, Ashley Shade, James T Rudrik, Shannon D Manning
Comparing gut resistome composition among patients with acute Campylobacter infections and healthy family members. Scientific reports 11 (1) (2021)
Nejc Stopnisek, Ashley Shade
Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype. The ISME journal 15 (9) (2021)
John L Chodkowski, Ashley Shade
Exometabolite Dynamics over Stationary Phase Reveal Strain-Specific Responses. mSystems 5 (6) (2020)
Ashley Shade, Taylor K Dunivin, Jinlyung Choi, Tracy K Teal, Adina C Howe
Strategies for Building Computing Skills To Support Microbiome Analysis: a Five-Year Perspective from the EDAMAME Workshop. mSystems 4 (4) (2019)
Alan W Bowsher, Patrick J Kearns, Ashley Shade
16S rRNA/rRNA Gene Ratios and Cell Activity Staining Reveal Consistent Patterns of Microbial Activity in Plant-Associated Soil. mSystems 4 (2) (2019)
Taylor K Dunivin, Jinlyung Choi, Adina Howe, Ashley Shade
RefSoil+: a Reference Database for Genes and Traits of Soil Plasmids. mSystems 4 (1) (2019)
Keara L Grady, Jackson W Sorensen, Nejc Stopnisek, John Guittar, Ashley Shade
Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops. Nature communications 10 (1) (2019)
Taylor K Dunivin, Susanna Y Yeh, Ashley Shade
A global survey of arsenic-related genes in soil microbiomes. BMC biology 17 (1) (2019)
John Guittar, Ashley Shade, Elena Litchman
Trait-based community assembly and succession of the infant gut microbiome. Nature communications 10 (1) (2019)
Taylor K Dunivin, Justine Miller, Ashley Shade
Taxonomically-linked growth phenotypes during arsenic stress among arsenic resistant bacteria isolated from soils overlying the Centralia coal seam fire. PloS one 13 (1) (2018)
Patrick J Kearns, Ashley Shade
Trait-based patterns of microbial dynamics in dormancy potential and heterotrophic strategy: case studies of resource-based and post-press succession. The ISME journal 12 (11) (2018)
Ashley Shade
Understanding Microbiome Stability in a Changing World. mSystems 3 (2) (2018)
Jackson W Sorensen, Taylor K Dunivin, Tammy C Tobin, Ashley Shade
Ecological selection for small microbial genomes along a temperate-to-thermal soil gradient. Nature microbiology 4 (1) (2018)
John L Chodkowski, Ashley Shade
A Synthetic Community System for Probing Microbial Interactions Driven by Exometabolites. mSystems 2 (6) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ashley Shade