Henning Hermjakob (H Hermjakob)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 62

Top Venues

Journal of proteome research

Nature genetics

Nucleic acids research

Scientific data

National Center for Protein Science Beijing

Universität Bielefeld (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

National Center for Protein Science Beijing Aug 01 2015

China

Director of Bioinformatics

European Bioinformatics Institute Jan 09 1997

United Kingdom

Team Leader :: Proteomics Services

National Center for Biotechnology Research Dec 01 1996 - Aug 31 1997

Germany

Research Assistant

Education History

Universität Bielefeld Oct 01 1990 - Oct 01 1996

Germany

MSC :: Technische Fakultät

Publications

Karen E Ross, Frederic B Bastian, Matt Buys, Charles E Cook, Peter D'Eustachio, Melissa Harrison, Henning Hermjakob, Donghui Li, Phillip Lord, Darren A Natale, Bjoern Peters, Paul W Sternberg, Andrew I Su, Matthew Thakur, Paul D Thomas, Alex Bateman, null null
Perspectives on tracking data reuse across biodata resources. Bioinformatics advances 4 (1) (2024)
Alexander Grentner, Eliot Ragueneau, Chuqiao Gong, Adrian Prinz, Sabina Gansberger, Inigo Oyarzun, Henning Hermjakob, Johannes Griss
ReactomeGSA: new features to simplify public data reuse. Bioinformatics (Oxford, England) 40 (6) (2024)
Alexander Grentner, Eliot Ragueneau, Chuqiao Gong, Adrian Prinz, Sabina Gansberger, Inigo Oyarzun, Henning Hermjakob, Johannes Griss
ReactomeGSA: new features to simplify public data reuse. Bioinformatics (Oxford, England) 40 (6) (2024)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database : the journal of biological databases and curation 2024 (2024)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database : the journal of biological databases and curation 2024 (2024)
Mauro Silberberg, Henning Hermjakob, Rahuman S Malik Sheriff, Hernán E Grecco
Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems. Bioinformatics (Oxford, England) 40 (8) (2024)
Alexander Grentner, Eliot Ragueneau, Chuqiao Gong, Adrian Prinz, Sabina Gansberger, Inigo Oyarzun, Henning Hermjakob, Johannes Griss
ReactomeGSA: new features to simplify public data reuse. Bioinformatics (Oxford, England) 40 (6) (2024)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database : the journal of biological databases and curation 2024 (2024)
Karen E Ross, Frederic B Bastian, Matt Buys, Charles E Cook, Peter D'Eustachio, Melissa Harrison, Henning Hermjakob, Donghui Li, Phillip Lord, Darren A Natale, Bjoern Peters, Paul W Sternberg, Andrew I Su, Matthew Thakur, Paul D Thomas, Alex Bateman, null null
Perspectives on tracking data reuse across biodata resources. Bioinformatics advances 4 (1) (2024)
Mauro Silberberg, Henning Hermjakob, Rahuman S Malik Sheriff, Hernán E Grecco
Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems. Bioinformatics (Oxford, England) 40 (8) (2024)
Karen E Ross, Frederic B Bastian, Matt Buys, Charles E Cook, Peter D'Eustachio, Melissa Harrison, Henning Hermjakob, Donghui Li, Phillip Lord, Darren A Natale, Bjoern Peters, Paul W Sternberg, Andrew I Su, Matthew Thakur, Paul D Thomas, Alex Bateman, null null
Perspectives on tracking data reuse across biodata resources. Bioinformatics advances 4 (1) (2024)
Mauro Silberberg, Henning Hermjakob, Rahuman S Malik Sheriff, Hernán E Grecco
Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems. Bioinformatics (Oxford, England) 40 (8) (2024)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database : the journal of biological databases and curation 2024 (2024)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Dan Wang, Dong Yang, Liuhui Yang, Lihong Diao, Yuqi Zhang, Yang Li, Hongye Wang, Jing Ren, Linlin Cheng, Qiaoyun Tan, Ran Zhang, Xiaohong Han, Xiaohan Zhang, Bingwei Wang, Dong Li, Meng Chen, Henning Hermjakob, Yongzhe Li, Joshua LaBaer, Zhou Zhou, Xiaobo Yu
Human Autoantigen Atlas: Searching for the Hallmarks of Autoantigens. Journal of proteome research (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Krishna Tiwari, Lisa Matthews, Bruce May, Veronica Shamovsky, Marija Orlic-Milacic, Karen Rothfels, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Nancy Li, Guanming Wu, Lincoln D Stein, Peter D'Eustachio, Henning Hermjakob
ChatGPT usage in the Reactome curation process. bioRxiv : the preprint server for biology (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Luca Stefanucci, Janine H Collins, Matthew Christopher Sims, Iñigo Barrio-Hernandez, Luanluan Sun, Oliver S Burren, Livia Perfetto, Isobel Bender, Tiffany J Callahan, Kathryn Fleming, Jose Antonio Guerrero, Henning Hermjakob, Maria Jesus Martin, James David Stephenson, Kalpana Panneerselvam, Slavé Petrovski, Pablo Porras, Peter Nick Robinson, Quanli Wang, Xavier Watkins, Mattia Frontini, Roman A Laskowski, Pedro Beltrao, Emanuele Di Angelantonio, Keith Gomez, Michael A Laffan, Willem Hendrik Ouwehand, Andrew D Mumford, Kathleen Freson, Keren Jacqueline Carss, Kate Downes, Nicholas S Gleadall, Karyn Megy, Elspeth A Bruford, Dragana Vuckovic
The effects of pathogenic variants for inherited hemostasis disorders in 140,214 UK Biobank participants. Blood (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Panni Simona, Kalpana Panneerselvam, Pablo Porras, Margaret Duesbury, Livia Perfetto, Luana Licata, Henning Hermjakob, Sandra E Orchard
The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study. Database : the journal of biological databases and curation 2023 (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. bioRxiv : the preprint server for biology (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Marija Milacic, Deidre Beavers, Patrick Conley, Chuqiao Gong, Marc Gillespie, Johannes Griss, Robin Haw, Bijay Jassal, Lisa Matthews, Bruce May, Robert Petryszak, Eliot Ragueneau, Karen Rothfels, Cristoffer Sevilla, Veronica Shamovsky, Ralf Stephan, Krishna Tiwari, Thawfeek Varusai, Joel Weiser, Adam Wright, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D'Eustachio
The Reactome Pathway Knowledgebase 2024. Nucleic acids research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S Andrews, Azraf Anwar, Moritz Emanuel Beber, Frank T Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G Bard Ermentrout, James R Faeder, Andrew P Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H Gennari, Padraig Gleeson, Anne Goelzer, Zachary B Haiman, Jan Hasenauer, Joseph L Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C Ison, Diego Jahn, Henry V Jakubowski, Ryann Jordan, Matúš Kalaš, Matthias König, Wolfram Liebermeister, Rahuman S Malik Sheriff, Synchon Mandal, Robert A McDougal, J Kyle Medley, Pedro Mendes, Robert Müller, Chris John Myers, Aurélien Naldi, Tung V N Nguyen, David P Nickerson, Brett G Olivier, Drashti Patoliya, Loïc Paulevé, Linda R Petzold, Ankita Priya, Anand K Rampadarath, Johann M Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L Snoep, Hugh Sorby, Ryan K Spangler, Jörn Starruß, Payton J Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P Goldberg, James C Schaff, Michael L Blinov, Herbert M Sauro, Ion I Moraru, Jonathan R Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic acids research (2022)
Georg Kustatscher, Tom Collins, Anne-Claude Gingras, Tiannan Guo, Henning Hermjakob, Trey Ideker, Kathryn S Lilley, Emma Lundberg, Edward M Marcotte, Markus Ralser, Juri Rappsilber
Understudied proteins: opportunities and challenges for functional proteomics. Nature methods 19 (7) (2022)
Anna Niarakis, Dagmar Waltemath, James Glazier, Falk Schreiber, Sarah M Keating, David Nickerson, Claudine Chaouiya, Anne Siegel, Vincent Noël, Henning Hermjakob, Tomas Helikar, Sylvain Soliman, Laurence Calzone
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology. Briefings in bioinformatics 23 (4) (2022)
Georg Kustatscher, Tom Collins, Anne-Claude Gingras, Tiannan Guo, Henning Hermjakob, Trey Ideker, Kathryn S Lilley, Emma Lundberg, Edward M Marcotte, Markus Ralser, Juri Rappsilber
An open invitation to the Understudied Proteins Initiative. Nature biotechnology 40 (6) (2022)
Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank T Bergmann, Andrew Finney, Colin S Gillespie, Tomas Helikar, Stefan Hoops, Rahuman S Malik Sheriff, Stuart L Moodie, Ion I Moraru, Chris John Myers, Aurélien Naldi, Brett G Olivier, Sven Sahle, James C Schaff, Lucian P Smith, Maciej J Swat, Denis Thieffry, Leandro Watanabe, Darren J Wilkinson, Michael L Blinov, Kimberly Begley, James R Faeder, Harold F Gómez, Thomas M Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson L Lister, Daniel Lucio, Eric Mjolsness, Carole J Proctor, Karthik Raman, Nicolas Rodriguez, Clifford A Shaffer, Bruce E Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier-Schellersheim, Herbert M Sauro, Bernhard O Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, John C Doyle, Michael Hucka, null null
SBML Level 3: an extensible format for the exchange and reuse of biological models. Molecular systems biology 16 (8) (2021)
Noemi Del Toro, Anjali Shrivastava, Eliot Ragueneau, Birgit H M Meldal, Colin Combe, Elisabet Barrera, Livia Perfetto, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu, Bálint Mészáros, Xavier Watkins, Sangya Pundir, Luana Licata, Marta Iannuccelli, Matteo Pellegrini, Maria Jesus Martin, Simona Panni, Margaret Duesbury, Sylvain D Vallet, Juri Rappsilber, Sylvie Ricard-Blum, Gianni Cesareni, Lukasz Salwinski, Sandra E Orchard, Pablo Porras, Kalpana Panneerselvam, Henning Hermjakob
The IntAct database: efficient access to fine-grained molecular interaction data. Nucleic acids research (2021)
Marc Gillespie, Bijay Jassal, Ralf Stephan, Marija Milacic, Karen Rothfels, Andrea Senff-Ribeiro, Johannes Griss, Cristoffer Sevilla, Lisa Matthews, Chuqiao Gong, Chuan Deng, Thawfeek Varusai, Eliot Ragueneau, Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson, Nasim Sanati, Liam Beckman, Xiang Shao, Antonio Fabregat, Konstantinos Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon Shorser, Gary D Baider, Emek Demir, Chris Sander, Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D'Eustachio
The reactome pathway knowledgebase 2022. Nucleic acids research (2021)
Birgit H M Meldal, Livia Perfetto, Colin Combe, Tiago Lubiana, João Vitor Ferreira Cavalcante, Hema Bye-A-Jee, Andra Waagmeester, Noemi Del-Toro, Anjali Shrivastava, Elisabeth Barrera, Edith Wong, Bernhard Mlecnik, Gabriela Bindea, Kalpana Panneerselvam, Egon L Wilighagen, Juri Rappsilber, Pablo Porras, Henning Hermjakob, Sandra E Orchard
Complex Portal 2022: new curation frontiers. Nucleic acids research (2021)
Gaia Cantelli, Alex Bateman, Cath Brooksbank, Anton I Petrov, Rahuman S Malik-Sheriff, Michele Ide-Smith, Henning Hermjakob, Paul Flicek, Rolf Apweiler, Ewan Birney, Johanna McEntyre
The European Bioinformatics Institute (EMBL-EBI) in 2021. Nucleic acids research (2021)
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert D Phair, Aurelio Orta Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce-de-Leon, Akira Funahashi, Yusuke Hiki, Noriko F Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy D Zucker, Kristie L Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan L M Coort, Lars M T Eijssen, Friederike Ehrhart, Devasahayam Arokiar Balaya Rex, Denise N Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Mohamed Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata P Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Dénes Türei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Tomas Helikar, Bhanwar Lal Puniya, Dezső Módos, Agatha Treveil, Márton Ölbei, Bertrand de Meulder, Stephane Ballereau, Aurélien J F Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Wilighagen, Alexander R Pico, Chris T A Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez-Rodriguez, Joaquín Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, null null
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular systems biology 17 (10) (2021)
Tao Chen, Jie Ma, Yi Liu, Zhiguang Chen, Nong Xiao, Yutong Lu, Yinjin Fu, Chunyuan Yang, Mansheng Li, Songfeng Wu, Xue Wang, Dongsheng Li, Fuchu He, Henning Hermjakob, Yunping Zhu
iProX in 2021: connecting proteomics data sharing with big data. Nucleic acids research (2021)
Andra Waagmeester, Gregory Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M Good, Malachi Griffith, Malachi Griffith, Kristina Hanspers, Henning Hermjakob, Toby S Hudson, Kevin Hybiske, Sarah M Keating, Magnus Manske, Michael D Mayers, Daniel Mietchen, Elvira Mitraka, Alexander R Pico, Timothy Putman, Anders Riutta, Núria Queralt-Rosinach, Lynn M Schriml, Thomas M A Shafee, Denise N Slenter, Ralf Stephan, Katherine Thornton, Ginger Tsueng, Roger Tu, Sabah Ul-Hasan, Egon L Wilighagen, Chunlei Wu, Andrew I Su
Wikidata as a knowledge graph for the life sciences. eLife 9 (2020)
Pablo Porras, Elisabet Barrera, Alan Bridge, Noemi Del-Toro, Gianni Cesareni, Margaret Duesbury, Henning Hermjakob, Marta Iannuccelli, Igor Jurisica, Max Kotlyar, Luana Licata, Ruth C Lovering, David John Lynn, Birgit H M Meldal, Bindu Nanduri, Kalpana Paneerselvam, Simona Panni, Chiara Pastrello, Matteo Pellegrini, Livia Perfetto, Negin Rahimzadeh, Prashansa Ratan, Sylvie Ricard-Blum, Lukasz Salwinski, Gautam Shirodkar, Anjalia Shrivastava, Sandra E Orchard
Towards a unified open access dataset of molecular interactions. Nature communications 11 (1) (2020)
Marek Ostaszewski, Alexander Mazein, Marc E Gillespie, Inna Kuperstein, Anna Niarakis, Henning Hermjakob, Alexander R Pico, Egon L Wilighagen, Chris T Evelo, Jan Hasenauer, Falk Schreiber, Andreas Dräger, Emek Demir, Olaf Wolkenhauer, Laura I Furlong, Emmanuel Barillot, Joaquín Dopazo, Aurelio Orta Resendiz, Francesco Messina, Alfonso Valencia, Akira Funahashi, Hiroaki Kitano, Charles Auffray, Rudi Balling, Reinhard Schneider
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific data 7 (1) (2020)
Marek Ostaszewski, Alexander Mazein, Marc E Gillespie, Inna Kuperstein, Anna Niarakis, Henning Hermjakob, Alexander R Pico, Egon L Wilighagen, Chris T Evelo, Jan Hasenauer, Falk Schreiber, Andreas Dräger, Emek Demir, Olaf Wolkenhauer, Laura I Furlong, Emmanuel Barillot, Joaquín Dopazo, Aurelio Orta Resendiz, Francesco Messina, Alfonso Valencia, Akira Funahashi, Hiroaki Kitano, Charles Auffray, Rudi Balling, Reinhard Schneider
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific data 7 (1) (2020)
Dagmar Waltemath, Martin Golebiewski, Michael L Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M Keating, Matthias König, Olga Krebs, Rahuman S Malik Sheriff, David P Nickerson, Ernst Oberortner, Herbert M Sauro, Falk Schreiber, Lucian P Smith, Melanie I Stefan, Ulrike Wittig, Chris John Myers
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). Journal of integrative bioinformatics 17 (2-3) (2020)
Christian Lieven, Moritz Emanuel Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary A King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinglu, Gregory L Medlock, Jonathan M Monk, Jens B Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran Raosaheb Patil, Mark G Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
MEMOTE for standardized genome-scale metabolic model testing. Nature biotechnology 38 (3) (2020)
Thawfeek Mohamed Varusai, Steven Jupe, Cristoffer Sevilla, Lisa Matthews, Marc E Gillespie, Lincoln D Stein, Guanming Wu, Peter D'Eustachio, Emmanouil Metzakopian, Henning Hermjakob
Using Reactome to build an autophagy mechanism knowledgebase. Autophagy 17 (6) (2020)
null null, N Del-Toro, M Duesbury, M Koch, L Perfetto, Anjalia Shrivastava, David Ochoa, O Wagih, Janet Piñero, M Kotlyar, Chiara Pastrello, Pedro Beltrao, L I Furlong, Igor Jurisica, Henning Hermjakob, S Orchard, Pablo Porras
Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set. Nature communications 10 (1) (2019)
null null, N Del-Toro, M Duesbury, M Koch, L Perfetto, Anjalia Shrivastava, David Ochoa, O Wagih, Janet Piñero, M Kotlyar, Chiara Pastrello, Pedro Beltrao, L I Furlong, Igor Jurisica, Henning Hermjakob, S Orchard, Pablo Porras
Publisher Correction: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set. Nature communications 10 (1) (2019)
Yasset Perez Riverol, Andrey Zorin, Gaurhari Dass, Manh-Tu Vu, Pan Xu, Mihai Glont, Juan Antonio Vizcaino, Andrew F Jarnuczak, Robert Petryszak, Peipei Ping, Henning Hermjakob
Quantifying the impact of public omics data. Nature communications 10 (1) (2019)
Martin Fenner, Mercè Crosas, Jeffery S Grethe, David N Kennedy, Henning Hermjakob, Phillippe Rocca-Serra, Gustavo Durand, Robin Berjon, Sebastian Karcher, Maryann Martone, Timothy W Clark
A data citation roadmap for scholarly data repositories. Scientific data 6 (1) (2019)
Elena Sügis, Jerome Dauvillier, Anna Leontjeva, Priit Adler, Valerie Hindie, Thomas Moncion, Vincent Collura, Rachel Daudin, Yann Loe-Mie, Yann Hérault, Jean-Charles Lambert, Henning Hermjakob, Tal Pupko, Jean-Christophe Rain, Ioannis Xenarios, Jaak Vilo, Michel Simonneau, Hedi Peterson
HENA, heterogeneous network-based data set for Alzheimer's disease. Scientific data 6 (1) (2019)
Sarala M Wimalaratne, Nick Juty, John Kunze, Greg Janée, Julie A McMurry, Niall Beard, Rafael Jimenez, Jeffery S Grethe, Henning Hermjakob, Maryann E Martone, Timothy W Clark
Uniform resolution of compact identifiers for biomedical data. Scientific data 5 (2018)
Yasset Perez Riverol, Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Kenneth Haug, Adam J Carroll, J Dylan Spalding, Justin Paschall, Mingxun Wang, Noemi Del-Toro, Tobias Ternent, Peng Zhang, Nicola Buso, Nuno Bandeira, Eric W Deutsch, David S Campbell, Ronald C Beavis, Reza M Salek, Siddhant Tripathi, Robert Petryszak, Maria Keays, Eoin Fahy, Manish Sud, Shankar Subramaniam, Ariana Barbera, Rafael C Jiménez, Alexey I Nesvizhskii, Susanna-Assunta Sansone, Christoph Steinbeck, Rodrigo Lopez, Juan Antonio Vizcaino, Peipei Ping, Henning Hermjakob
Discovering and linking public omics data sets using the Omics Discovery Index. Nature biotechnology 35 (5) (2018)
Edward Lau, Quan Cao, Maggie P Y Lam, Jie Wang, Dominic C M Ng, Brian J Bleakley, Jessica M Lee, David A Liem, Ding Wang, Henning Hermjakob, Peipei Ping
Integrated omics dissection of proteome dynamics during cardiac remodeling. Nature communications 9 (1) (2018)
Antonio Fabregat, Florian Korninger, Guilherme Viteri, Konstantinos Sidiropoulos, Pablo Marin-Garcia, Peipei Ping, Guanming Wu, Lincoln Stein, Peter D'Eustachio, Henning Hermjakob
Reactome graph database: Efficient access to complex pathway data. PLoS computational biology 14 (1) (2018)
J Harry Caufield, Yijiang Zhou, Anders O Garlid, Shaun P Setty, David A Liem, Quan Cao, Jessica M Lee, Sanjana Murali, Sarah Spendlove, Wei Wang, Li Zhang, Yizhou Sun, Alex Bui, Henning Hermjakob, Karol E Watson, Peipei Ping
A reference set of curated biomedical data and metadata from clinical case reports. Scientific data 5 (2018)

Henning Hermjakob.css-eqlu8i{font-size:small;padding-left:4px;} (H Hermjakob)

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Henning Hermjakob (H Hermjakob)