Arne Elofsson

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 52

Top Venues

Nature structural & molecular biology

Bioinformatics (Oxford, England)

PLoS computational biology

Proteins

Stockholms Universitet

Karolinska Institutet (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stockholms Universitet Sep 01 1995

Sweden

Professor :: Biochemisty and Biophysics

Education History

Karolinska Institutet Sep 01 1989 - May 07 1993

Sweden

PHD :: Medical Biophysics

Publications

Ho Yeung Chim, Arne Elofsson
MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2. Bioinformatics (Oxford, England) 40 (6) (2024)
Ho Yeung Chim, Arne Elofsson
MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2. Bioinformatics (Oxford, England) 40 (6) (2024)
Aditi Shenoy, Yogesh Kalakoti, Durai Sundar, Arne Elofsson
M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings. Bioinformatics (Oxford, England) 40 (1) (2024)
Arne Elofsson, Ling Han, Enrica Bianchi, Gavin J Wright, Luca Jovine
Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse. eLife 13 (2024)
Aditi Shenoy, Yogesh Kalakoti, Durai Sundar, Arne Elofsson
M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings. Bioinformatics (Oxford, England) 40 (1) (2024)
Arne Elofsson, Ling Han, Enrica Bianchi, Gavin J Wright, Luca Jovine
Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse. eLife 13 (2024)
Ho Yeung Chim, Arne Elofsson
MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2. Bioinformatics (Oxford, England) 40 (6) (2024)
Ho Yeung Chim, Arne Elofsson
MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2. Bioinformatics (Oxford, England) 40 (6) (2024)
Aditi Shenoy, Yogesh Kalakoti, Durai Sundar, Arne Elofsson
M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings. Bioinformatics (Oxford, England) 40 (1) (2024)
Arne Elofsson, Ling Han, Enrica Bianchi, Gavin J Wright, Luca Jovine
Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse. eLife 13 (2024)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Karin Ernits, Chayan Kumar Saha, Tetiana Brodiazhenko, Bhanu Chouhan, Aditi Shenoy, Jessica A Buttress, Julián J Duque-Pedraza, Veda Bojar, Jose Alberto Nakamoto, Tatsuaki Kurata, Artyom A Egorov, Elena Y Shyrokova, Marcus J O Johansson, Toomas Mets, Aytan Rustamova, Jelisaveta Džigurski, Tanel Tenson, Abel Garcia-Pino, Henrik Strahl, Arne Elofsson, Vasili Hauryliuk, Gemma Catherine Atkinson
The structural basis of hyperpromiscuity in a core combinatorial network of type II toxin-antitoxin and related phage defense systems. Proceedings of the National Academy of Sciences of the United States of America 120 (33) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology (2023)
Mihkel Saluri, Axel Leppert, Genis Valentin Gese, Cagla Sahin, Dilraj Lama, Margit Kaldmäe, Gefei Chen, Arne Elofsson, Timothy M Allison, Marie Arsenian Henriksson, Jan Johansson, David Philip Lane, B Martin Hällberg, Michael Landreh
A "grappling hook" interaction connects self-assembly and chaperone activity of Nucleophosmin 1. PNAS nexus 2 (2) (2023)
Leo Dahl, Ilana B Kotliar, Annika Bendes, Tea Dodig-Crnkovic, Samuel Fromm, Arne Elofsson, Mathias Uhlen, Thomas P Sakmar, Jochen M Schwenk
Multiplexed selectivity screening of anti-GPCR antibodies. Science advances 9 (18) (2023)
Yanlei Kang, Arne Elofsson, Yunliang Jiang, Weihong Huang, Minzhe Yu, Zhong Li
AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network. Bioinformatics (Oxford, England) 39 (2) (2023)
Patrick Bryant, Arne Elofsson
Peptide binder design with inverse folding and protein structure prediction. Communications chemistry 6 (1) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Leo Dahl, Ilana B Kotliar, Annika Bendes, Tea Dodig-Crnkovic, Samuel Fromm, Arne Elofsson, Mathias Uhlen, Thomas P Sakmar, Jochen M Schwenk
Multiplexed selectivity screening of anti-GPCR antibodies. Science advances 9 (18) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Yanlei Kang, Arne Elofsson, Yunliang Jiang, Weihong Huang, Minzhe Yu, Zhong Li
AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network. Bioinformatics (Oxford, England) 39 (2) (2023)
Mihkel Saluri, Axel Leppert, Genis Valentin Gese, Cagla Sahin, Dilraj Lama, Margit Kaldmäe, Gefei Chen, Arne Elofsson, Timothy M Allison, Marie Arsenian Henriksson, Jan Johansson, David Philip Lane, B Martin Hällberg, Michael Landreh
A "grappling hook" interaction connects self-assembly and chaperone activity of Nucleophosmin 1. PNAS nexus 2 (2) (2023)
Leo Dahl, Ilana B Kotliar, Annika Bendes, Tea Dodig-Crnkovic, Samuel Fromm, Arne Elofsson, Mathias Uhlen, Thomas P Sakmar, Jochen M Schwenk
Multiplexed selectivity screening of anti-GPCR antibodies. Science advances 9 (18) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology (2023)
Leo Dahl, Ilana B Kotliar, Annika Bendes, Tea Dodig-Crnkovic, Samuel Fromm, Arne Elofsson, Mathias Uhlen, Thomas P Sakmar, Jochen M Schwenk
Multiplexed selectivity screening of anti-GPCR antibodies. Science advances 9 (18) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Patrick Bryant, Gabriele Pozzati, Wensi Zhu, Aditi Shenoy, Petras Kundrotas, Arne Elofsson
Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search. Nature communications 13 (1) (2022)
Patrick Bryant, Gabriele Pozzati, Arne Elofsson
Author Correction: Improved prediction of protein-protein interactions using AlphaFold2. Nature communications 13 (1) (2022)
Patrick Bryant, Arne Elofsson
The relationship between ageing and changes in the human blood and brain methylomes. NAR genomics and bioinformatics 4 (1) (2022)
Mehmet Akdel, Douglas E V Pires, Eduard Porta Pardo, Jürgen Jänes, Arthur O Zalevsky, Bálint Mészáros, Patrick Bryant, Lydia L Good, Roman A Laskowski, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Petras Kundrotas, Victoria Ruiz Serra, Carlos Henrique Miranda, Alistair S Dunham, David Francis Burke, Neera Borkakoti, Sameer Velankar, Adam Frost, Jérôme Basquin, Kresten Lindorff-Larsen, Alex Bateman, Andrey V Kajava, Alfonso Valencia, Sergey Ovchinnikov, Janani Durairaj, David Benjamin Ascher, Janet M Thornton, Norman E Davey, Amelie Stein, Arne Elofsson, Tristan I Croll, Pedro Beltrao
A structural biology community assessment of AlphaFold2 applications. Nature structural & molecular biology 29 (11) (2022)
Gabriele Pozzati, Petras J Kundrotas, Arne Elofsson
Scoring of protein-protein docking models utilizing predicted interface residues. Proteins 90 (7) (2022)
Patrick Bryant, Gabriele Pozzati, Arne Elofsson
Improved prediction of protein-protein interactions using AlphaFold2. Nature communications 13 (1) (2022)
Zhong Li, Kaiyancheng Jiang, Shengwei Qin, Yijun Zhong, Arne Elofsson
GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction. PLoS computational biology 17 (6) (2021)
Elodie Laine, Stephan Eismann, Arne Elofsson, Sergei Grudinin
Protein sequence-to-structure learning: Is this the end(-to-end revolution)? Proteins 89 (12) (2021)
Federica Quaglia, Bálint Mészáros, Edoardo Salladini, Andras Hatos, Rita Pancsa, Lucía Beatriz Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E Davey, Radoslav Davidović, László Dobson, Arne Elofsson, Gábor Erdős, Pascale Gaudet, Michelle G Giglio, Juliana Glavina, Javier Iserte, Valentin Iglesias, Zsófia Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino-Buslje, Attila Mészáros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F Nilsson, Marian Novotný, Christos A Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro José Barbosa Pereira, Gabriele Pozzati, Vasilis J Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Eva Schad, Aditi Shenoy, Tamás Szaniszló, Konstantinos D Tsirigos, Nevena Veljkovic, Gustavo Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C E Tosatto, Damiano Piovesan
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic acids research (2021)
Claudio Bassot, Arne Elofsson
Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families. PLoS computational biology 17 (4) (2021)
Govindarajan Sudha, Claudio Bassot, John Lamb, Nanjiang Shu, Yan Huang, Arne Elofsson
The evolutionary history of topological variations in the CPA/AT transporters. PLoS computational biology 17 (8) (2021)
Christine Orengo, Sameer Velankar, Shoshana Wodak, Vincent Zoete, Alexandre M J J Bonvin, Arne Elofsson, K Anton Feenstra, Dietland L Gerloff, Thomas Hamelryck, John M Hancock, Manuela Helmer-Citterich, Adam Hospital, Modesto Orozco, Anastassis Perrakis, Matthias Rarey, Claudio Soares, Joel L Sussman, Janet M Thornton, Pierre Tuffery, Gabor Tusnady, Rikkert Wierenga, Tiina Salminen, Bohdan Schneider
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community). F1000Research 9 (2020)
Reyhaneh Naderi, Homa Saadati Mollaei, Arne Elofsson, Saman Hosseini Ashtiani
Using Micro- and Macro-Level Network Metrics Unveils Top Communicative Gene Modules in Psoriasis. Genes 11 (8) (2020)
Matteo Delucchi, Elke Schaper, Oxana Sachenkova, Arne Elofsson, Maria Anisimova
A New Census of Protein Tandem Repeats and Their Relationship with Intrinsic Disorder. Genes 11 (4) (2020)
Arne Elofsson, Berk Hess, Erik Lindahl, Alexey V Onufriev, David van der Spoel, Anders Wallqvist
Ten simple rules on how to create open access and reproducible molecular simulations of biological systems. PLoS computational biology 15 (1) (2019)
Jianlin Cheng, Myong-Ho Choe, Arne Elofsson, Kun-Sop Han, Jie Hou, Ali H A Maghrabi, Liam James McGuffin, David Menéndez-Hurtado, Kliment Olechnovič, Torsten Schwede, Gabriel Studer, Karolis Uziela, Česlovas Venclovas, Björn Wallner
Estimation of model accuracy in CASP13. Proteins 87 (12) (2019)
Jose Juan Almagro Armenteros, Marco Salvatore, Olof Emanuelsson, Ole Winther, Gunnar von Heijne, Arne Elofsson, Henrik Nielsen
Detecting sequence signals in targeting peptides using deep learning. Life science alliance 2 (5) (2019)
Walter Basile, Marco Salvatore, Claudio Bassot, Arne Elofsson
Why do eukaryotic proteins contain more intrinsically disordered regions? PLoS computational biology 15 (7) (2019)
Norman E Davey, M Madan Babu, Martin Blackledge, Alan Bridge, Salvador Capella, Zsuzsanna Dosztanyi, Rachel Drysdale, Richard J Edwards, Arne Elofsson, Isabella C Felli, Toby J Gibson, Aleksandras Gutmanas, John M Hancock, Jen Harrow, Desmond Higgins, Cy M Jeffries, Philippe Le Mercier, Balint Mészáros, Marco Necci, Cedric Notredame, Sandra E Orchard, Christos A Ouzounis, Rita Pancsa, Elena Papaleo, Roberta Pierattelli, Damiano Piovesan, Vasilis J Promponas, Patrick Ruch, Gabriella Rustici, Pedro Romero, Sirarat Sarntivijai, Gary Saunders, Benjamin Schuler, Malvika Sharan, Denis C Shields, Joel L Sussman, Jonathan A Tedds, Peter Tompa, Michael Turewicz, Jiri Vondrasek, Wim F Vranken, Bonnie Ann Wallace, Kanin Wichapong, Silvio C E Tosatto
An intrinsically disordered proteins community for ELIXIR. F1000Research 8 (2019)
Karolis Uziela, David Menéndez Hurtado, Nanjiang Shu, Björn Wallner, Arne Elofsson
Improved protein model quality assessments by changing the target function. Proteins 86 (6) (2018)
Walter Basile, Oxana Sachenkova, Sara Light, Arne Elofsson
High GC content causes orphan proteins to be intrinsically disordered. PLoS computational biology 13 (3) (2017)
Arne Elofsson, Keehyoung Joo, Chen Keasar, Jooyoung Lee, Ali H A Maghrabi, Balachandran Manavalan, Liam James McGuffin, David Ménendez Hurtado, Claudio Mirabello, Robert Pilstål, Tomer Sidi, Karolis Uziela, Björn Wallner
Methods for estimation of model accuracy in CASP12. Proteins (2017)
Sikander Hayat, Chris Sander, Debora S Marks, Arne Elofsson
All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences. Proceedings of the National Academy of Sciences of the United States of America 112 (17) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Arne Elofsson