De-Chen Lin

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 27

Top Topics

Squamous Cell Carcinoma

Transcription Factor

Immune Response

Top Venues

Nature communications

Cell death & disease

Disease models & mechanisms

Cancer research

This page only lists publications with an associated author ORCID identifier.

Publications

Benjamin Ziman, Qian Yang, Yueyuan Zheng, Megha Sheth, Chehyun Nam, Hua Zhao, Le Zhang, Boyan Hu, Neil A Bhowmick, Uttam K Sinha, De-Chen Lin
Epigenomic analyses identify FOXM1 as a key regulator of anti-tumor immune response in esophageal adenocarcinoma. Cell death & disease 15 (2) (2024)
Benjamin Ziman, Qian Yang, Yueyuan Zheng, Megha Sheth, Chehyun Nam, Hua Zhao, Le Zhang, Boyan Hu, Neil A Bhowmick, Uttam K Sinha, De-Chen Lin
Epigenomic analyses identify FOXM1 as a key regulator of anti-tumor immune response in esophageal adenocarcinoma. Cell death & disease 15 (2) (2024)
Yuan Jiang, Hua Zhao, Shuai Kong, Dan Zhou, Jinxiu Dong, Yulan Cheng, Shuo Zhang, Fei Wang, Andrew Kalra, Nina Yang, Dan-Dan Wei, Jian Chen, Yuan-Wei Zhang, De-Chen Lin, Stephen J Meltzer, Yan-Yi Jiang
Establishing mouse and human oral esophageal organoids to investigate the tumor immune response. Disease models & mechanisms 17 (1) (2024)
Yuan Jiang, Hua Zhao, Shuai Kong, Dan Zhou, Jinxiu Dong, Yulan Cheng, Shuo Zhang, Fei Wang, Andrew Kalra, Nina Yang, Dan-Dan Wei, Jian Chen, Yuan-Wei Zhang, De-Chen Lin, Stephen J Meltzer, Yan-Yi Jiang
Establishing mouse and human oral esophageal organoids to investigate the tumor immune response. Disease models & mechanisms 17 (1) (2024)
Yuan Jiang, Hua Zhao, Shuai Kong, Dan Zhou, Jinxiu Dong, Yulan Cheng, Shuo Zhang, Fei Wang, Andrew Kalra, Nina Yang, Dan-Dan Wei, Jian Chen, Yuan-Wei Zhang, De-Chen Lin, Stephen J Meltzer, Yan-Yi Jiang
Establishing mouse and human oral esophageal organoids to investigate the tumor immune response. Disease models & mechanisms 17 (1) (2024)
Yuan Jiang, Yueyuan Zheng, Yuan-Wei Zhang, Shuai Kong, Jinxiu Dong, Fei Wang, Benjamin Ziman, Sigal Gery, Jia-Jie Hao, Dan Zhou, Jianian Zhou, Allen S Ho, Uttam K Sinha, Jian Chen, Shuo Zhang, Chuntong Yin, Dan-Dan Wei, Masaharu Hazawa, Huaguang Pan, Zhihao Lu, Wen-Qiang Wei, Ming-Rong Wang, H Phillip Koeffler, De-Chen Lin, Yan-Yi Jiang
Reciprocal inhibition between TP63 and STAT1 regulates anti-tumor immune response through interferon-γ signaling in squamous cancer. Nature communications 15 (1) (2024)
Benjamin Ziman, Qian Yang, Yueyuan Zheng, Megha Sheth, Chehyun Nam, Hua Zhao, Le Zhang, Boyan Hu, Neil A Bhowmick, Uttam K Sinha, De-Chen Lin
Epigenomic analyses identify FOXM1 as a key regulator of anti-tumor immune response in esophageal adenocarcinoma. Cell death & disease 15 (2) (2024)
Benjamin Ziman, Qian Yang, Yueyuan Zheng, Megha Sheth, Chehyun Nam, Hua Zhao, Le Zhang, Boyan Hu, Neil A Bhowmick, Uttam K Sinha, De-Chen Lin
Epigenomic analyses identify FOXM1 as a key regulator of anti-tumor immune response in esophageal adenocarcinoma. Cell death & disease 15 (2) (2024)
Benjamin Ziman, Qian Yang, Yueyuan Zheng, Megha Sheth, Chehyun Nam, Hua Zhao, Le Zhang, Boyan Hu, Neil A Bhowmick, Uttam K Sinha, De-Chen Lin
Epigenomic analyses identify FOXM1 as a key regulator of anti-tumor immune response in esophageal adenocarcinoma. Cell death & disease 15 (2) (2024)
Yuan Jiang, Yueyuan Zheng, Yuan-Wei Zhang, Shuai Kong, Jinxiu Dong, Fei Wang, Benjamin Ziman, Sigal Gery, Jia-Jie Hao, Dan Zhou, Jianian Zhou, Allen S Ho, Uttam K Sinha, Jian Chen, Shuo Zhang, Chuntong Yin, Dan-Dan Wei, Masaharu Hazawa, Huaguang Pan, Zhihao Lu, Wen-Qiang Wei, Ming-Rong Wang, H Phillip Koeffler, De-Chen Lin, Yan-Yi Jiang
Reciprocal inhibition between TP63 and STAT1 regulates anti-tumor immune response through interferon-γ signaling in squamous cancer. Nature communications 15 (1) (2024)
Yuan Jiang, Hua Zhao, Shuai Kong, Dan Zhou, Jinxiu Dong, Yulan Cheng, Shuo Zhang, Fei Wang, Andrew Kalra, Nina Yang, Dan-Dan Wei, Jian Chen, Yuan-Wei Zhang, De-Chen Lin, Stephen J Meltzer, Yan-Yi Jiang
Establishing mouse and human oral esophageal organoids to investigate the tumor immune response. Disease models & mechanisms 17 (1) (2024)
Yuan Jiang, Yueyuan Zheng, Yuan-Wei Zhang, Shuai Kong, Jinxiu Dong, Fei Wang, Benjamin Ziman, Sigal Gery, Jia-Jie Hao, Dan Zhou, Jianian Zhou, Allen S Ho, Uttam K Sinha, Jian Chen, Shuo Zhang, Chuntong Yin, Dan-Dan Wei, Masaharu Hazawa, Huaguang Pan, Zhihao Lu, Wen-Qiang Wei, Ming-Rong Wang, H Phillip Koeffler, De-Chen Lin, Yan-Yi Jiang
Reciprocal inhibition between TP63 and STAT1 regulates anti-tumor immune response through interferon-γ signaling in squamous cancer. Nature communications 15 (1) (2024)
Xue-Bin Ran, Ling-Wen Ding, Qiao-Yang Sun, Henry Yang, Jonathan W Said, Zhentang Lao, Vikas Madan, Pushkar Dakle, Jin-Fen Xiao, Xinyi Loh, Ying Li, Liang Xu, Xiao-Qiang Xiang, Ling-Zhi Wang, Boon Cher Goh, De-Chen Lin, Wee-Joo Chng, Soo Yong Tan, Sudhakar Jha, H Phillip Koeffler
Targeting RNA Exonuclease XRN1 Potentiates Efficacy of Cancer Immunotherapy. Cancer research 83 (6) (2023)
De-Chen Lin
Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nature communications 14 (1) (2023)
Xue-Bin Ran, Ling-Wen Ding, Qiao-Yang Sun, Henry Yang, Jonathan W Said, Zhentang Lao, Vikas Madan, Pushkar Dakle, Jin-Fen Xiao, Xinyi Loh, Ying Li, Liang Xu, Xiao-Qiang Xiang, Ling-Zhi Wang, Boon Cher Goh, De-Chen Lin, Wee-Joo Chng, Soo Yong Tan, Sudhakar Jha, H Phillip Koeffler
Targeting RNA exonuclease XRN1 potentiates efficacy of cancer immunotherapy. Cancer research (2023)
Young Min Park, De-Chen Lin
Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics. Nature communications 14 (1) (2023)
Xue-Bin Ran, Ling-Wen Ding, Qiao-Yang Sun, Henry Yang, Jonathan W Said, Zhentang Lao, Vikas Madan, Pushkar Dakle, Jin-Fen Xiao, Xinyi Loh, Ying Li, Liang Xu, Xiao-Qiang Xiang, Ling-Zhi Wang, Boon Cher Goh, De-Chen Lin, Wee-Joo Chng, Soo Yong Tan, Sudhakar Jha, H Phillip Koeffler
Targeting RNA Exonuclease XRN1 Potentiates Efficacy of Cancer Immunotherapy. Cancer research 83 (6) (2023)
De-Chen Lin
Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nature communications 14 (1) (2023)
De-Chen Lin
Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nature communications 14 (1) (2023)
Yueyuan Zheng, Benjamin Ziman, Allen S Ho, Uttam K Sinha, Li-Yan Xu, En-Min Li, H Phillip Koeffler, Benjamin P Berman, De-Chen Lin
Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation. Genome biology 24 (1) (2023)
De-Chen Lin
Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nature communications 14 (1) (2023)
Hua Zhao, Yulan Cheng, Andrew Kalra, Ke Ma, Yueyuan Zheng, Benjamin Ziman, Caitlin Tressler, Kristine Glunde, Eun Ji Shin, Saowanee Ngamruengphong, Mouen Khashab, Vikesh K Singh, Robert A Anders, Simran Jit, Nicolas Wyhs, Wei Chen, Xu Li, De-Chen Lin, Stephen J Meltzer
Generation and multiomic profiling of a TP53/CDKN2A double-knockout gastroesophageal junction organoid model. Science translational medicine 14 (673) (2022)
Li-Yan Li, Qian Yang, Yan-Yi Jiang, Wei Yang, Yuan Jiang, Xiang Li, Masaharu Hazawa, Bo Zhou, Guo-Wei Huang, Xiu-E Xu, Sigal Gery, Ying Zhang, Ling-Wen Ding, Allen S Ho, Zachary S Zumsteg, Ming-Rong Wang, Melissa Jane Fullwood, Stephen J Freedland, Stephen J Meltzer, Li-Yan Xu, En-Min Li, H Phillip Koeffler, De-Chen Lin
Interplay and cooperation between SREBF1 and master transcription factors regulate lipid metabolism and tumor-promoting pathways in squamous cancer. Nature communications 12 (1) (2021)
Yueyuan Zheng, Guowei Huang, Tiago C Silva, Qian Yang, Yan-Yi Jiang, H Phillip Koeffler, De-Chen Lin, Benjamin P Berman
Publisher Correction: A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes. Nature communications 12 (1) (2021)
Huy Q Dinh, Feng Pan, Geng Wang, Qing-Feng Huang, Claire E Olingy, Zhi-Yong Wu, Shao-Hong Wang, Xin Xu, Xiu-E Xu, Jian-Zhong He, Qian Yang, Sandra Orsulic, Marcela Haro, Li-Yan Li, Guo-Wei Huang, Joshua J Breunig, H Phillip Koeffler, Catherine C Hedrick, Li-Yan Xu, De-Chen Lin, En-Min Li
Integrated single-cell transcriptome analysis reveals heterogeneity of esophageal squamous cell carcinoma microenvironment. Nature communications 12 (1) (2021)
Yueyuan Zheng, Guowei Huang, Tiago C Silva, Qian Yang, Yan-Yi Jiang, H Phillip Koeffler, De-Chen Lin, Benjamin P Berman
A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes. Nature communications 12 (1) (2021)
Jessica Reddy, Marcos A S Fonseca, Rosario I Corona, Robbin Nameki, Felipe Segato Dezem, Isaac A Klein, Heidi Chang, Daniele Chaves-Moreira, Lena K Afeyan, Tathiane Maistro Malta, Xianzhi Lin, Forough Abbasi, Alba Font-Tello, Thais S Sabedot, Paloma Cejas, Norma Rodríguez-Malavé, Ji-Heui Seo, De-Chen Lin, Ursula Matulonis, Beth Y Karlan, Simon A Gayther, Bogdan Pasaniuc, Alexander Gusev, Houtan Noushmehr, Henry W Long, Matthew L Freedman, Ronny Drapkin, Richard A Young, Brian J Abraham, Kate Lawrenson
Predicting master transcription factors from pan-cancer expression data. Science advances 7 (48) (2021)