Fangqing Zhao

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 46

Top Venues

Gut

Nature computational science

National science review

The Journal of experimental medicine

Beijing Institutes of Life Science, Chinese Academy of Sciences

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Beijing Institutes of Life Science, Chinese Academy of Sciences Jan 01 2011

China

Principal Investigator :: Computational Genomics Lab

Publications

Liwen Xiao, Zhenqiang Zuo, Fangqing Zhao
Microbiome in Female Reproductive Health: Implications for Fertility and Assisted Reproductive Technologies. Genomics, proteomics & bioinformatics 22 (1) (2024)
Yuanyuan Zhao, Bing Zhang, Yiming Ma, Mengmeng Guo, Fuqiang Zhao, Jia-Nan Chen, Bingzhi Wang, Hua Jin, Fulai Zhou, Jiawei Guan, Qian Zhao, Qian Liu, Hongying Wang, Fangqing Zhao, Xia Wang
Distinct molecular profiles drive multifaceted characteristics of colorectal cancer metastatic seeds. The Journal of experimental medicine 221 (5) (2024)
Yuanyuan Zhao, Bing Zhang, Yiming Ma, Mengmeng Guo, Fuqiang Zhao, Jia-Nan Chen, Bingzhi Wang, Hua Jin, Fulai Zhou, Jiawei Guan, Qian Zhao, Qian Liu, Hongying Wang, Fangqing Zhao, Xia Wang
Distinct molecular profiles drive multifaceted characteristics of colorectal cancer metastatic seeds. The Journal of experimental medicine 221 (5) (2024)
Yuanyuan Zhao, Bing Zhang, Yiming Ma, Mengmeng Guo, Fuqiang Zhao, Jia-Nan Chen, Bingzhi Wang, Hua Jin, Fulai Zhou, Jiawei Guan, Qian Zhao, Qian Liu, Hongying Wang, Fangqing Zhao, Xia Wang
Distinct molecular profiles drive multifaceted characteristics of colorectal cancer metastatic seeds. The Journal of experimental medicine 221 (5) (2024)
Junjie Zhu, Kun Pang, Beiyu Hu, Ruiqiao He, Ning Wang, Zewen Jiang, Peifeng Ji, Fangqing Zhao
Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view. Nature genetics (2024)
Liwen Xiao, Zhenqiang Zuo, Fangqing Zhao
Microbiome in Female Reproductive Health: Implications for Fertility and Assisted Reproductive Technologies. Genomics, proteomics & bioinformatics 22 (1) (2024)
Liwen Xiao, Zhenqiang Zuo, Fangqing Zhao
Microbiome in Female Reproductive Health: Implications for Fertility and Assisted Reproductive Technologies. Genomics, proteomics & bioinformatics 22 (1) (2024)
Yamao Chen, Shengyu Zhou, Ming Li, Fangqing Zhao, Ji Qi
STEEL enables high-resolution delineation of spatiotemporal transcriptomic data. Briefings in bioinformatics 24 (2) (2023)
Liwen Xiao, Fangqing Zhao
Microbial transmission, colonisation and succession: from pregnancy to infancy. Gut 72 (4) (2023)
Marieke Vromman, Jasper Anckaert, Stefania Bortoluzzi, Alessia Buratin, Chia-Ying Chen, Qinjie Chu, Trees-Juen Chuang, Roozbeh Dehghannasiri, Christoph Dieterich, Xin Dong, Paul Flicek, Enrico Gaffo, Wanjun Gu, Chunjiang He, Steve Hoffmann, Osagie G Izuogu, Michael S Jackson, Tobias Jakobi, Eric C Lai, Justine Nuytens, Julia Salzman, Mauro Santibanez-Koref, Peter F Stadler, Olivier Thas, Eveline Vanden Eynde, Kimberly Verniers, Guoxia Wen, Jakub Orzechowski Westholm, Li Yang, Chu-Yu Ye, Nurten Yigit, Guo-Hua Yuan, Jinyang Zhang, Fangqing Zhao, Jo Vandesompele, Pieter-Jan Volders
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision. Nature methods (2023)
Yamao Chen, Shengyu Zhou, Ming Li, Fangqing Zhao, Ji Qi
STEEL enables high-resolution delineation of spatiotemporal transcriptomic data. Briefings in bioinformatics (2023)
Liwen Xiao, Fangqing Zhao
Microbial transmission, colonisation and succession: from pregnancy to infancy. Gut 72 (4) (2023)
Ling-Ling Chen, Albrecht Bindereif, Irene Bozzoni, Howard Y Chang, A Gregory Matera, Myriam Gorospe, Thomas Birkballe Hansen, Jørgen Kjems, Xu-Kai Ma, Jun Wei Pek, Nikolaus Rajewsky, Julia Salzman, Jeremy E Wilusz, Li Yang, Fangqing Zhao
A guide to naming eukaryotic circular RNAs. Nature cell biology 25 (1) (2023)
Wanying Wu, Fangqing Zhao, Jinyang Zhang
circAtlas 3.0: a gateway to 3 million curated vertebrate circular RNAs based on a standardized nomenclature scheme. Nucleic acids research (2023)
Ling-Ling Chen, Albrecht Bindereif, Irene Bozzoni, Howard Y Chang, A Gregory Matera, Myriam Gorospe, Thomas Birkballe Hansen, Jørgen Kjems, Xu-Kai Ma, Jun Wei Pek, Nikolaus Rajewsky, Julia Salzman, Jeremy E Wilusz, Li Yang, Fangqing Zhao
A guide to naming eukaryotic circular RNAs. Nature cell biology (2023)
Tian Zhou, Liwen Xiao, Zhenqiang Zuo, Fangqing Zhao
MAMI: a comprehensive database of mother-infant microbiome and probiotic resources. Nucleic acids research (2023)
Yamao Chen, Shengyu Zhou, Ming Li, Fangqing Zhao, Ji Qi
STEEL enables high-resolution delineation of spatiotemporal transcriptomic data. Briefings in bioinformatics 24 (2) (2023)
Liwen Xiao, Fangqing Zhao
Microbial transmission, colonisation and succession: from pregnancy to infancy. Gut (2023)
Wenbing Chen, Yupeng Geng, Bing Zhang, Ying Yan, Fangqing Zhao, Miao Miao
STOP or not: genome-wide profiling of reassigned stop codons in ciliates. Molecular biology and evolution (2023)
Ruiqiao He, Junjie Zhu, Peifeng Ji, Fangqing Zhao
SEVtras delineates small extracellular vesicles at droplet resolution from single-cell transcriptomes. Nature methods (2023)
Ling-Ling Chen, Albrecht Bindereif, Irene Bozzoni, Howard Y Chang, A Gregory Matera, Myriam Gorospe, Thomas Birkballe Hansen, Jørgen Kjems, Xu-Kai Ma, Jun Wei Pek, Nikolaus Rajewsky, Julia Salzman, Jeremy E Wilusz, Li Yang, Fangqing Zhao
A guide to naming eukaryotic circular RNAs. Nature cell biology 25 (1) (2023)
Lingling Hou, Jinyang Zhang, Fangqing Zhao
Full-length circular RNA profiling by nanopore sequencing with CIRI-long. Nature protocols (2023)
Ruiqiao He, Pan Li, Jinfeng Wang, Bota Cui, Faming Zhang, Fangqing Zhao
The interplay of gut microbiota between donors and recipients determines the efficacy of fecal microbiota transplantation. Gut microbes 14 (1) (2022)
Liwen Xiao, Fengyi Zhang, Fangqing Zhao
Large-scale microbiome data integration enables robust biomarker identification. Nature computational science 2 (5) (2022)
Jing Yang, Lingling Hou, Jinfeng Wang, Liwen Xiao, Jinyang Zhang, Nanlin Yin, Su Yao, Kun Cheng, Wen Zhang, Zhonghua Shi, Jing Wang, Hai Jiang, Nana Huang, Yanxia You, Mingmei Lin, Ruiyan Shang, Yuan Wei, Yangyu Zhao, Fangqing Zhao
Unfavourable intrauterine environment contributes to abnormal gut microbiome and metabolome in twins. Gut 71 (12) (2022)
Yanan Cao, Lingling Chen, Hua Chen, Yupeng Cun, Xiaofeng Dai, Hongli Du, Feng Gao, Fengbiao Guo, Ya-Long Guo, Pei Hao, Shunmin He, Shunping He, XiongLei He, Zheng Hu, Boon-Peng Hoh, Xin Jin, Qian Jiang, Qinghua Jiang, Asifullah Khan, Hong-Zhi Kong, Jin-Chen Li, Shuai Cheng Li, Ying Li, Qiang Lin, Jianquan Liu, Qi Liu, Jian Lu, Xuemei Lu, Shujin Luo, Qinghua Nie, Zilong Qiu, Tieliu Shi, Xiaofeng Song, Jianzhong Su, Sheng-Ce Tao, Chaolong Wang, Chuan-Chao Wang, Guo-Dong Wang, Ji-Guang Wang, Qi Wu, Shaoyuan Wu, Shuhua Xu, Yang Xu, Wenjun Yang, Zhaohui Yang, Kai Ye, Yuan-Nong Ye, Li Yu, Fangqing Zhao, Yiqiang Zhao, Weiwei Zhai, Dandan Zhang, Liye Zhang, Hou-Feng Zheng, Qi Zhou, Tianqi Zhu, Ya-Ping Zhang
Was Wuhan the early epicenter of the COVID-19 pandemic?-A critique. National science review 10 (4) (2022)
Wanying Wu, Jinyang Zhang, Xiaofei Cao, Zhengyi Cai, Fangqing Zhao
Exploring the cellular landscape of circular RNAs using full-length single-cell RNA sequencing. Nature communications 13 (1) (2022)
Zhanzhan Li, Bing Zhang, Ning Wang, Zhenqiang Zuo, Hong Wei, Fangqing Zhao
A novel peptide protects against diet-induced obesity by suppressing appetite and modulating the gut microbiota. Gut (2022)
Liwen Xiao, Fengyi Zhang, Fangqing Zhao
Large-scale microbiome data integration enables robust biomarker identification. Nature computational science 2 (5) (2022)
Yanan Cao, Lingling Chen, Hua Chen, Yupeng Cun, Xiaofeng Dai, Hongli Du, Feng Gao, Fengbiao Guo, Ya-Long Guo, Pei Hao, Shunmin He, Shunping He, XiongLei He, Zheng Hu, Boon-Peng Hoh, Xin Jin, Qian Jiang, Qinghua Jiang, Asifullah Khan, Hong-Zhi Kong, Jin-Chen Li, Shuai Cheng Li, Ying Li, Qiang Lin, Jianquan Liu, Qi Liu, Jian Lu, Xuemei Lu, Shujin Luo, Qinghua Nie, Zilong Qiu, Tieliu Shi, Xiaofeng Song, Jianzhong Su, Sheng-Ce Tao, Chaolong Wang, Chuan-Chao Wang, Guo-Dong Wang, Ji-Guang Wang, Qi Wu, Shaoyuan Wu, Shuhua Xu, Yang Xu, Wenjun Yang, Zhaohui Yang, Kai Ye, Yuan-Nong Ye, Li Yu, Fangqing Zhao, Yiqiang Zhao, Weiwei Zhai, Dandan Zhang, Liye Zhang, Hou-Feng Zheng, Qi Zhou, Tianqi Zhu, Ya-Ping Zhang
Was Wuhan the early epicenter of the COVID-19 pandemic?-A critique. National science review 10 (4) (2022)
Yanan Cao, Lingling Chen, Hua Chen, Yupeng Cun, Xiaofeng Dai, Hongli Du, Feng Gao, Fengbiao Guo, Ya-Long Guo, Pei Hao, Shunmin He, Shunping He, XiongLei He, Zheng Hu, Boon-Peng Hoh, Xin Jin, Qian Jiang, Qinghua Jiang, Asifullah Khan, Hong-Zhi Kong, Jin-Chen Li, Shuai Cheng Li, Ying Li, Qiang Lin, Jianquan Liu, Qi Liu, Jian Lu, Xuemei Lu, Shujin Luo, Qinghua Nie, Zilong Qiu, Tieliu Shi, Xiaofeng Song, Jianzhong Su, Sheng-Ce Tao, Chaolong Wang, Chuan-Chao Wang, Guo-Dong Wang, Ji-Guang Wang, Qi Wu, Shaoyuan Wu, Shuhua Xu, Yang Xu, Wenjun Yang, Zhaohui Yang, Kai Ye, Yuan-Nong Ye, Li Yu, Fangqing Zhao, Yiqiang Zhao, Weiwei Zhai, Dandan Zhang, Liye Zhang, Hou-Feng Zheng, Qi Zhou, Tianqi Zhu, Ya-Ping Zhang
Was Wuhan the early epicenter of the COVID-19 pandemic?-A critique. National science review 10 (4) (2022)
Shuai Chen, Xiaofei Cao, Jinyang Zhang, Wanying Wu, Bing Zhang, Fangqing Zhao
circVAMP3 Drives CAPRIN1 Phase Separation and Inhibits Hepatocellular Carcinoma by Suppressing c-Myc Translation. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 9 (8) (2022)
Jinfeng Wang, Liwen Xiao, Baichuan Xiao, Bing Zhang, Zhenqiang Zuo, Peifeng Ji, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Maternal and neonatal viromes indicate the risk of offspring's gastrointestinal tract exposure to pathogenic viruses of vaginal origin during delivery. mLife 1 (3) (2022)
Yanan Cao, Lingling Chen, Hua Chen, Yupeng Cun, Xiaofeng Dai, Hongli Du, Feng Gao, Fengbiao Guo, Ya-Long Guo, Pei Hao, Shunmin He, Shunping He, XiongLei He, Zheng Hu, Boon-Peng Hoh, Xin Jin, Qian Jiang, Qinghua Jiang, Asifullah Khan, Hong-Zhi Kong, Jin-Chen Li, Shuai Cheng Li, Ying Li, Qiang Lin, Jianquan Liu, Qi Liu, Jian Lu, Xuemei Lu, Shujin Luo, Qinghua Nie, Zilong Qiu, Tieliu Shi, Xiaofeng Song, Jianzhong Su, Sheng-Ce Tao, Chaolong Wang, Chuan-Chao Wang, Guo-Dong Wang, Ji-Guang Wang, Qi Wu, Shaoyuan Wu, Shuhua Xu, Yang Xu, Wenjun Yang, Zhaohui Yang, Kai Ye, Yuan-Nong Ye, Li Yu, Fangqing Zhao, Yiqiang Zhao, Weiwei Zhai, Dandan Zhang, Liye Zhang, Hou-Feng Zheng, Qi Zhou, Tianqi Zhu, Ya-Ping Zhang
Was Wuhan the early epicenter of the COVID-19 pandemic?-A critique. National science review 10 (4) (2022)
Liwen Xiao, Fengyi Zhang, Fangqing Zhao
Large-scale microbiome data integration enables robust biomarker identification. Nature computational science 2 (5) (2022)
Bing Zhang, Lina Hou, Hongli Qi, Lingling Hou, Tiancheng Zhang, Fangqing Zhao, Miao Miao
An Extremely Streamlined Macronuclear Genome in the Free-Living Protozoan Fabrea salina. Molecular biology and evolution 39 (4) (2022)
Jinfeng Wang, Liwen Xiao, Baichuan Xiao, Bing Zhang, Zhenqiang Zuo, Peifeng Ji, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Maternal and neonatal viromes indicate the risk of offspring's gastrointestinal tract exposure to pathogenic viruses of vaginal origin during delivery. mLife 1 (3) (2022)
You Yu, Bing Zhang, Peifeng Ji, Zhenqiang Zuo, Yongxi Huang, Ning Wang, Shuang-Jiang Liu, Shuang-Jiang Liu, Fangqing Zhao
Changes to gut amino acid transporters and microbiome associated with increased E/I ratio in Chd8 +/- mouse model of ASD-like behavior. Nature communications 13 (1) (2022)
Liwen Xiao, Fengyi Zhang, Fangqing Zhao
Large-scale microbiome data integration enables robust biomarker identification. Nature computational science 2 (5) (2022)
Wenbing Chen, Changling Zuo, Chundi Wang, Tengteng Zhang, Liping Lyu, Yu Qiao, Fangqing Zhao, Miao Miao
The hidden genomic diversity of ciliated protists revealed by single-cell genome sequencing. BMC biology 19 (1) (2021)
Liwen Xiao, Jinfeng Wang, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Deterministic transition of enterotypes shapes the infant gut microbiome at an early age. Genome biology 22 (1) (2021)
Qiuwen He, Lai-Yu Kwok, Xiaoxia Xi, Zhi Zhong, Teng Ma, Haiyan Xu, Haixia Meng, Fangqing Zhao, Heping Zhang
The meconium microbiota shares more features with the amniotic fluid microbiota than the maternal fecal and vaginal microbiota. Gut microbes 12 (1) (2021)
Jinfeng Wang, Zhanzhan Li, Xiuling Ma, Lifeng Du, Zhen Jia, Xue Cui, Liqun Yu, Jing Yang, Liwen Xiao, Bing Zhang, Huimin Fan, Fangqing Zhao
Translocation of vaginal microbiota is involved in impairment and protection of uterine health. Nature communications 12 (1) (2021)
Jinyang Zhang, Lingling Hou, Zhenqiang Zuo, Peifeng Ji, Xiaorong Zhang, Yuanchao Xue, Fangqing Zhao
Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long. Nature biotechnology 39 (7) (2021)
Yi Zheng, Peifeng Ji, Shuai Chen, Lingling Hou, Fangqing Zhao
Reconstruction of full-length circular RNAs enables isoform-level quantification. Genome medicine 11 (1) (2019)
Jinfeng Wang, Zhen Jia, Bing Zhang, Lei Peng, Fangqing Zhao
Tracing the accumulation of in vivo human oral microbiota elucidates microbial community dynamics at the gateway to the GI tract. Gut 69 (7) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Fangqing Zhao