Matthias König (Joseph Hellerstein)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 24

Top Venues

Journal of integrative bioinformatics

Nature biotechnology

PLoS computational biology

eLife

Humboldt-Universität zu Berlin

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Humboldt-Universität zu Berlin Jan 01 2016

Germany

Junior Group Leader :: Institute for Theoretical Biology

Charité Universitätsmedizin Berlin Jan 01 2012 - Dec 31 2015

Germany

PhD :: Institute of Biochemistry, Computational Systems Biochemistry

Publications

Lucian P Smith, Frank T Bergmann, Alan Garny, Tomas Helikar, Jonathan R Karr, David P Nickerson, Herbert M Sauro, Dagmar Waltemath, Matthias König
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5. Journal of integrative bioinformatics (2024)
Lucian P Smith, Frank T Bergmann, Alan Garny, Tomas Helikar, Jonathan R Karr, David P Nickerson, Herbert M Sauro, Dagmar Waltemath, Matthias König
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5. Journal of integrative bioinformatics 21 (1) (2024)
Martin Golebiewski, Gary D Baider, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. Journal of integrative bioinformatics 21 (1) (2024)
Martin Golebiewski, Gary D Baider, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. Journal of integrative bioinformatics (2024)
Deepa Maheshvare M, Soumyendu Raha, Matthias König, Debnath Pal
A Consensus Model of Glucose-Stimulated Insulin Secretion in the Pancreatic β -Cell. bioRxiv : the preprint server for biology (2023)
Friederike E Kohrs, Susann Auer, Alexandra Bannach-Brown, Susann Fiedler, Tamarinde Laura Haven, Verena Heise, Constance Holman, Flávio Azevedo, René Bernard, Armin Bleier, Nicole Bössel, Brian Patrick Cahill, Leyla Jael Castro, Adrian Ehrenhofer, Kristina Eichel, Maximillian Frank, Claudia Frick, Malte Friese, Anne Gärtner, Kerstin Gierend, David Joachim Grüning, Lena Hahn, Maren Hülsemann, Malika Ihle, Sabrina Illius, Laura Maria König, Matthias König, Louisa Kulke, Anton Kutlin, Fritjof Lammers, David Marc Anton Mehler, Christoph Miehl, Anett Müller-Alcazar, Claudia Neuendorf, Helen Niemeyer, Florian Pargent, Aaron Peikert, Christina U Pfeuffer, Robert Reinecke, Jan Philipp Röer, Jessica Lee Rohmann, Alfredo Sánchez-Tójar, Stefan Scherbaum, Elena Sixtus, Lisa Spitzer, Vera Maren Straßburger, Marcel Weber, Clarissa J Whitmire, Josephine Zerna, Dilara Zorbek, Philipp Zumstein, Tracey L Weissberger
Eleven strategies for making reproducible research and open science training the norm at research institutions. eLife 12 (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S Andrews, Azraf Anwar, Moritz Emanuel Beber, Frank T Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G Bard Ermentrout, James R Faeder, Andrew P Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H Gennari, Padraig Gleeson, Anne Goelzer, Zachary B Haiman, Jan Hasenauer, Joseph L Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C Ison, Diego Jahn, Henry V Jakubowski, Ryann Jordan, Matúš Kalaš, Matthias König, Wolfram Liebermeister, Rahuman S Malik Sheriff, Synchon Mandal, Robert A McDougal, J Kyle Medley, Pedro Mendes, Robert Müller, Chris John Myers, Aurélien Naldi, Tung V N Nguyen, David P Nickerson, Brett G Olivier, Drashti Patoliya, Loïc Paulevé, Linda R Petzold, Ankita Priya, Anand K Rampadarath, Johann M Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L Snoep, Hugh Sorby, Ryan K Spangler, Jörn Starruß, Payton J Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P Goldberg, James C Schaff, Michael L Blinov, Herbert M Sauro, Ion I Moraru, Jonathan R Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic acids research (2022)
Lucian P Smith, Frank T Bergmann, Alan Garny, Tomáš Helikar, Jonathan Karr, David P Nickerson, Herbert Sauro, Dagmar Waltemath, Matthias König
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4. Journal of integrative bioinformatics 18 (3) (2021)
Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank T Bergmann, Andrew Finney, Colin S Gillespie, Tomas Helikar, Stefan Hoops, Rahuman S Malik Sheriff, Stuart L Moodie, Ion I Moraru, Chris John Myers, Aurélien Naldi, Brett G Olivier, Sven Sahle, James C Schaff, Lucian P Smith, Maciej J Swat, Denis Thieffry, Leandro Watanabe, Darren J Wilkinson, Michael L Blinov, Kimberly Begley, James R Faeder, Harold F Gómez, Thomas M Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson L Lister, Daniel Lucio, Eric Mjolsness, Carole J Proctor, Karthik Raman, Nicolas Rodriguez, Clifford A Shaffer, Bruce E Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier-Schellersheim, Herbert M Sauro, Bernhard O Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, John C Doyle, Michael Hucka, null null
SBML Level 3: an extensible format for the exchange and reuse of biological models. Molecular systems biology 16 (8) (2021)
Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath
Specifications of standards in systems and synthetic biology: status and developments in 2021. Journal of integrative bioinformatics 18 (3) (2021)
John H Gennari, Matthias König, Goksel Misirli, Maxwell L Neal, David P Nickerson, Dagmar Waltemath
OMEX metadata specification (version 1.2). Journal of integrative bioinformatics 18 (3) (2021)
Dagmar Waltemath, Martin Golebiewski, Michael L Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M Keating, Matthias König, Olga Krebs, Rahuman S Malik Sheriff, David P Nickerson, Ernst Oberortner, Herbert M Sauro, Falk Schreiber, Lucian P Smith, Melanie I Stefan, Ulrike Wittig, Chris John Myers
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). Journal of integrative bioinformatics 17 (2-3) (2020)
Lucian P Smith, Stuart L Moodie, Frank T Bergmann, Colin S Gillespie, Sarah M Keating, Matthias König, Chris John Myers, Maciek J Swat, Darren J Wilkinson, Michael Hucka
Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1. Journal of integrative bioinformatics 17 (2-3) (2020)
Christian Lieven, Moritz Emanuel Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary A King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinglu, Gregory L Medlock, Jonathan M Monk, Jens B Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran Raosaheb Patil, Mark G Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
MEMOTE for standardized genome-scale metabolic model testing. Nature biotechnology 38 (3) (2020)
Maxwell L Neal, John H Gennari, Dagmar Waltemath, David P Nickerson, Matthias König
Open modeling and exchange (OMEX) metadata specification version 1.0. Journal of integrative bioinformatics 17 (2-3) (2020)
Michael Hucka, Frank T Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M Keating, Matthias König, Nicolas Le Novère, Chris John Myers, Brett G Olivier, Sven Sahle, James C Schaff, Rahuman S Malik Sheriff, Lucian P Smith, Dagmar Waltemath, Darren J Wilkinson, Fengkai Zhang
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. Journal of integrative bioinformatics 16 (2) (2019)
Falk Schreiber, Björn Sommer, Gary D Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M Keating, Matthias König, Chris John Myers, David P Nickerson, Dagmar Waltemath
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. Journal of integrative bioinformatics 16 (2) (2019)
J Kyle Medley, Kiri Choi, Matthias König, Lucian Smith, Stanley Gu, Matthias König, Stuart C Sealfon, Herbert M Sauro
Tellurium notebooks-An environment for reproducible dynamical modeling in systems biology. PLoS computational biology 14 (6) (2018)
Nikolaus Berndt, Sascha Bulik, Iwona Wallach, Tilo Wünsch, Matthias König, Martin Stockmann, David Meierhofer, Hermann-Georg Holzhütter
HEPATOKIN1 is a biochemistry-based model of liver metabolism for applications in medicine and pharmacology. Nature communications 9 (1) (2018)
Frank T Bergmann, Jonathan Cooper, Matthias König, Ion Moraru, David P Nickerson, Nicolas Le Novère, Brett G Olivier, Sven Sahle, Lucian P Smith, Dagmar Waltemath
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). Journal of integrative bioinformatics 15 (1) (2018)

Matthias König.css-eqlu8i{font-size:small;padding-left:4px;} (Joseph Hellerstein)

Publication Activity (10 Years)

Top Topics

Top Venues

Matthias König (Joseph Hellerstein)