Elizabeth Purdom

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 16

Top Venues

Science immunology

Nature communications

PLoS computational biology

bioRxiv : the preprint server for biology

UC Berkeley

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

UC Berkeley

United States

Associate Professor :: Statistics

Education History

Stanford University

United States

PHD :: Statistics

Yale University

United States

BSC

Publications

David Wu, Ashley A Hailer, Sijia Wang, Michelle Yuan, Jamie Chan, Abdallah Kurdi, David Han, Hira Ali, H Blaize D'Angio, Aaron T Mayer, Maha Rahim, Ayano Kondo, Daniel Klufas, Esther Kim, A Hunter Shain, Jaehyuk Choi, Tina Bhutani, Gregory Simpson, Roy C Grekin, Roberto R Ricardo-Gonzalez, Elizabeth Purdom, Jeffrey P North, Jeffrey B Cheng, Raymond J Cho
A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical response. Science immunology 9 (91) (2024)
David Wu, Ashley A Hailer, Sijia Wang, Michelle Yuan, Jamie Chan, Abdallah Kurdi, Maha Rahim, Ayano Kondo, David Han, Hira Ali, H Blaize D'Angio, Aaron T Mayer, Daniel Klufas, Esther Kim, A Hunter Shain, Jaehyuk Choi, Tina Bhutani, Gregory Simpson, Roy C Grekin, Roberto R Ricardo-Gonzalez, Elizabeth Purdom, Jeffrey P North, Jeffrey B Cheng, Raymond J Cho
A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical response. Science immunology 9 (91) (2024)
David Wu, Ashley A Hailer, Sijia Wang, Michelle Yuan, Jamie Chan, Abdallah Kurdi, David Han, Hira Ali, H Blaize D'Angio, Aaron T Mayer, Maha Rahim, Ayano Kondo, Daniel Klufas, Esther Kim, A Hunter Shain, Jaehyuk Choi, Tina Bhutani, Gregory Simpson, Roy C Grekin, Roberto R Ricardo-Gonzalez, Elizabeth Purdom, Jeffrey P North, Jeffrey B Cheng, Raymond J Cho
A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical response. Science immunology 9 (91) (2024)
Lieven Clement, Hsin-Jung Chou, Divya Kunda, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit, John Ngai, Whitney E Heavner
A Latent Activated Olfactory Stem Cell State Revealed by Single Cell Transcriptomic and Epigenomic Profiling. bioRxiv : the preprint server for biology (2023)
Hao Wang, William Torous, Boying Gong, Elizabeth Purdom
Visualizing scRNA-Seq Data at Population Scale with GloScope. bioRxiv : the preprint server for biology (2023)
Cheng Gao, Ling Xu, Liliam Montoya, Mary Madera, Joy Hollingsworth, Liang Chen, Elizabeth Purdom, Vasanth R Singan, John Vogel, Robert B Hutmacher, Jeffery A Dahlberg, Devin Coleman-Derr, Peggy G Lemaux, John W Taylor
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities. Nature communications 13 (1) (2022)
Yale Liu, Hao Wang, Mark A Taylor, Christopher Cook, Alejandra Martínez-Berdeja, Jeffrey P North, Paymann Harirchian, Ashley A Hailer, Zijun Zhao, Ruby Ghadially, Roberto R Ricardo-Gonzalez, Roy C Grekin, Theodora M Mauro, Esther Kim, Jaehyuk Choi, Elizabeth Purdom, Raymond J Cho, Jeffrey B Cheng
Classification of human chronic inflammatory skin disease based on single-cell immune profiling. Science immunology 7 (70) (2022)
Boying Gong, Yun Zhou, Elizabeth Purdom
Cobolt: integrative analysis of multimodal single-cell sequencing data. Genome biology 22 (1) (2021)
Ling Xu, Zhaobin Dong, Dawn Chiniquy, Grady Pierroz, Siwen Deng, Cheng Gao, Spencer Diamond, Tuesday Simmons, Heidi M-L Wipf, Daniel F Caddell, Nelle Varoquaux, Mary A Madera, Robert Hutmacher, Adam Deutschbauer, Jeffery A Dahlberg, Mary Lou Guerinot, Elizabeth Purdom, Jillian F Banfield, John W Taylor, Peggy G Lemaux, Devin Coleman-Derr
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics. Nature communications 12 (1) (2021)
Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S Adkins, Andrew I Aldridge, Seth A Ament, Anna Bartlett, M Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Hector Roux de Bezieux, Tommaso Biancalani, Ali Sina Booeshaghi, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Jonathan Crabtree, Heather H Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L Dougherty, Wayne I Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle G Giglio, Jeff Goldy, Michael J Hawrylycz, Brian R Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta D Lucero, Chongyuan Luo, Anup A Mahurkar, Delissa McMillen, Naeem M Nadaf, Joseph R Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia K Osteen, Trangthanh H Pham, António Pinto-Duarte, Olivier Poirion, Sebastian Preissl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline C Rivkin, Kimberly A Smith, Kelly Street, Josef Sulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles R Vanderburg, Cindy T J van Velthoven, Xinxin Wang, Owen R White, Z Josh Huang, Peter V Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D Welch, Jesse Gillis, Evan Z Macosko, Bing Ren, Joseph R Ecker, Hongkui Zeng, Eran A Mukamel
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature 598 (7879) (2021)
Stephanie C Hicks, Ruoxi Liu, Yuwei Ni, Elizabeth Purdom, Davide Risso
mbkmeans: Fast clustering for single cell data using mini-batch k-means. PLoS computational biology 17 (1) (2021)
Cheng Gao, Liliam Montoya, Ling Xu, Mary Madera, Joy Hollingsworth, Elizabeth Purdom, Vasanth R Singan, John Vogel, Robert B Hutmacher, Jeffery A Dahlberg, Devin Coleman-Derr, Peggy G Lemaux, John W Taylor
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics. Nature communications 11 (1) (2020)
David H Brann, Tatsuya Tsukahara, Caleb Weinreb, Marcela Lipovsek, Koen Van den Berge, Boying Gong, Rebecca K Chance, Iain C Macaulay, Hsin-Jung Chou, Russell B Fletcher, Diya Das, Kelly Street, Hector Roux de Bezieux, Yoon-Gi Choi, Davide Risso, Sandrine Dudoit, Elizabeth Purdom, Jonathan S Mill, Ralph Abi Hachem, Hiroaki Matsunami, Darren W Logan, Bradley J Goldstein, Matthew S Grubb, John Ngai, Sandeep Robert Datta
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. Science advances 6 (31) (2020)
Nelle Varoquaux, Benjamin Cole, Cheng Gao, Grady Pierroz, Christopher R Baker, Dhruv Patel-Tupper, Mary Madera, Tim Jeffers, Joy Hollingsworth, Julie Sievert, Yuko Yoshinaga, Judith A Owiti, Vasanth R Singan, Stephanie DeGraaf, Ling Xu, Matthew J Blow, Maria J Harrison, Axel Visel, Christer Jansson, Krishna K Niyogi, Robert Hutmacher, Devin Coleman-Derr, Ronan C O'Malley, John W Taylor, Jeffery Dahlberg, John P Vogel, Peggy G Lemaux, Elizabeth Purdom
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses. Proceedings of the National Academy of Sciences of the United States of America (2019)
Raymond J Cho, Ludmil B Alexandrov, Nicoline Y den Breems, Velina S Atanasova, Mehdi Farshchian, Elizabeth Purdom, Tran N Nguyen, Cristian Coarfa, Kimal I Rajapakshe, Marco Prisco, Joya Sahu, Patrick T Tassone, Evan J Greenawalt, Eric A Collisson, Wei Wu, Hui Yao, Xiaoping Su, Christina Guttmann-Gruber, Josefina Piñón Hofbauer, Raabia Hashmi, Ignacia Fuentes, Stephen Charles Benz, Justin Golovato, Erik A Ehli, Christel M Davis, Gareth E Davies, Kyle R Covington, Dedee Frances Murrell, Julio Cesar Salas-Alanis, Francis Palisson, Anna L Bruckner, William Robinson, Cristina Has, Leena Bruckner-Tuderman, Matthias Titeux, Marcel F Jonkman, Elham Rashidghamat, Su M Lwin, Jemima E Mellerio, John A McGrath, Johann W Bauer, Alain Hovnanian, Kenneth Y Tsai, Andrew P South
APOBEC mutation drives early-onset squamous cell carcinomas in recessive dystrophic epidermolysis bullosa. Science translational medicine 10 (455) (2019)
Davide Risso, Liam Purvis, Russell B Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. PLoS computational biology 14 (9) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Elizabeth Purdom