Christoph Dieterich

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 36

Top Topics

Machine Learning

Top Venues

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Nucleic acids research

The EMBO journal

This page only lists publications with an associated author ORCID identifier.

Publications

J Paulo Lorenzo, Linda Molla, Elias Moris Amro, Ignacio L Ibarra, Sandra Ruf, Cedrik Neber, Christos Gkougkousis, Jana Ridani, Poorani Ganesh Subramani, Jonathan Boulais, Dewi Harjanto, Alin Vonica, Javier M Di Noia, Christoph Dieterich, Judith B Zaugg, Fotini Nina Papavasiliou
APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Enio Gjerga, Matthias Dewenter, Thiago Britto-Borges, Johannes Grosso, Frank Stein, Jessica Eschenbach, Mandy Rettel, Johannes Backs, Christoph Dieterich
Transverse aortic constriction multi-omics analysis uncovers pathophysiological cardiac molecular mechanisms. Database : the journal of biological databases and curation 2024 (2024)
J Paulo Lorenzo, Linda Molla, Elias Moris Amro, Ignacio L Ibarra, Sandra Ruf, Cedrik Neber, Christos Gkougkousis, Jana Ridani, Poorani Ganesh Subramani, Jonathan Boulais, Dewi Harjanto, Alin Vonica, Javier M Di Noia, Christoph Dieterich, Judith B Zaugg, Fotini Nina Papavasiliou
APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
J Paulo Lorenzo, Linda Molla, Elias Moris Amro, Ignacio L Ibarra, Sandra Ruf, Cedrik Neber, Christos Gkougkousis, Jana Ridani, Poorani Ganesh Subramani, Jonathan Boulais, Dewi Harjanto, Alin Vonica, Javier M Di Noia, Christoph Dieterich, Judith B Zaugg, Fotini Nina Papavasiliou
APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Adrian Chan, Isabel S Naarmann-de Vries, Carolin P M Scheitl, Claudia Höbartner, Christoph Dieterich
Detecting m 6 A at single-molecular resolution via direct RNA sequencing and realistic training data. Nature communications 15 (1) (2024)
Thiago Britto-Borges, Niels H Gehring, Volker Boehm, Christoph Dieterich
NMDtxDB: Data-driven identification and annotation of human NMD target transcripts. RNA (New York, N.Y.) (2024)
Adrian Chan, Isabel S Naarmann-de Vries, Carolin P M Scheitl, Claudia Höbartner, Christoph Dieterich
Detecting m 6 A at single-molecular resolution via direct RNA sequencing and realistic training data. Nature communications 15 (1) (2024)
J Paulo Lorenzo, Linda Molla, Elias Moris Amro, Ignacio L Ibarra, Sandra Ruf, Cedrik Neber, Christos Gkougkousis, Jana Ridani, Poorani Ganesh Subramani, Jonathan Boulais, Dewi Harjanto, Alin Vonica, Javier M Di Noia, Christoph Dieterich, Judith B Zaugg, Fotini Nina Papavasiliou
APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Adrian Chan, Isabel S Naarmann-de Vries, Carolin P M Scheitl, Claudia Höbartner, Christoph Dieterich
Detecting m 6 A at single-molecular resolution via direct RNA sequencing and realistic training data. Nature communications 15 (1) (2024)
Adrian Chan, Isabel S Naarmann-de Vries, Carolin P M Scheitl, Claudia Höbartner, Christoph Dieterich
Detecting m 6 A at single-molecular resolution via direct RNA sequencing and realistic training data. Nature communications 15 (1) (2024)
J Paulo Lorenzo, Linda Molla, Elias Moris Amro, Ignacio L Ibarra, Sandra Ruf, Cedrik Neber, Christos Gkougkousis, Jana Ridani, Poorani Ganesh Subramani, Jonathan Boulais, Dewi Harjanto, Alin Vonica, Javier M Di Noia, Christoph Dieterich, Judith B Zaugg, Fotini Nina Papavasiliou
APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Enio Gjerga, Matthias Dewenter, Thiago Britto-Borges, Johannes Grosso, Frank Stein, Jessica Eschenbach, Mandy Rettel, Johannes Backs, Christoph Dieterich
Transverse aortic constriction multi-omics analysis uncovers pathophysiological cardiac molecular mechanisms. Database : the journal of biological databases and curation 2024 (2024)
Adrian Chan, Isabel S Naarmann-de Vries, Carolin P M Scheitl, Claudia Höbartner, Christoph Dieterich
Detecting m 6 A at single-molecular resolution via direct RNA sequencing and realistic training data. Nature communications 15 (1) (2024)
Markus Grosch, Laura Schraft, Adrian Chan, Leonie Küchenhoff, Kleopatra Rapti, Anne-Maud Ferreira, Julia Kornienko, Shengdi Li, Michael H Radke, Chiara Krämer, Sandra Clauder-Münster, Emerald Perlas, Johannes Backs, Michael Gotthardt, Christoph Dieterich, Maarten M G van den Hoogenhof, Dirk Grimm, Lars M Steinmetz
Striated muscle-specific base editing enables correction of mutations causing dilated cardiomyopathy. Nature communications 14 (1) (2023)
Marieke Vromman, Jasper Anckaert, Stefania Bortoluzzi, Alessia Buratin, Chia-Ying Chen, Qinjie Chu, Trees-Juen Chuang, Roozbeh Dehghannasiri, Christoph Dieterich, Xin Dong, Paul Flicek, Enrico Gaffo, Wanjun Gu, Chunjiang He, Steve Hoffmann, Osagie G Izuogu, Michael S Jackson, Tobias Jakobi, Eric C Lai, Justine Nuytens, Julia Salzman, Mauro Santibanez-Koref, Peter F Stadler, Olivier Thas, Eveline Vanden Eynde, Kimberly Verniers, Guoxia Wen, Jakub Orzechowski Westholm, Li Yang, Chu-Yu Ye, Nurten Yigit, Guo-Hua Yuan, Jinyang Zhang, Fangqing Zhao, Jo Vandesompele, Pieter-Jan Volders
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision. Nature methods (2023)
Dilara Ayyildiz, Guendalina Bergonzoni, Alan Monziani, Takshashila Tripathi, Jessica Döring, Emanuela Kerschbamer, Francesca Di Leva, Elia Pennati, Luisa Donini, Marina Kovalenko, Jacopo Zasso, Luciano Conti, Vanessa C Wheeler, Christoph Dieterich, Silvano Piazza, Erik Dassi, Marta Biagioli
CAG repeat expansion in the Huntington's disease gene shapes linear and circular RNAs biogenesis. PLoS genetics 19 (10) (2023)
Yu Sun, Michael Piechotta, Isabel Naarmann-de Vries, Christoph Dieterich, Ann E Ehrenhofer-Murray
Detection of queuosine and queuosine precursors in tRNAs by direct RNA sequencing. Nucleic acids research (2023)
Isabel S Naarmann-de Vries, Christiane Zorbas, Amina Lemsara, Michael Piechotta, Felix G M Ernst, Ludivine Wacheul, Denis L J Lafontaine, Christoph Dieterich
Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2. RNA biology 20 (1) (2023)
Katja Hartstock, Nadine A Kueck, Petr Spacek, Anna Ovcharenko, Sabine Hüwel, Nicolas V Cornelissen, Amarnath Bollu, Christoph Dieterich, Andrea Rentmeister
MePMe-seq: antibody-free simultaneous m 6 A and m 5 C mapping in mRNA by metabolic propargyl labeling and sequencing. Nature communications 14 (1) (2023)
Jakob Trendel, Etienne Boileau, Marco Jochem, Christoph Dieterich, Jeroen Krijgsveld
PEPseq quantifies transcriptome-wide changes in protein occupancy and reveals selective translational repression after translational stress. Nucleic acids research (2023)
Reetu Daswani, Carlotta Gilardi, Michael Soutschek, Prakruti Nanda, Kerstin Weiss, Silvia Bicker, Roberto Fiore, Christoph Dieterich, Pierre-Luc Germain, Jochen Winterer, Gerhard Schratt
MicroRNA-138 controls hippocampal interneuron function and short-term memory in mice. eLife 11 (2022)
Thiago Britto-Borges, Annekathrin Ludt, Etienne Boileau, Enio Gjerga, Federico Marini, Christoph Dieterich
Magnetique: an interactive web application to explore transcriptome signatures of heart failure. Journal of translational medicine 20 (1) (2022)
Michael Piechotta, Isabel S Naarmann-de Vries, Qi Wang, Janine Altmüller, Christoph Dieterich
RNA modification mapping with JACUSA2. Genome biology 23 (1) (2022)
Damaris Wallmeroth, Jan-Wilm Lackmann, Sabrina Kueckelmann, Janine Altmüller, Christoph Dieterich, Volker Boehm, Niels H Gehring
Human UPF3A and UPF3B enable fault-tolerant activation of nonsense-mediated mRNA decay. The EMBO journal 41 (10) (2022)
Lena P Schlautmann, Jan-Wilm Lackmann, Janine Altmüller, Christoph Dieterich, Volker Boehm, Niels H Gehring
Exon junction complex-associated multi-adapter RNPS1 nucleates splicing regulatory complexes to maintain transcriptome surveillance. Nucleic acids research 50 (10) (2022)
Rixing Lin, Juan Pablo Lopez, Cristiana Cruceanu, Caroline Pierotti, Laura M Fiori, Alessio Squassina, Caterina Chillotti, Christoph Dieterich, Nikolaos Mellios, Gustavo Turecki
Circular RNA circCCNT2 is upregulated in the anterior cingulate cortex of individuals with bipolar disorder. Translational psychiatry 11 (1) (2021)
Agnieszka A Górska, Clara Sandmann, Eva Riechert, Christoph Hofmann, Ellen Malovrh, Eshita Varma, Vivien Kmietczyk, Julie Ölschläger, Lonny Jürgensen, Verena Kamuf-Schenk, Claudia Stroh, Jennifer Furkel, Mathias H Konstandin, Carsten Sticht, Etienne Boileau, Christoph Dieterich, Norbert Frey, Hugo A Katus, Shirin Doroudgar, Mirko Völkers
Muscle-specific Cand2 is translationally upregulated by mTORC1 and promotes adverse cardiac remodeling. EMBO reports 22 (12) (2021)
David Colameo, Marek Rajman, Michael Soutschek, Silvia Bicker, Lukas von Ziegler, Johannes Bohacek, Jochen Winterer, Pierre-Luc Germain, Christoph Dieterich, Gerhard Schratt
Pervasive compartment-specific regulation of gene expression during homeostatic synaptic scaling. EMBO reports 22 (10) (2021)
Michael H Radke, Victor Badillo-Lisakowski, Thiago Britto-Borges, Dieter A Kubli, René Jüttner, Pragati Parakkat, Jacobo Lopez Carballo, Judith Hüttemeister, Martin Liss, Arne Hansen, Christoph Dieterich, Adam E Mullick, Michael Gotthardt
Therapeutic inhibition of RBM20 improves diastolic function in a murine heart failure model and human engineered heart tissue. Science translational medicine 13 (622) (2021)
Nadine Körtel, Cornelia Rücklé, You Zhou, Anke Busch, Peter Hoch-Kraft, F X Reymond Sutandy, Jacob Haase, Mihika Pradhan, Michael Musheev, Dirk Ostareck, Antje Ostareck-Lederer, Christoph Dieterich, Stefan Hüttelmaier, Christof Niehrs, Oliver Rausch, Dan Dominissini, Julian König, Kathi Zarnack
Deep and accurate detection of m6A RNA modifications using miCLIP2 and m6Aboost machine learning. Nucleic acids research 49 (16) (2021)
Qi Wang, Sven Boenigk, Volker Boehm, Niels H Gehring, Janine Altmueller, Christoph Dieterich
Single cell transcriptome sequencing on the Nanopore platform with ScNapBar. RNA (New York, N.Y.) (2021)
Lina Worpenberg, Chiara Paolantoni, Sara Longhi, Miriam M Mulorz, Tina Lence, Hans-Hermann Wessels, Erik Dassi, Giuseppe Aiello, F X Reymond Sutandy, Marion Scheibe, Raghu R Edupuganti, Anke Busch, Martin M Möckel, Michiel Vermeulen, Falk Butter, Julian König, Michela Notarangelo, Uwe Ohler, Christoph Dieterich, Alessandro Quattrone, Alessia Soldano, Jean-Yves Roignant
Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila. The EMBO journal 40 (4) (2021)
Utkarsh Kapoor, Konstantin Licht, Fabian Amman, Tobias Jakobi, David Martin, Christoph Dieterich, Michael F Jantsch
ADAR-deficiency perturbs the global splicing landscape in mouse tissues. Genome research 30 (8) (2020)
Alexey Uvarovskii, Isabel S Naarmann-de Vries, Christoph Dieterich
On the optimal design of metabolic RNA labeling experiments. PLoS computational biology 15 (8) (2019)
Etienne Boileau, Christoph Dieterich
RNA Modification Level Estimation with pulseR. Genes 9 (12) (2018)
Michael Piechotta, Emanuel Wyler, Uwe Ohler, Markus Landthaler, Christoph Dieterich
JACUSA: site-specific identification of RNA editing events from replicate sequencing data. BMC bioinformatics 18 (1) (2017)