Frederik Otzen Bagger (Frederik O Bagger)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 23

Top Venues

International journal of molecular sciences

BMC genomics

JCO precision oncology

Nucleic acids research

University of Copenhagen (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Copenhagen Oct 01 2011 - Feb 01 2015

Denmark

PHD :: Bioinformatics Centre, Section for Computational and RNA biology

Rigshospitalet Oct 01 2011 - Feb 01 2015

Denmark

PHD :: Finsen Laboratory

University of Copenhagen, Biotech Research and Innovation Centre Oct 01 2011

Denmark

PHD :: Finsen Laboratory

Technical University of Denmark, Center for Biological Sequence Analysis Sep 01 2008 - Oct 01 2011

Denmark

MSC :: Systems Biology

Technical University of Denmark Sep 01 2004 - Aug 27 2008

Denmark

BSC

Publications

Kia Hee Schultz Dungu, Emma Louise Malchau Carlsen, Jonathan Peter Glenthøj, Lisbeth Samsø Schmidt, Inger Merete Jørgensen, Dina Cortes, Anja Poulsen, Nadja Hawwa Vissing, Frederik Otzen Bagger, Ulrikka Nygaard
Host RNA Expression Signatures in Young Infants with Urinary Tract Infection: A Prospective Study. International journal of molecular sciences 25 (9) (2024)
Lea Milling Korsholm, Maj Kjeldsen, Lorenzo Perino, Luca Mariani, Gitte-Bettina Nyvang, Elisabeth Kristensen, Frederik Otzen Bagger, Mansoor Raza Mirza, Maria Rossing
Combining Homologous Recombination-Deficient Testing and Functional RAD51 Analysis Enhances the Prediction of Poly(ADP-Ribose) Polymerase Inhibitor Sensitivity. JCO precision oncology 8 (2024)
Yue He, Kristina B V Døssing, Maria Rossing, Frederik Otzen Bagger, Andreas Kjaer
uPAR (PLAUR) Marks Two Intra-Tumoral Subtypes of Glioblastoma: Insights from Single-Cell RNA Sequencing. International journal of molecular sciences 25 (4) (2024)
Yue He, Kristina B V Døssing, Maria Rossing, Frederik Otzen Bagger, Andreas Kjaer
uPAR (PLAUR) Marks Two Intra-Tumoral Subtypes of Glioblastoma: Insights from Single-Cell RNA Sequencing. International journal of molecular sciences 25 (4) (2024)
Dylan Scott Lykke Harwood, Vilde Pedersen, Nicolai Schou Bager, Ane Yde Schmidt, Tobias Overlund Stannius, Aušrinė Areškevičiūtė, Knud Josefsen, Dorte Schou Nørøxe, David Scheie, Hannah Rostalski, Maya Jeje Schuang Lü, Alessio Locallo, Ulrik N Lassen, Frederik Otzen Bagger, Joachim Weischenfeldt, Dieter Henrik Heiland, Kristoffer Vitting-Seerup, Signe Regner Michaelsen, Bjarne Winther Kristensen
Glioblastoma cells increase expression of notch signaling and synaptic genes within infiltrated brain tissue. Nature communications 15 (1) (2024)
Yue He, Kristina B V Døssing, Maria Rossing, Frederik Otzen Bagger, Andreas Kjaer
uPAR (PLAUR) Marks Two Intra-Tumoral Subtypes of Glioblastoma: Insights from Single-Cell RNA Sequencing. International journal of molecular sciences 25 (4) (2024)
Kia Hee Schultz Dungu, Emma Louise Malchau Carlsen, Jonathan Peter Glenthøj, Lisbeth Samsø Schmidt, Inger Merete Jørgensen, Dina Cortes, Anja Poulsen, Nadja Hawwa Vissing, Frederik Otzen Bagger, Ulrikka Nygaard
Host RNA Expression Signatures in Young Infants with Urinary Tract Infection: A Prospective Study. International journal of molecular sciences 25 (9) (2024)
Yue He, Kristina B V Døssing, Maria Rossing, Frederik Otzen Bagger, Andreas Kjaer
uPAR (PLAUR) Marks Two Intra-Tumoral Subtypes of Glioblastoma: Insights from Single-Cell RNA Sequencing. International journal of molecular sciences 25 (4) (2024)
Lea Milling Korsholm, Maj Kjeldsen, Lorenzo Perino, Luca Mariani, Gitte-Bettina Nyvang, Elisabeth Kristensen, Frederik Otzen Bagger, Mansoor Raza Mirza, Maria Rossing
Combining Homologous Recombination-Deficient Testing and Functional RAD51 Analysis Enhances the Prediction of Poly(ADP-Ribose) Polymerase Inhibitor Sensitivity. JCO precision oncology 8 (2024)
Lea Milling Korsholm, Maj Kjeldsen, Lorenzo Perino, Luca Mariani, Gitte-Bettina Nyvang, Elisabeth Kristensen, Frederik Otzen Bagger, Mansoor Raza Mirza, Maria Rossing
Combining Homologous Recombination-Deficient Testing and Functional RAD51 Analysis Enhances the Prediction of Poly(ADP-Ribose) Polymerase Inhibitor Sensitivity. JCO precision oncology 8 (2024)
Victoria Probst, Lotte Møller Smedegaard, Arman Simonyan, Yuliu Guo, Olga Østrup, Kia Hee Schultz Dungu, Nadja Hawwa Vissing, Ulrikka Nygaard, Frederik Otzen Bagger
A Protocol for Low-Input RNA-Sequencing of Patients with Febrile Neutropenia Captures Relevant Immunological Information. International journal of molecular sciences 24 (12) (2023)
Magnús H Gíslason, Gül Sude Demircan, Marek Prachar, Benjamin Furtwängler, Juerg Schwaller, Erwin M Schoof, Bo Torben Porse, Nicolas Rapin, Frederik Otzen Bagger
BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis. Nucleic acids research (2023)
Victoria Probst, Lotte Møller Smedegaard, Arman Simonyan, Yuliu Guo, Olga Østrup, Kia Hee Schultz Dungu, Nadja Hawwa Vissing, Ulrikka Nygaard, Frederik Otzen Bagger
A Protocol for Low-Input RNA-Sequencing of Patients with Febrile Neutropenia Captures Relevant Immunological Information. International journal of molecular sciences 24 (12) (2023)
Victoria Probst, Lotte Møller Smedegaard, Arman Simonyan, Yuliu Guo, Olga Østrup, Kia Hee Schultz Dungu, Nadja Hawwa Vissing, Ulrikka Nygaard, Frederik Otzen Bagger
A Protocol for Low-Input RNA-Sequencing of Patients with Febrile Neutropenia Captures Relevant Immunological Information. International journal of molecular sciences 24 (12) (2023)
Victoria Probst, Arman Simonyan, Felix Pacheco, Yuliu Guo, Finn Cilius Nielsen, Frederik Otzen Bagger
Benchmarking full-length transcript single cell mRNA sequencing protocols. BMC genomics 23 (1) (2022)
Victoria Probst, Arman Simonyan, Felix Pacheco, Yuliu Guo, Finn Cilius Nielsen, Frederik Otzen Bagger
Benchmarking full-length transcript single cell mRNA sequencing protocols. BMC genomics 23 (1) (2022)
Victoria Probst, Arman Simonyan, Felix Pacheco, Yuliu Guo, Finn Cilius Nielsen, Frederik Otzen Bagger
Benchmarking full-length transcript single cell mRNA sequencing protocols. BMC genomics 23 (1) (2022)
Anne Meldgaard Hansen, Ying Ge, Mikkel Bruhn Schuster, Sachin Pundhir, Janus Schou Jakobsen, Adrija Kalvisa, Marta Cecylia Tapia, Sandra L Gordon, Francesca Ambri, Frederik Otzen Bagger, Deo Pandey, Kristian Helin, Bo Torben Porse
H3K9 dimethylation safeguards cancer cells against activation of the interferon pathway. Science advances 8 (11) (2022)
Victoria Probst, Arman Simonyan, Felix Pacheco, Yuliu Guo, Finn Cilius Nielsen, Frederik Otzen Bagger
Benchmarking full-length transcript single cell mRNA sequencing protocols. BMC genomics 23 (1) (2022)
Julie Sparholt Walbech, Savvas Kinalis, Ole Winther, Finn Cilius Nielsen, Frederik Otzen Bagger
Interpretable Autoencoders Trained on Single Cell Sequencing Data Can Transfer Directly to Data from Unseen Tissues. Cells 11 (1) (2021)
Migle Gabrielaite, Mathias Husted Torp, Malthe Sebro Rasmussen, Sergio Andreu-Sánchez, Filipe Garrett Vieira, Christina Bligaard Pedersen, Savvas Kinalis, Majbritt Busk Madsen, Miyako Kodama, Gül Sude Demircan, Arman Simonyan, Christina Westmose Yde, Lars Rønn Olsen, Rasmus Lykke Marvig, Olga Østrup, Maria Rossing, Finn Cilius Nielsen, Ole Winther, Frederik Otzen Bagger
A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data. Cancers 13 (24) (2021)
Savvas Kinalis, Finn Cilius Nielsen, Ole Winther, Frederik Otzen Bagger
Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data. BMC bioinformatics 20 (1) (2019)
Evangelia Loizou, Ana Banito, Geulah Livshits, Yu-Jui Ho, Richard P Koche, Francisco J Sánchez-Rivera, Allison Mayle, Chi-Chao Chen, Savvas Kinalis, Frederik Otzen Bagger, Edward R Kastenhuber, Benjamin H Durham, Scott W Lowe
A Gain-of-Function p53-Mutant Oncogene Promotes Cell Fate Plasticity and Myeloid Leukemia through the Pluripotency Factor FOXH1. Cancer discovery 9 (7) (2019)
Frederik Otzen Bagger, Damir Sasivarevic, Sina Hadi Sohi, Linea Gøricke Laursen, Sachin Pundhir, Casper Kaae Sønderby, Ole Winther, Nicolas Rapin, Bo T Porse
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis. Nucleic acids research 44 (D1) (2015)

Frederik Otzen Bagger.css-eqlu8i{font-size:small;padding-left:4px;} (Frederik O Bagger)

Publication Activity (10 Years)

Top Topics

Top Venues

Frederik Otzen Bagger (Frederik O Bagger)