Padraig Gleeson

Loop profile ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 20

Top Venues

Journal of integrative bioinformatics

PLoS computational biology

Philosophical transactions of the Royal Society of London. Series B, Biological sciences

eLife

University College London (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University College London

United Kingdom

PHD

University College Dublin

Ireland

MSC

University College Dublin

Ireland

BSC

Publications

Martin Golebiewski, Gary D Baider, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. Journal of integrative bioinformatics 21 (1) (2024)
Martin Golebiewski, Gary D Baider, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. Journal of integrative bioinformatics (2024)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Justas Birgiolas, Vergil Haynes, Padraig Gleeson, Richard C Gerkin, Suzanne W Dietrich, Sharon M Crook
NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML. PLoS computational biology 19 (3) (2023)
Justas Birgiolas, Vergil Haynes, Padraig Gleeson, Richard C Gerkin, Suzanne W Dietrich, Sharon M Crook
NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML. PLoS computational biology 19 (3) (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Justas Birgiolas, Vergil Haynes, Padraig Gleeson, Richard C Gerkin, Suzanne W Dietrich, Sharon M Crook
NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML. PLoS computational biology 19 (3) (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Justas Birgiolas, Vergil Haynes, Padraig Gleeson, Richard C Gerkin, Suzanne W Dietrich, Sharon M Crook
NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML. PLoS computational biology 19 (3) (2023)
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S Andrews, Azraf Anwar, Moritz Emanuel Beber, Frank T Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G Bard Ermentrout, James R Faeder, Andrew P Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H Gennari, Padraig Gleeson, Anne Goelzer, Zachary B Haiman, Jan Hasenauer, Joseph L Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C Ison, Diego Jahn, Henry V Jakubowski, Ryann Jordan, Matúš Kalaš, Matthias König, Wolfram Liebermeister, Rahuman S Malik Sheriff, Synchon Mandal, Robert A McDougal, J Kyle Medley, Pedro Mendes, Robert Müller, Chris John Myers, Aurélien Naldi, Tung V N Nguyen, David P Nickerson, Brett G Olivier, Drashti Patoliya, Loïc Paulevé, Linda R Petzold, Ankita Priya, Anand K Rampadarath, Johann M Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L Snoep, Hugh Sorby, Ryan K Spangler, Jörn Starruß, Payton J Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P Goldberg, James C Schaff, Michael L Blinov, Herbert M Sauro, Ion I Moraru, Jonathan R Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic acids research (2022)
Dagmar Waltemath, Martin Golebiewski, Michael L Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M Keating, Matthias König, Olga Krebs, Rahuman S Malik Sheriff, David P Nickerson, Ernst Oberortner, Herbert M Sauro, Falk Schreiber, Lucian P Smith, Melanie I Stefan, Ulrike Wittig, Chris John Myers
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). Journal of integrative bioinformatics 17 (2-3) (2020)
Kael Dai, Juan Hernando, Yazan N Billeh, Sergey L Gratiy, Judit Planas, Andrew P Davison, Salvador Dura-Bernal, Padraig Gleeson, Adrien Devresse, Benjamin K Dichter, Michael Gevaert, James G King, Werner A H Van Geit, Arseny V Povolotsky, Eilif B Muller, Jean-Denis Courcol, Anton Arkhipov
The SONATA data format for efficient description of large-scale network models. PLoS computational biology 16 (2) (2020)
Stephen J Eglen, Ben Marwick, Yaroslav O Halchenko, Michael Hanke, Shoaib Sufi, Padraig Gleeson, Robin Angus Silver, Andrew P Davison, Linda J Lanyon, Mathew Birdsall Abrams, Thomas Wachtler, David J Willshaw, Christophe Pouzat, Jean-Baptiste Poline
Toward standard practices for sharing computer code and programs in neuroscience. Nature neuroscience 20 (6) (2019)
Falk Schreiber, Björn Sommer, Gary D Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M Keating, Matthias König, Chris John Myers, David P Nickerson, Dagmar Waltemath
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. Journal of integrative bioinformatics 16 (2) (2019)
Salvador Dura-Bernal, Benjamin A Suter, Padraig Gleeson, Matteo Cantarelli, Adrian Quintana, Facundo Rodriguez, David J Kedziora, George L Chadderdon, Cliff C Kerr, Samuel A Neymotin, Robert A McDougal, Michael Hines, Gordon M G Shepherd, William W Lytton
NetPyNE, a tool for data-driven multiscale modeling of brain circuits. eLife 8 (2019)
Padraig Gleeson, David Lung, Radu Grosu, Ramin Hasani, Stephen D Larson
c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 373 (1758) (2018)
Stephen D Larson, Padraig Gleeson, André E X Brown
Connectome to behaviour: modelling Caenorhabditis elegans at cellular resolution. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 373 (1758) (2018)
Gopal P Sarma, Chee Wai Lee, Tom Portegys, Vahid Ghayoomie, Travis Jacobs, Bradly Alicea, Matteo Cantarelli, Michael Currie, Richard C Gerkin, Shane Gingell, Padraig Gleeson, Richard Gordon, Ramin M Hasani, Giovanni Idili, Sergey Khayrulin, David Lung, Andrey Yu Palyanov, Mark Watts, Stephen D Larson
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 373 (1758) (2018)
Matteo Cantarelli, Bóris Marin, Adrian Quintana, Matt Earnshaw, Robert Court, Padraig Gleeson, Salvador Dura-Bernal, R Angus Silver, Giovanni Idili
Geppetto: a reusable modular open platform for exploring neuroscience data and models. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 373 (1758) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Padraig Gleeson