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Elena Papaleo

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 17

Top Venues

PLoS computational biology

eLife

Briefings in bioinformatics

Journal of chemical information and modeling

University of Copenhagen

Universita degli Studi di Milano-Bicocca (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Copenhagen Jan 1o 2018

Denmark

Associate Professor :: NovoNordisk Center for Protein Research

Education History

Universita degli Studi di Milano-Bicocca Oct 1o 1997 - Jul 15o 2012

Italy

MSC :: Dipartimento di Biotecnologie e Bioscienza

Publications

Valentina Sora, Matteo Tiberti, Ludovica Beltrame, Deniz Dogan, Shahriyar Mahdi Robbani, Joshua Rubin, Elena Papaleo
PyInteraph2 and PyInKnife2 to Analyze Networks in Protein Structural Ensembles. Journal of chemical information and modeling (2023)
Mona Nourbakhsh, Astrid Saksager, Nikola Tom, Xi Steven Chen, Antonio Colaprico, Catharina Olsen, Matteo Tiberti, Elena Papaleo
A workflow to study mechanistic indicators for driver gene prediction with Moonlight. Briefings in bioinformatics (2023)
Kristine Degn, Ludovica Beltrame, Matteo Tiberti, Elena Papaleo
PDBminer to Find and Annotate Protein Structures for Computational Analysis. Journal of chemical information and modeling (2023)
Matteo Tiberti, Thilde Terkelsen, Kristine Degn, Ludovica Beltrame, Tycho Canter Cremers, Isabelle da Piedade, Miriam Di Marco, Emiliano Maiani, Elena Papaleo
MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles. Briefings in bioinformatics 23 (3) (2022)
Veronica Saez-Jimenez, Simone Scrima, Matteo Lambrughi, Elena Papaleo, Valeria Mapelli, Martin K M Engqvist, Lisbeth Olsson
Directed Evolution of ( R )-2-Hydroxyglutarate Dehydrogenase Improves 2-Oxoadipate Reduction by 2 Orders of Magnitude. ACS synthetic biology 11 (8) (2022)
Valentina Sora, Adrian Otamendi Laspiur, Kristine Degn, Matteo Arnaudi, Mattia Utichi, Ludovica Beltrame, Dayana De Menezes, Matteo Orlandi, Ulrik Kristoffer Stoltze, Olga Rigina, Peter Wad Sackett, Karin Wadt, Kjeld Schmiegelow, Matteo Tiberti, Elena Papaleo
RosettaDDGPrediction for high-throughput mutational scans: from stability to binding. Protein science : a publication of the Protein Society (2022)
Valentina Sora, Dionisio Sanchez, Elena Papaleo
Bcl-xL Dynamics under the Lens of Protein Structure Networks. The journal of physical chemistry. B 125 (17) (2021)
Thilde Terkelsen, Maria Pernemalm, Pavel Gromov, Anna-Lise Børresen-Dale, Anders Krogh, Vilde D Haakensen, Janne Lethiö, Elena Papaleo, Irina Gromova
High-throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype-specific serologically relevant biomarkers. Molecular oncology 15 (2) (2021)
Federica Quaglia, Bálint Mészáros, Edoardo Salladini, Andras Hatos, Rita Pancsa, Lucía Beatriz Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E Davey, Radoslav Davidović, László Dobson, Arne Elofsson, Gábor Erdős, Pascale Gaudet, Michelle G Giglio, Juliana Glavina, Javier Iserte, Valentin Iglesias, Zsófia Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino-Buslje, Attila Mészáros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F Nilsson, Marian Novotný, Christos A Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro José Barbosa Pereira, Gabriele Pozzati, Vasilis J Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Eva Schad, Aditi Shenoy, Tamás Szaniszló, Konstantinos D Tsirigos, Nevena Veljkovic, Gustavo Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C E Tosatto, Damiano Piovesan
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic acids research (2021)
Veronica Saez-Jimenez, Željka Sanader Maršić, Matteo Lambrughi, Jae Ho Shin, Robin van Havere, Elena Papaleo, Lisbeth Olsson, Valeria Mapelli
Structure-function investigation of 3-methylaspartate ammonia lyase reveals substrate molecular determinants for the deamination reaction. PloS one 15 (5) (2020)
Thilde Terkelsen, Anders Krogh, Elena Papaleo
CAncer bioMarker Prediction Pipeline (CAMPP)-A standardized framework for the analysis of quantitative biological data. PLoS computational biology 16 (3) (2020)
Thilde Terkelsen, Francesco Russo, Pavel Gromov, Vilde Drageset Haakensen, Søren Brunak, Irina Gromova, Anders Krogh, Elena Papaleo
Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration. Breast cancer research : BCR 22 (1) (2020)
Mohamed Mounir, Marta Lucchetta, Tiago C Silva, Catharina Olsen, Gianluca Bontempi, Xi Chen, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx. PLoS computational biology 15 (3) (2019)
Amanda B Abildgaard, Amelie Stein, Sofie V Nielsen, Katrine Schultz-Knudsen, Elena Papaleo, Amruta Shrikhande, Eva R Hoffmann, Inge Bernstein, Anne-Marie Gerdes, Masanobu Takahashi, Chikashi Ishioka, Kresten Lindorff-Larsen, Rasmus Hartmann-Petersen
Computational and cellular studies reveal structural destabilization and degradation of MLH1 variants in Lynch syndrome. eLife 8 (2019)
Simon Mathis Kønig, Vendela Rissler, Thilde Terkelsen, Matteo Lambrughi, Elena Papaleo
Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level. PLoS computational biology 15 (12) (2019)
Matteo Lambrughi, Luca De Gioia, Francesco Luigi Gervasio, Kresten Lindorff-Larsen, Ruth Nussinov, Chiara Urani, Maurizio Bruschi, Elena Papaleo
DNA-binding protects p53 from interactions with cofactors involved in transcription-independent functions. Nucleic acids research 44 (19) (2016)
Yong Wang, Elena Papaleo, Kresten Lindorff-Larsen
Mapping transiently formed and sparsely populated conformations on a complex energy landscape. eLife 5 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Elena Papaleo