Daniel Weindl

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 12

Top Topics

Convolutional Neural Network

Artificial Intelligence

Electronic Health Record

Top Venues

PLoS computational biology

Nature communications

Nucleic acids research

This page only lists publications with an associated author ORCID identifier.

Publications

Paul F Lang, David R Penas, Julio R Banga, Daniel Weindl, Bela Novak
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells. PLoS computational biology 20 (1) (2024)
Paul F Lang, David R Penas, Julio R Banga, Daniel Weindl, Bela Novak
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells. PLoS computational biology 20 (1) (2024)
Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS computational biology 19 (1) (2023)
Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS computational biology 19 (1) (2023)
Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS computational biology 19 (1) (2023)
Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS computational biology 19 (1) (2023)
Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS computational biology 19 (1) (2023)
Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS computational biology 19 (1) (2023)
Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS computational biology 19 (1) (2023)
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S Andrews, Azraf Anwar, Moritz Emanuel Beber, Frank T Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G Bard Ermentrout, James R Faeder, Andrew P Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H Gennari, Padraig Gleeson, Anne Goelzer, Zachary B Haiman, Jan Hasenauer, Joseph L Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C Ison, Diego Jahn, Henry V Jakubowski, Ryann Jordan, Matúš Kalaš, Matthias König, Wolfram Liebermeister, Rahuman S Malik Sheriff, Synchon Mandal, Robert A McDougal, J Kyle Medley, Pedro Mendes, Robert Müller, Chris John Myers, Aurélien Naldi, Tung V N Nguyen, David P Nickerson, Brett G Olivier, Drashti Patoliya, Loïc Paulevé, Linda R Petzold, Ankita Priya, Anand K Rampadarath, Johann M Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L Snoep, Hugh Sorby, Ryan K Spangler, Jörn Starruß, Payton J Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P Goldberg, James C Schaff, Michael L Blinov, Herbert M Sauro, Ion I Moraru, Jonathan R Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic acids research (2022)
Paul L Stapor, Leonard Schmiester, Christoph Wierling, Simon Merkt, Dilan Pathirana, Bodo M H Lange, Daniel Weindl, Jan Hasenauer
Mini-batch optimization enables training of ODE models on large-scale datasets. Nature communications 13 (1) (2022)
Leonard Schmiester, Yannik Schälte, Frank T Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L Hauber, Svenja Kemmer, Polina Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez, Lukas Refisch, Marcus Rosenblatt, Paul L Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R Banga, Jens Timmer, Alejandro F Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl
PEtab-Interoperable specification of parameter estimation problems in systems biology. PLoS computational biology 17 (1) (2021)