Terence P Speed (Terence Speed)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 25

Top Venues

Nature communications

Research square

Nature biotechnology

Science (New York, N.Y.)

Walter and Eliza Hall Institute of Medical Research

Monash University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Walter and Eliza Hall Institute of Medical Research Aug 01 1997

Australia

Lab head :: Bioinformatics

Education History

Monash University Jun 01 1965 - Mar 01 1969

Australia

PHD :: Mathematics

Publications

Burcu Gurun, Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar, Katelyn T Byrne, Robert H Vonderheide, Adam A Margolin, Motomi Mori, Paul T Spellman, Lisa M Coussens, Terence P Speed
An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences. Research square (2023)
Yuzhou Feng, Tianpei Yang, John Zhu, Mabel Li, Maria Doyle, Volkan Ozcoban, Greg T Bass, Angela Pizzolla, Lachlan Cain, Sirui Weng, Anupama Pasam, Nikolce Kocovski, Yu-Kuan Huang, Simon Paul Keam, Terence P Speed, Paul Joseph Neeson, Richard B Pearson, Shahneen Sandhu, David L Goode, Anna Sofia Trigos
Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments. Nature communications 14 (1) (2023)
Stefano Mangiola, Alexandra J Roth-Schulze, Marie Trussart, Enrique Zozaya-Valdés, Mengyao Ma, Zijie Gao, Alan F Rubin, Terence P Speed, Heejung Shim, Anthony T Papenfuss
sccomp: Robust differential composition and variability analysis for single-cell data. Proceedings of the National Academy of Sciences of the United States of America 120 (33) (2023)
Franco Caramia, Terence P Speed, Hui Shen, Ygal Haupt, Sue Haupt
Establishing the Link between X-Chromosome Aberrations and TP53 Status, with Breast Cancer Patient Outcomes. Cells 12 (18) (2023)
Burcu Gurun, Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar, Katelyn T Byrne, Robert H Vonderheide, Adam A Margolin, Motomi Mori, Paul T Spellman, Lisa M Coussens, Terence P Speed
An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences. Research square (2023)
Yuzhou Feng, Tianpei Yang, John Zhu, Mabel Li, Maria Doyle, Volkan Ozcoban, Greg T Bass, Angela Pizzolla, Lachlan Cain, Sirui Weng, Anupama Pasam, Nikolce Kocovski, Yu-Kuan Huang, Simon Paul Keam, Terence P Speed, Paul Joseph Neeson, Richard B Pearson, Shahneen Sandhu, David L Goode, Anna Sofia Trigos
Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments. Nature communications 14 (1) (2023)
Yuzhou Feng, Tianpei Yang, John Zhu, Mabel Li, Maria Doyle, Volkan Ozcoban, Greg T Bass, Angela Pizzolla, Lachlan Cain, Sirui Weng, Anupama Pasam, Nikolce Kocovski, Yu-Kuan Huang, Simon Paul Keam, Terence P Speed, Paul Joseph Neeson, Richard B Pearson, Shahneen Sandhu, David L Goode, Anna Sofia Trigos
Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments. Nature communications 14 (1) (2023)
Burcu Gurun, Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar, Katelyn T Byrne, Robert H Vonderheide, Adam A Margolin, Motomi Mori, Paul T Spellman, Lisa M Coussens, Terence P Speed
An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences. Research square (2023)
Simone L Park, Susan N Christo, Alexandria C Wells, Luke C Gandolfo, Ali Zaid, Yannick O Alexandre, Thomas N Burn, Jan Schroeder, Nicholas Collins, Seong-Ji Han, Stephane M Guillaume, Maximilien Evrard, Clara Castellucci, Brooke Davies, Maleika Osman, Andreas Obers, Keely M McDonald, Huimeng Wang, Scott N Mueller, George Kannourakis, Stuart P Berzins, Lisa A Mielke, Francis R Carbone, Axel Kallies, Terence P Speed, Yasmine Belkaid, Laura K Mackay
Divergent molecular networks program functionally distinct CD8 + skin-resident memory T cells. Science (New York, N.Y.) 382 (6674) (2023)
Agus Salim, Ramyar Molania, Jianan Wang, Alysha De Livera, Rachel Thijssen, Terence P Speed
RUV-III-NB: normalization of single cell RNA-seq data. Nucleic acids research 50 (16) (2022)
Ramyar Molania, Momeneh Foroutan, Johann A Gagnon-Bartsch, Luke C Gandolfo, Aryan Jain, Abhishek Sinha, Gavriel Olshansky, Alexander Dobrovic, Anthony T Papenfuss, Terence P Speed
Removing unwanted variation from large-scale RNA sequencing data with PRPS. Nature biotechnology (2022)
Shaolong Cao, Jennifer R Wang, Shuangxi Ji, Peng Yang, Yaoyi Dai, Shuai Guo, Matthew D Montierth, John Paul Shen, Xiao Zhao, Jingxiao Chen, Jaewon James Lee, Paola A Guerrero, Nicholas Spetsieris, Nikolai Engedal, Sinja Taavitsainen, Kaixian Yu, Julie Livingstone, Vinayak Bhandari, Shawna Marie Hubert, Najat C Daw, P Andrew Futreal, Eleni Efstathiou, Bora Lim, Andrea Viale, Jianjun Zhang, Matti Nykter, Bogdan A Czerniak, Powel H Brown, Charles Swanton, Pavlos Msaouel, Anirban Maitra, Edmund S Kopetz, Peter J Campbell, Terence P Speed, Paul C Boutros, Hongtu Zhu, Alfonso Urbanucci, Jonas Demeulemeester, Peter Van Loo, Wenyi Wang
Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. Nature biotechnology 40 (11) (2022)
Raíssa Fonseca, Thomas N Burn, Luke C Gandolfo, Sapna Devi, Simone L Park, Andreas Obers, Maximilien Evrard, Susan N Christo, Frank A Buquicchio, Caleb A Lareau, Keely M McDonald, Sarah K Sandford, Natasha M Zamudio, Nagela G Zanluqui, Ali Zaid, Terence P Speed, Ansuman T Satpathy, Scott N Mueller, Francis R Carbone, Laura K Mackay
Runx3 drives a CD8 + T cell tissue residency program that is absent in CD4 + T cells. Nature immunology 23 (8) (2022)
Momeneh Foroutan, Ramyar Molania, Aline Pfefferle, Corina C Behrenbruch, Sebastian Scheer, Axel Kallies, Terence P Speed, Joseph Cursons, Nicholas D Huntington
The Ratio of Exhausted to Resident Infiltrating Lymphocytes Is Prognostic for Colorectal Cancer Patient Outcome. Cancer immunology research 9 (10) (2021)
Taiyun Kim, Owen Tang, Stephen T Vernon, Katharine A Kott, Yen Chin Koay, John Park, David E James, Stuart M Grieve, Terence P Speed, Pengyi Yang, Gemma A Figtree, John F O'Sullivan, Jean Yee Hwa Yang
A hierarchical approach to removal of unwanted variation for large-scale metabolomics data. Nature communications 12 (1) (2021)
Yingxin Lin, Yue Cao, Hani Jieun Kim, Agus Salim, Terence P Speed, David M Lin, Pengyi Yang, Jean Yee Hwa Yang
scClassify: sample size estimation and multiscale classification of cells using single and multiple reference. Molecular systems biology 16 (6) (2021)
Susan N Christo, Maximilien Evrard, Simone L Park, Luke C Gandolfo, Thomas N Burn, Raissa Fonseca, Dane M Newman, Yannick O Alexandre, Nicholas Collins, Natasha M Zamudio, Fernando Souza-Fonseca-Guimaraes, Daniel G Pellicci, David Chisanga, Wei Shi, Laurent Bartholin, Gabrielle T Belz, Nicholas D Huntington, Andrew Lucas, Michaela Lucas, Scott N Mueller, William R Heath, Florent Ginhoux, Terence P Speed, Francis R Carbone, Axel Kallies, Laura K Mackay
Discrete tissue microenvironments instruct diversity in resident memory T cell function and plasticity. Nature immunology 22 (9) (2021)
Laurent Jacob, Anke Witteveen, Inès Beumer, Leonie Delahaye, Diederik Wehkamp, Jeroen van den Akker, Mireille Snel, Bob Chan, Arno Floore, Niels Bakx, Guido Brink, Coralie Poncet, Jan Bogaerts, Mauro Delorenzi, Martine Piccart, Emiel Rutgers, Fatima Cardoso, Terence P Speed, Laura van 't Veer, Annuska M Glas
Controlling technical variation amongst 6693 patient microarrays of the randomized MINDACT trial. Communications biology 3 (1) (2020)
Rebecca C Poulos, Peter G Hains, Rohan Shah, Natasha Lucas, Dylan Xavier, Srikanth S Manda, Asim Anees, Jennifer M S Koh, Sadia Mahboob, Max Wittman, Steven G Williams, Erin K Sykes, Michael Hecker, Michael Dausmann, Merridee A Wouters, Keith Ashman, Jean Yee Hwa Yang, Peter J Wild, Anna De Fazio, Rosemary L Balleine, Brett J Tully, Ruedi Aebersold, Terence P Speed, Yansheng Liu, Roger R Reddel, Phillip J Robinson, Qing Zhong
Strategies to enable large-scale proteomics for reproducible research. Nature communications 11 (1) (2020)
Melissa M Gresle, Margaret A Jordan, Jim Stankovich, Tim Spelman, Laura J Johnson, Louise Laverick, Alison Hamlett, Letitia D Smith, Vilija G Jokubaitis, Josephine Baker, Jodi Haartsen, Bruce Taylor, Jac C Charlesworth, Melanie Bahlo, Terence P Speed, Matthew A Brown, Judith Field, Alan G Baxter, Helmut Butzkueven
Multiple sclerosis risk variants regulate gene expression in innate and adaptive immune cells. Life science alliance 3 (7) (2020)
Marie Trussart, Charis E Teh, Tania Tan, Lawrence Leong, Daniel H D Gray, Terence P Speed
Removing unwanted variation with CytofRUV to integrate multiple CyTOF datasets. eLife 9 (2020)
Damien G Hicks, Terence P Speed, Mohammed Yassin, Sarah M Russell
Maps of variability in cell lineage trees. PLoS computational biology 15 (2) (2019)
Sue Haupt, Franco Caramia, Alan Herschtal, Thierry Soussi, Guillermina Lozano, Hu Chen, Han Liang, Terence P Speed, Ygal Haupt
Identification of cancer sex-disparity in the functional integrity of p53 and its X chromosome network. Nature communications 10 (1) (2019)
Yong Jin Choi, Chao-Po Lin, Davide Risso, Sean Chen, Thomas Aquinas Kim, Meng How Tan, Jin Billy Li, Yalei Wu, Caifu Chen, Zhenyu Xuan, Todd S Macfarlan, Weiqun Peng, Kevin C Kent Lloyd, Sang Yong Kim, Terence P Speed, Lin He
Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells. Science (New York, N.Y.) 355 (6325) (2017)
Daniel L Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, Alexander Dobrovic, Terence P Speed, Anthony T Papenfuss
GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly. Genome research 27 (12) (2017)

Terence P Speed.css-eqlu8i{font-size:small;padding-left:4px;} (Terence Speed)

Publication Activity (10 Years)

Top Topics

Top Venues

Terence P Speed (Terence Speed)