Leonardo Collado-Torres (L Collado-Torres)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 72

Top Venues

bioRxiv : the preprint server for biology

eLife

Bioinformatics advances

Nature neuroscience

Lieber Institute for Brain Development

Johns Hopkins University Bloomberg School of Public Health (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Lieber Institute for Brain Development Aug 22 2016

United States

Staff Scientist :: Data Science

Winter Genomics

Mexico

Data Science Division Leader :: Data Science

Education History

Johns Hopkins University Bloomberg School of Public Health Aug 18 2011 - Jul 22 2016

United States

PHD :: Biostatistics

Publications

Lukas M Weber, Heena R Divecha, Matthew N Tran, Sang Ho Kwon, Abby Spangler, Kelsey D Montgomery, Madhavi Tippani, Rahul Bharadwaj, Joel E Kleinman, Stephanie Cerceo Page, Thomas M Hyde, Leonardo Collado-Torres, Kristen R Maynard, Keri Martinowich, Stephanie C Hicks
The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics. eLife 12 (2024)
Sean K Maden, Louise A Huuki-Myers, Sang Ho Kwon, Leonardo Collado-Torres, Kristen R Maynard, Stephanie C Hicks
lute : estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew N Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard, null null
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science (New York, N.Y.) 384 (6698) (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Sean K Maden, Nicholas J Eagles, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Nicholas J Eagles, Svitlana V Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A Miller, Thomas M Hyde, Stephanie Cerceo Page, Keri Martinowich, Leonardo Collado-Torres
Integrating gene expression and imaging data across Visium capture areas with visiumStitched. bioRxiv : the preprint server for biology (2024)
Sean K Maden, Louise A Huuki-Myers, Sang Ho Kwon, Leonardo Collado-Torres, Kristen R Maynard, Stephanie C Hicks
lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression. bioRxiv : the preprint server for biology (2024)
Ege A Yalcinbas, Bukola Ajanaku, Erik D Nelson, Renee Garcia-Flores, Kelsey D Montgomery, Joshua M Stolz, Joshua Wu, Heena R Divecha, Atharv Chandra, Rahul A Bharadwaj, Svitlana V Bach, Anandita Rajpurohit, Ran Tao, Joo-Heon Shin, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Louise A Huuki-Myers, Leonardo Collado-Torres, Kristen R Maynard
Transcriptomic analysis of the human habenula in schizophrenia. bioRxiv : the preprint server for biology (2024)
Lukas M Weber, Heena R Divecha, Matthew N Tran, Sang Ho Kwon, Abby Spangler, Kelsey D Montgomery, Madhavi Tippani, Rahul Bharadwaj, Joel E Kleinman, Stephanie Cerceo Page, Thomas M Hyde, Leonardo Collado-Torres, Kristen R Maynard, Keri Martinowich, Stephanie C Hicks
The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics. eLife 12 (2024)
Nicholas J Eagles, Svitlana V Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A Miller, Thomas M Hyde, Stephanie Cerceo Page, Keri Martinowich, Leonardo Collado-Torres
Integrating gene expression and imaging data across Visium capture areas with visiumStitched. bioRxiv : the preprint server for biology (2024)
Nicholas J Eagles, Svitlana V Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A Miller, Thomas M Hyde, Stephanie Cerceo Page, Keri Martinowich, Leonardo Collado-Torres
Integrating gene expression and imaging data across Visium capture areas with visiumStitched. bioRxiv : the preprint server for biology (2024)
Lukas M Weber, Heena R Divecha, Matthew N Tran, Sang Ho Kwon, Abby Spangler, Kelsey D Montgomery, Madhavi Tippani, Rahul Bharadwaj, Joel E Kleinman, Stephanie Cerceo Page, Thomas M Hyde, Leonardo Collado-Torres, Kristen R Maynard, Keri Martinowich, Stephanie C Hicks
The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics. eLife 12 (2024)
Lukas M Weber, Heena R Divecha, Matthew N Tran, Sang Ho Kwon, Abby Spangler, Kelsey D Montgomery, Madhavi Tippani, Rahul Bharadwaj, Joel E Kleinman, Stephanie Cerceo Page, Thomas M Hyde, Leonardo Collado-Torres, Kristen R Maynard, Keri Martinowich, Stephanie C Hicks
The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics. eLife 12 (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Sean K Maden, Louise A Huuki-Myers, Sang Ho Kwon, Leonardo Collado-Torres, Kristen R Maynard, Stephanie C Hicks
lute : estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression. bioRxiv : the preprint server for biology (2024)
Ege A Yalcinbas, Bukola Ajanaku, Erik D Nelson, Renee Garcia-Flores, Kelsey D Montgomery, Joshua M Stolz, Joshua Wu, Heena R Divecha, Atharv Chandra, Rahul A Bharadwaj, Svitlana V Bach, Anandita Rajpurohit, Ran Tao, Joo-Heon Shin, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Louise A Huuki-Myers, Leonardo Collado-Torres, Kristen R Maynard
Transcriptomic analysis of the human habenula in schizophrenia. bioRxiv : the preprint server for biology (2024)
Erik D Nelson, Madhavi Tippani, Anthony D Ramnauth, Heena R Divecha, Ryan A Miller, Nicholas J Eagles, Elizabeth A Pattie, Sang Ho Kwon, Svitlana V Bach, Uma M Kaipa, Jianing Yao, Joel E Kleinman, Leonardo Collado-Torres, Shizhong Han, Kristen R Maynard, Thomas M Hyde, Keri Martinowich, Stephanie Cerceo Page, Stephanie C Hicks
An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew N Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard, null null
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science (New York, N.Y.) 384 (6698) (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Sean K Maden, Nicholas J Eagles, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew N Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard, null null
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science (New York, N.Y.) 384 (6698) (2024)
Ege A Yalcinbas, Bukola Ajanaku, Erik D Nelson, Renee Garcia-Flores, Kelsey D Montgomery, Joshua M Stolz, Joshua Wu, Heena R Divecha, Atharv Chandra, Rahul A Bharadwaj, Svitlana V Bach, Anandita Rajpurohit, Ran Tao, Joo-Heon Shin, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Louise A Huuki-Myers, Leonardo Collado-Torres, Kristen R Maynard
Transcriptomic analysis of the human habenula in schizophrenia. bioRxiv : the preprint server for biology (2024)
Ege A Yalcinbas, Bukola Ajanaku, Erik D Nelson, Renee Garcia-Flores, Nicholas J Eagles, Kelsey D Montgomery, Joshua M Stolz, Joshua Wu, Heena R Divecha, Atharv Chandra, Rahul A Bharadwaj, Svitlana V Bach, Anandita Rajpurohit, Ran Tao, Geo Pertea, Joo-Heon Shin, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Louise A Huuki-Myers, Leonardo Collado-Torres, Kristen R Maynard
Transcriptomic analysis of the human habenula in schizophrenia. bioRxiv : the preprint server for biology (2024)
Erik D Nelson, Madhavi Tippani, Anthony D Ramnauth, Heena R Divecha, Ryan A Miller, Nicholas J Eagles, Elizabeth A Pattie, Sang Ho Kwon, Svitlana V Bach, Uma M Kaipa, Jianing Yao, Joel E Kleinman, Leonardo Collado-Torres, Shizhong Han, Kristen R Maynard, Thomas M Hyde, Keri Martinowich, Stephanie Cerceo Page, Stephanie C Hicks
An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus. bioRxiv : the preprint server for biology (2024)
Ege A Yalcinbas, Bukola Ajanaku, Erik D Nelson, Renee Garcia-Flores, Kelsey D Montgomery, Joshua M Stolz, Joshua Wu, Heena R Divecha, Atharv Chandra, Rahul A Bharadwaj, Svitlana V Bach, Anandita Rajpurohit, Ran Tao, Joo-Heon Shin, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Louise A Huuki-Myers, Leonardo Collado-Torres, Kristen R Maynard
Transcriptomic analysis of the human habenula in schizophrenia. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew N Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard, null null
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science (New York, N.Y.) 384 (6698) (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Joo Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Genetic and environmental contributions to ancestry differences in gene expression in the human brain. bioRxiv : the preprint server for biology (2023)
Lionel A Rodriguez, Matthew Nguyen Tran, Renee Garcia-Flores, Elizabeth A Pattie, Heena R Divecha, Sun Hong Kim, Joo-Heon Shin, Yong Kyu Lee, Carly Montoya, Andrew E Jaffe, Leonardo Collado-Torres, Stephanie Cerceo Page, Keri Martinowich
TrkB-dependent regulation of molecular signaling across septal cell types. bioRxiv : the preprint server for biology (2023)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Stephanie C Page, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue. Genome biology 24 (1) (2023)
Leonardo Collado-Torres, Lambertus Klei, Chunyu Liu, Joel E Kleinman, Thomas M Hyde, Daniel H Geschwind, Michael J Gandal, Bernie Devlin, Daniel R Weinberger
Comparison of gene expression in living and postmortem human brain. medRxiv : the preprint server for health sciences (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. bioRxiv : the preprint server for biology (2023)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew Nguyen Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex. bioRxiv : the preprint server for biology (2023)
Anthony D Ramnauth, Madhavi Tippani, Heena R Divecha, Alexis R Papariello, Ryan A Miller, Elizabeth A Pattie, Joel E Kleinman, Kristen R Maynard, Leonardo Collado-Torres, Thomas M Hyde, Keri Martinowich, Stephanie C Hicks, Stephanie Cerceo Page
Spatially-resolved transcriptomics of human dentate gyrus across postnatal lifespan reveals heterogeneity in markers for proliferation, extracellular matrix, and neuroinflammation. bioRxiv : the preprint server for biology (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. bioRxiv : the preprint server for biology (2023)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew Nguyen Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex. bioRxiv : the preprint server for biology (2023)
Nicholas J Eagles, Richard Wilton, Andrew E Jaffe, Leonardo Collado-Torres
BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data. BMC bioinformatics 24 (1) (2023)
Bo-Yi Guo, Louise A Huuki-Myers, Melissa Grant-Peters, Leonardo Collado-Torres, Stephanie C Hicks
escheR: unified multi-dimensional visualizations with Gestalt principles. Bioinformatics advances 3 (1) (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. bioRxiv : the preprint server for biology (2023)
Bo-Yi Guo, Louise A Huuki-Myers, Melissa Grant-Peters, Leonardo Collado-Torres, Stephanie C Hicks
escheR: unified multi-dimensional visualizations with Gestalt principles. Bioinformatics advances 3 (1) (2023)
Bo-Yi Guo, Louise A Huuki-Myers, Melissa Grant-Peters, Leonardo Collado-Torres, Stephanie C Hicks
escheR: unified multi-dimensional visualizations with Gestalt principles. Bioinformatics advances 3 (1) (2023)
Sonia Garcia-Ruiz, David Zhang, Emil Karl Gustavsson, G Rocamora-Perez, Melissa Grant-Peters, Aine Fairbrother-Browne, Regina Hertfelder Reynolds, Jonathan William Brenton, Ana Luisa Gil-Martinez, Zhongbo Chen, Donald C Rio, Juan A Botía, Mar Matarin, Leonardo Collado-Torres, Mina Ryten
Splicing accuracy varies across human introns, tissues and age. bioRxiv : the preprint server for biology (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Erik D Nelson, Kristen R Maynard, Kyndall R Nicholas, Matthew Nguyen Tran, Heena R Divecha, Leonardo Collado-Torres, Stephanie C Hicks, Keri Martinowich
Activity-regulated gene expression across cell types of the mouse hippocampus. Hippocampus (2023)
Bo-Yi Guo, Louise A Huuki-Myers, Melissa Grant-Peters, Leonardo Collado-Torres, Stephanie C Hicks
escheR: unified multi-dimensional visualizations with Gestalt principles. Bioinformatics advances 3 (1) (2023)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew Nguyen Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex. bioRxiv : the preprint server for biology (2023)
Bo-Yi Guo, Louise A Huuki-Myers, Melissa Grant-Peters, Leonardo Collado-Torres, Stephanie C Hicks
escheR: unified multi-dimensional visualizations with Gestalt principles. Bioinformatics advances 3 (1) (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. bioRxiv : the preprint server for biology (2023)
Dario Righelli, Lukas M Weber, Helena Lucia Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T L Lun, Stephanie C Hicks, Davide Risso
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor. Bioinformatics (Oxford, England) 38 (11) (2022)
Kynon J M Benjamin, Qiang Chen, Andrew E Jaffe, Joshua M Stolz, Leonardo Collado-Torres, Louise A Huuki-Myers, Emily E Burke, Ria Arora, Arthur Sant'Anna Feltrin, André Rocha Barbosa, Eugenia Radulescu, Giulio Pergola, Joo Heon Shin, William S Ulrich, Amy Deep-Soboslay, Ran Tao, null null, Thomas M Hyde, Joel E Kleinman, Jennifer A Erwin, Daniel R Weinberger, Apua C M Paquola
Analysis of the caudate nucleus transcriptome in individuals with schizophrenia highlights effects of antipsychotics and new risk genes. Nature neuroscience 25 (11) (2022)
Brenda Pardo, Abby Spangler, Lukas M Weber, Stephanie C Page, Stephanie C Hicks, Andrew E Jaffe, Keri Martinowich, Kristen R Maynard, Leonardo Collado-Torres
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data. BMC genomics 23 (1) (2022)
Peter P Zandi, Andrew E Jaffe, Fernando S Goes, Emily E Burke, Leonardo Collado-Torres, Louise Huuki-Myers, Arta Seyedian, Yian Lin, Fayaz T Seifuddin, Mehdi Pirooznia, Christopher A Ross, Joel E Kleinman, Daniel R Weinberger, Thomas M Hyde
Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways. Nature neuroscience 25 (3) (2022)
Gabriel E Hoffman, Andrew E Jaffe, Michael J Gandal, Leonardo Collado-Torres, Solveig K Sieberts, Bernie Devlin, Daniel H Geschwind, Daniel R Weinberger, Panagiotis Roussos
Comment on: What genes are differentially expressed in individuals with schizophrenia? A systematic review. Molecular psychiatry (2022)
Nicholas J Eagles, Emily E Burke, Jacob Leonard, Brianna K Barry, Joshua M Stolz, Louise Huuki, BaDoi N Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E Jaffe, Leonardo Collado-Torres
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. BMC bioinformatics 22 (1) (2021)
Kira A Perzel Mandell, Nicholas J Eagles, Richard Wilton, Amanda J Price, Stephen Andrew Semick, Leonardo Collado-Torres, William S Ulrich, Ran Tao, Shizhong Han, Alexander S Szalay, Thomas M Hyde, Joel E Kleinman, Daniel R Weinberger, Andrew E Jaffe
Genome-wide sequencing-based identification of methylation quantitative trait loci and their role in schizophrenia risk. Nature communications 12 (1) (2021)
Kristen R Maynard, Leonardo Collado-Torres, Lukas M Weber, Cedric Uytingco, Brianna K Barry, Stephen R Williams, Joseph L Catallini, Matthew Nguyen Tran, Zachary Besich, Madhavi Tippani, Jennifer Chew, Yifeng Yin, Joel E Kleinman, Thomas M Hyde, Nikhil Rao, Stephanie C Hicks, Keri Martinowich, Andrew E Jaffe
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex. Nature neuroscience 24 (3) (2021)
Nicholas J Eagles, Emily E Burke, Jacob Leonard, Brianna K Barry, Joshua M Stolz, Louise Huuki, BaDoi N Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E Jaffe, Leonardo Collado-Torres
Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses. BMC bioinformatics 22 (1) (2021)
Yoichi Araki, Ingie Hong, Timothy R Gamache, Shaowen Ju, Leonardo Collado-Torres, Joo Heon Shin, Richard L Huganir
SynGAP isoforms differentially regulate synaptic plasticity and dendritic development. eLife 9 (2020)
Sebastian Guelfi, Karishma D'Sa, Juan A Botía, Jana Vandrovcova, Regina Hertfelder Reynolds, David Zhang, Daniah Trabzuni, Leonardo Collado-Torres, Andrew Thomason, Pedro Quijada Leyton, Sarah A Gagliano Taliun, Mike A Nalls, null null, null null, Kerrin S Small, Colin Smith, Adaikalavan Ramasamy, John Hardy, Michael E Weale, Mina Ryten
Regulatory sites for splicing in human basal ganglia are enriched for disease-relevant information. Nature communications 11 (1) (2020)
Andrew E Jaffe, Daniel J Hoeppner, Takeshi Saito, Lou T Blanpain, Joy Ukaigwe, Emily E Burke, Leonardo Collado-Torres, Ran Tao, Katsunori Tajinda, Kristen R Maynard, Matthew N Tran, Keri Martinowich, Amy Deep-Soboslay, Joo Heon Shin, Joel E Kleinman, Daniel R Weinberger, Mitsuyuki Matsumoto, Thomas M Hyde
Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk. Nature neuroscience 23 (4) (2020)
Emily E Burke, Joshua G Chenoweth, Joo Heon Shin, Leonardo Collado-Torres, Suel-Kee Kim, Nicola Micali, Yanhong Wang, Carlo Colantuoni, Richard E Straub, Daniel J Hoeppner, Huei-Ying Chen, Alana Sellers, Kamel Shibbani, Gregory R Hamersky, Marcelo Diaz Bustamante, BaDoi N Phan, William S Ulrich, Cristian Valencia, Amritha Jaishankar, Amanda J Price, Anandita Rajpurohit, Stephen A Semick, Roland W Bürli, James C Barrow, Daniel J Hiler, Stephanie C Page, Keri Martinowich, Thomas M Hyde, Joel E Kleinman, Karen F Berman, Jose A Apud, Alan J Cross, Nicholas J Brandon, Daniel R Weinberger, Brady J Maher, Ronald D G McKay, Andrew E Jaffe
Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs. Nature communications 11 (1) (2020)
David Zhang, Sebastian Guelfi, Sonia Garcia-Ruiz, Beatrice Costa, Regina Hertfelder Reynolds, Karishma D'Sa, Wenfei Liu, Thomas Courtin, Amy Peterson, Andrew E Jaffe, John A Hardy, Juan A Botía, Leonardo Collado-Torres, Mina Ryten
Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders. Science advances 6 (24) (2020)
Kira A Perzel Mandell, Amanda J Price, Richard Wilton, Leonardo Collado-Torres, Ran Tao, Nicholas J Eagles, Alexander S Szalay, Thomas M Hyde, Daniel R Weinberger, Joel E Kleinman, Andrew E Jaffe
Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex. Epigenetics 16 (1) (2020)
Eddie Luidy Imada, Diego Fernando Sanchez, Leonardo Collado-Torres, Christopher Wilks, Tejasvi Matam, Wikum Dinalankara, Aleksey Stupnikov, Francisco Pereira Lobo, Chi-Wai Yip, Kayoko Yasuzawa, Naoto Kondo, Masayoshi Itoh, Harukazu Suzuki, Takeya Kasukawa, Chung-Chau Hon, Michiel J L de Hoon, Jay W Shin, Piero Carnici, Andrew E Jaffe, Jeffery T Leek, Alexander V Favorov, Gloria R Franco, Ben Langmead, Luigi Marchionni
Recounting the FANTOM CAGE-Associated Transcriptome. Genome research 30 (7) (2020)
Leonardo Collado-Torres, Abhinav Nellore, Kai Kammers, Shannon E Ellis, Margaret A Taub, Kaspar D Hansen, Andrew E Jaffe, Ben Langmead, Jeffrey T Leek
Reproducible RNA-seq analysis using recount2. Nature biotechnology 35 (4) (2018)
Stephen Andrew Semick, Leonardo Collado-Torres, Christina A Markunas, Joo Heon Shin, Amy Deep-Soboslay, Ran Tao, Marilyn A Huestis, Laura J Bierut, Brion S Maher, Eric O Johnson, Thomas M Hyde, Daniel R Weinberger, Dana B Hancock, Joel E Kleinman, Andrew E Jaffe
Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome. Molecular psychiatry 25 (12) (2018)
Andrew E Jaffe, Richard E Straub, Joo Heon Shin, Ran Tao, Yuan Gao, Leonardo Collado-Torres, Tony Kam-Thong, Hualin S Xi, Jie Quan, Qiang Chen, Carlo Colantuoni, William S Ulrich, Brady J Maher, Amy Deep-Soboslay, null null, Alan J Cross, Nicholas J Brandon, Jeffrey T Leek, Thomas M Hyde, Joel E Kleinman, Daniel R Weinberger
Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis. Nature neuroscience 21 (8) (2018)
Leonardo Collado-Torres, Abhinav Nellore, Andrew E Jaffe
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor. F1000Research 6 (2017)

Leonardo Collado-Torres.css-eqlu8i{font-size:small;padding-left:4px;} (L Collado-Torres)

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Leonardo Collado-Torres (L Collado-Torres)