Jan Hasenauer

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 32

Top Venues

Nucleic acids research

Nature communications

Journal of clinical medicine

Vaccines

Rheinische Friedrich-Wilhelms-Universität Bonn

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Rheinische Friedrich-Wilhelms-Universität Bonn Oct 01 2018

Germany

Professor :: Faculty of Mathematics and Natural Sciences

Helmholtz Zentrum München Deutsches Forschungszentrum für Umwelt und Gesundheit

Germany

Independent Group Leader :: Institute of Computational Biology

Helmholtz Zentrum München Deutsches Forschungszentrum für Umwelt und Gesundheit

Germany

Team Leader :: Institute of Computational Biology

Helmholtz Zentrum München Deutsches Forschungszentrum für Umwelt und Gesundheit

Germany

PostDoc :: Institute of Bioinformatics and Systems Biology

Universität Stuttgart

Germany

Research and Teaching Assistant :: Institute of Systems Theory and Automatic Control

Publications

Anna E Kiss, Anuroop V Venkatasubramani, Dilan Pathirana, Silke Krause, Aline Campos Sparr, Jan Hasenauer, Axel Imhof, Marisa Müller, Peter B Becker
Processivity and specificity of histone acetylation by the male-specific lethal complex. Nucleic acids research 52 (9) (2024)
Esayas Kebede Gudina, Kira Elsbernd, Daniel Yilma, Rebecca Kisch, Karina Wallrafen-Sam, Gemeda Abebe, Zeleke Mekonnen, Melkamu Berhane Arefayine, Mulusew Gerbaba, Sultan Suleman, Yoseph Mamo, Raquel Rubio-Acero, Solomon Ali, Ahmed Zeynudin, Simon Merkt, Jan Hasenauer, Temesgen Kabeta Chala, Andreas Wieser, Arne Kroidl
Tailoring COVID-19 Vaccination Strategies in High-Seroprevalence Settings: Insights from Ethiopia. Vaccines 12 (7) (2024)
Simon Merkt, Solomon Ali, Esayas Kebede Gudina, Wondimagegn Adissu Maleko, Addisu Gize, Maximilian Muenchhoff, Alexander Graf, Stefan Krebs, Kira Elsbernd, Rebecca Kisch, Sisay Sirgu Betizazu, Bereket Fantahun, Delayehu Bekele, Raquel Rubio-Acero, Mulatu Gashaw, Eyob Girma Abera, Daniel Yilma, Ahmed Zeynudin, Ivana Paunovic, Michael Hoelscher, Helmut Blum, Jan Hasenauer, Arne Kroidl, Andreas Wieser
Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity. Nature communications 15 (1) (2024)
Esayas Kebede Gudina, Kira Elsbernd, Daniel Yilma, Rebecca Kisch, Karina Wallrafen-Sam, Gemeda Abebe, Zeleke Mekonnen, Melkamu Berhane Arefayine, Mulusew Gerbaba, Sultan Suleman, Yoseph Mamo, Raquel Rubio-Acero, Solomon Ali, Ahmed Zeynudin, Simon Merkt, Jan Hasenauer, Temesgen Kabeta Chala, Andreas Wieser, Arne Kroidl
Tailoring COVID-19 Vaccination Strategies in High-Seroprevalence Settings: Insights from Ethiopia. Vaccines 12 (7) (2024)
Anna E Kiss, Anuroop V Venkatasubramani, Dilan Pathirana, Silke Krause, Aline Campos Sparr, Jan Hasenauer, Axel Imhof, Marisa Müller, Peter B Becker
Processivity and specificity of histone acetylation by the male-specific lethal complex. Nucleic acids research 52 (9) (2024)
Domagoj Dorešić, Stephan Grein, Jan Hasenauer
Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Olga Teplytska, Moritz Ernst, Luca Marie Koltermann, Diego Valderrama, Elena Trunz, Marc Vaisband, Jan Hasenauer, Holger Fröhlich, Ulrich Jaehde
Machine Learning Methods for Precision Dosing in Anticancer Drug Therapy: A Scoping Review. Clinical pharmacokinetics (2024)
Domagoj Dorešić, Stephan Grein, Jan Hasenauer
Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Anna E Kiss, Anuroop V Venkatasubramani, Dilan Pathirana, Silke Krause, Aline Campos Sparr, Jan Hasenauer, Axel Imhof, Marisa Müller, Peter B Becker
Processivity and specificity of histone acetylation by the male-specific lethal complex. Nucleic acids research (2024)
Simon Merkt, Solomon Ali, Esayas Kebede Gudina, Wondimagegn Adissu Maleko, Addisu Gize, Maximilian Muenchhoff, Alexander Graf, Stefan Krebs, Kira Elsbernd, Rebecca Kisch, Sisay Sirgu Betizazu, Bereket Fantahun, Delayehu Bekele, Raquel Rubio-Acero, Mulatu Gashaw, Eyob Girma Abera, Daniel Yilma, Ahmed Zeynudin, Ivana Paunovic, Michael Hoelscher, Helmut Blum, Jan Hasenauer, Arne Kroidl, Andreas Wieser
Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity. Nature communications 15 (1) (2024)
Anna E Kiss, Anuroop V Venkatasubramani, Dilan Pathirana, Silke Krause, Aline Campos Sparr, Jan Hasenauer, Axel Imhof, Marisa Müller, Peter B Becker
Processivity and specificity of histone acetylation by the male-specific lethal complex. Nucleic acids research 52 (9) (2024)
Anna E Kiss, Anuroop V Venkatasubramani, Dilan Pathirana, Silke Krause, Aline Campos Sparr, Jan Hasenauer, Axel Imhof, Marisa Müller, Peter B Becker
Processivity and specificity of histone acetylation by the male-specific lethal complex. Nucleic acids research 52 (9) (2024)
Marlene Saßmannshausen, Leyla Sautbaeva, Leon Alexander von der Emde, Marc Vaisband, Kenneth R Sloan, Jan Hasenauer, Frank G Holz, Thomas Ach
Retro Mode Imaging for Detection and Quantification of Sub-RPE Drusen and Subretinal Drusenoid Deposits in Age-Related Macular Degeneration. Journal of clinical medicine 13 (14) (2024)
Domagoj Dorešić, Stephan Grein, Jan Hasenauer
Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Marlene Saßmannshausen, Leyla Sautbaeva, Leon Alexander von der Emde, Marc Vaisband, Kenneth R Sloan, Jan Hasenauer, Frank G Holz, Thomas Ach
Retro Mode Imaging for Detection and Quantification of Sub-RPE Drusen and Subretinal Drusenoid Deposits in Age-Related Macular Degeneration. Journal of clinical medicine 13 (14) (2024)
Marlene Saßmannshausen, Leyla Sautbaeva, Leon Alexander von der Emde, Marc Vaisband, Kenneth R Sloan, Jan Hasenauer, Frank G Holz, Thomas Ach
Retro Mode Imaging for Detection and Quantification of Sub-RPE Drusen and Subretinal Drusenoid Deposits in Age-Related Macular Degeneration. Journal of clinical medicine 13 (14) (2024)
Esayas Kebede Gudina, Kira Elsbernd, Daniel Yilma, Rebecca Kisch, Karina Wallrafen-Sam, Gemeda Abebe, Zeleke Mekonnen, Melkamu Berhane Arefayine, Mulusew Gerbaba, Sultan Suleman, Yoseph Mamo, Raquel Rubio-Acero, Solomon Ali, Ahmed Zeynudin, Simon Merkt, Jan Hasenauer, Temesgen Kabeta Chala, Andreas Wieser, Arne Kroidl
Tailoring COVID-19 Vaccination Strategies in High-Seroprevalence Settings: Insights from Ethiopia. Vaccines 12 (7) (2024)
Simon Merkt, Solomon Ali, Esayas Kebede Gudina, Wondimagegn Adissu Maleko, Addisu Gize, Maximilian Muenchhoff, Alexander Graf, Stefan Krebs, Kira Elsbernd, Rebecca Kisch, Sisay Sirgu Betizazu, Bereket Fantahun, Delayehu Bekele, Raquel Rubio-Acero, Mulatu Gashaw, Eyob Girma Abera, Daniel Yilma, Ahmed Zeynudin, Ivana Paunovic, Michael Hoelscher, Helmut Blum, Jan Hasenauer, Arne Kroidl, Andreas Wieser
Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity. Nature communications 15 (1) (2024)
Tabea M Eser, Olga Baranov, Manuel Huth, Mohammed I M Ahmed, Flora Deák, Kathrin Held, Luming Lin, Kami Pekayvaz, Alexander Leunig, Leo Nicolai, Georgios Pollakis, Marcus Buggert, David A Price, Raquel Rubio-Acero, Jakob Reich, Philine Falk, Alissa Markgraf, Kerstin Puchinger, Noemi Castelletti, Laura Olbrich, Kanika Vanshylla, Florian Klein, Andreas Wieser, Jan Hasenauer, Inge Kroidl, Michael Hoelscher, Christof Geldmacher
Nucleocapsid-specific T cell responses associate with control of SARS-CoV-2 in the upper airways before seroconversion. Nature communications 14 (1) (2023)
Yannik Schälte, Jan Hasenauer
Informative and adaptive distances and summary statistics in sequential approximate Bayesian computation. PloS one 18 (5) (2023)
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S Andrews, Azraf Anwar, Moritz Emanuel Beber, Frank T Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G Bard Ermentrout, James R Faeder, Andrew P Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H Gennari, Padraig Gleeson, Anne Goelzer, Zachary B Haiman, Jan Hasenauer, Joseph L Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C Ison, Diego Jahn, Henry V Jakubowski, Ryann Jordan, Matúš Kalaš, Matthias König, Wolfram Liebermeister, Rahuman S Malik Sheriff, Synchon Mandal, Robert A McDougal, J Kyle Medley, Pedro Mendes, Robert Müller, Chris John Myers, Aurélien Naldi, Tung V N Nguyen, David P Nickerson, Brett G Olivier, Drashti Patoliya, Loïc Paulevé, Linda R Petzold, Ankita Priya, Anand K Rampadarath, Johann M Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L Snoep, Hugh Sorby, Ryan K Spangler, Jörn Starruß, Payton J Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P Goldberg, James C Schaff, Michael L Blinov, Herbert M Sauro, Ion I Moraru, Jonathan R Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic acids research (2022)
Paul L Stapor, Leonard Schmiester, Christoph Wierling, Simon Merkt, Dilan Pathirana, Bodo M H Lange, Daniel Weindl, Jan Hasenauer
Mini-batch optimization enables training of ODE models on large-scale datasets. Nature communications 13 (1) (2022)
Susanne Pieschner, Jan Hasenauer, Christiane Fuchs
Identifiability analysis for models of the translation kinetics after mRNA transfection. Journal of mathematical biology 84 (7) (2022)
Karina Durso-Cain, Peter Kumberger, Yannik Schälte, Theresa Fink, Harel Dahari, Jan Hasenauer, Susan L Uprichard, Frederik Graw
HCV Spread Kinetics Reveal Varying Contributions of Transmission Modes to Infection Dynamics. Viruses 13 (7) (2021)
Leonard Schmiester, Yannik Schälte, Frank T Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L Hauber, Svenja Kemmer, Polina Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez, Lukas Refisch, Marcus Rosenblatt, Paul L Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R Banga, Jens Timmer, Alejandro F Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl
PEtab-Interoperable specification of parameter estimation problems in systems biology. PLoS computational biology 17 (1) (2021)
Ivonne Haffner, Katrin Schierle, Elba Raimúndez, Birgitta Geier, Dieter Maier, Jan Hasenauer, Birgit Luber, Axel K Walch, Katharina Kolbe, Jorge Riera Knorrenschild, Albrecht Kretzschmar, Beate Rau, Ludwig Fischer von Weikersthal, Miriam Ahlborn, Gabriele Siegler, Stefan Fuxius, Thomas Decker, Christian Wittekind, Florian Lordick
HER2 Expression, Test Deviations, and Their Impact on Survival in Metastatic Gastric Cancer: Results From the Prospective Multicenter VARIANZ Study. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 39 (13) (2021)
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert D Phair, Aurelio Orta Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce-de-Leon, Akira Funahashi, Yusuke Hiki, Noriko F Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy D Zucker, Kristie L Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan L M Coort, Lars M T Eijssen, Friederike Ehrhart, Devasahayam Arokiar Balaya Rex, Denise N Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Mohamed Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata P Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Dénes Türei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Tomas Helikar, Bhanwar Lal Puniya, Dezső Módos, Agatha Treveil, Márton Ölbei, Bertrand de Meulder, Stephane Ballereau, Aurélien J F Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Wilighagen, Alexander R Pico, Chris T A Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez-Rodriguez, Joaquín Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, null null
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular systems biology 17 (10) (2021)
Elba Raimúndez, Simone Keller, Gwen Zwingenberger, Karolin Ebert, Sabine Hug, Fabian Joachim Theis, Dieter Maier, Birgit Luber, Jan Hasenauer
Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines. PLoS computational biology 16 (3) (2020)
Leonard Schmiester, Daniel Weindl, Jan Hasenauer
Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach. Journal of mathematical biology 81 (2) (2020)
Fabian Fröhlich, Anita Reiser, Laura Fink, Daniel Woschée, Thomas Ligon, Fabian Joachim Theis, Joachim Oskar Rädler, Jan Hasenauer
Erratum: Publisher Correction: Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection. NPJ systems biology and applications 5 (2019)
David S Fischer, Anna K Fiedler, Eric M Kernfeld, Ryan M J Genga, Aimée Bastidas-Ponce, Mostafa Bakhti, Heiko Lickert, Jan Hasenauer, René Maehr, Fabian Joachim Theis
Inferring population dynamics from single-cell RNA-sequencing time series data. Nature biotechnology 37 (4) (2019)
Fabian Fröhlich, Anita Reiser, Laura Fink, Daniel Woschée, Thomas Ligon, Fabian Joachim Theis, Joachim Oskar Rädler, Jan Hasenauer
Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection. NPJ systems biology and applications 5 (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jan Hasenauer