Matthew T Weirauch (Matthew Weirauch)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 74

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Genes and immunity

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Dai Dai, Shuangshuang Gu, Xiaxia Han, Huihua Ding, Yang Jiang, Xiao-Ou Zhang, Chao Yao, Soonmin Hong, Jinsong Zhang, Yiwei Shen, Guojun Hou, Bo Qu, Haibo Zhou, Yuting Qin, Yuke He, Jianyang Ma, Zhihua Yin, Zhizhong Ye, Jie Qian, Qian Jiang, Lihua Wu, Qiang Guo, Sheng Chen, Chuan-Xin Huang, Leah C Kottyan, Matthew T Weirauch, Carola G Vinuesa, Nan Shen
The transcription factor ZEB2 drives the formation of age-associated B cells. Science (New York, N.Y.) 383 (6681) (2024)
Taehyeung Kim, Marta Martínez-Bonet, Qiang Wang, Nicolaj S Hackert, Jeffrey A Sparks, Yuriy Baglaenko, Byunghee Koh, Roxane Darbousset, Raquel Laza-Briviesca, Xiaoting Chen, Vitor R C Aguiar, Darren J Chiu, Harm-Jan Westra, Maria Gutierrez-Arcelus, Matthew T Weirauch, Soumya Raychaudhuri, Deepak A Rao, Peter A Nigrovic
Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development. Nature communications 15 (1) (2024)
Guangyuan Li, Shweta Mahajan, Siyuan Ma, Erin D Jeffery, Xuan Zhang, Anukana Bhattacharjee, Meenakshi Venkatasubramanian, Matthew T Weirauch, Emily R Miraldi, H Leighton Grimes, Gloria M Sheynkman, Tamara Tilburgs, Nathan Salomonis
Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy. Science translational medicine 16 (730) (2024)
Joseph A Wayman, Zi Yang, Elizabeth Angerman, Erin Bonkowski, Ingrid Jurickova, Xiaoting Chen, Anthony T Bejjani, Lois Parks, Sreeja Parameswaran, Alexander G Miethke, Kelli L VanDussen, Jasbir Dhaliwal, Matthew T Weirauch, Leah C Kottyan, Lee A Denson, Emily R Miraldi
Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease risk. bioRxiv : the preprint server for biology (2024)
Khund Sayeed, Sreeja Parameswaran, Matthew J Beucler, Lee E Edsall, Andrew VonHandorf, Audrey Crowther, Omer A Donmez, Matthew R Hass, Scott Richards, Carmy R Forney, Jay Wright, Merrin Ml Leong, Laura A Murray-Nerger, Benjamin E Gewurz, Kenneth M Kaufman, John B Harley, Bo Zhao, William E Miller, Leah C Kottyan, Matthew T Weirauch
Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity. bioRxiv : the preprint server for biology (2024)
Khund Sayeed, Sreeja Parameswaran, Matthew J Beucler, Lee E Edsall, Andrew VonHandorf, Audrey Crowther, Omer Donmez, Matthew R Hass, Scott Richards, Carmy Forney, Jay Wright, Merrin Man Long Leong, Laura A Murray-Nerger, Ben E Gewurz, Kenneth M Kaufman, John B Harley, Bo Zhao, William E Miller, Leah C Kottyan, Matthew T Weirauch
Human cytomegalovirus extensively re-organizes the human genome, diminishing TEAD1 transcription factor activity. bioRxiv : the preprint server for biology (2024)
Guangyuan Li, Shweta Mahajan, Siyuan Ma, Erin D Jeffery, Xuan Zhang, Anukana Bhattacharjee, Meenakshi Venkatasubramanian, Matthew T Weirauch, Emily R Miraldi, H Leighton Grimes, Gloria M Sheynkman, Tamara Tilburgs, Nathan Salomonis
Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy. Science translational medicine 16 (730) (2024)
Joseph A Wayman, Zi Yang, Elizabeth Angerman, Erin Bonkowski, Ingrid Jurickova, Xiaoting Chen, Anthony T Bejjani, Lois Parks, Sreeja Parameswaran, Alexander G Miethke, Kelli L VanDussen, Jasbir Dhaliwal, Matthew T Weirauch, Leah C Kottyan, Lee A Denson, Emily R Miraldi
Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease risk. bioRxiv : the preprint server for biology (2024)
Yosuke Yoneyama, Ran-Ran Zhang, Masaki Kimura, Yuqi Cai, Mike Adam, Sreeja Parameswaran, Hideki Masaki, Naoaki Mizuno, Joydeep Bhadury, So Maezawa, Hiroshi Ochiai, Hiromitsu Nakauchi, S Steven Potter, Matthew T Weirauch, Takanori Takebe
Inter-cellular mRNA Transfer Alters Human Pluripotent Stem Cell State. bioRxiv : the preprint server for biology (2024)
Taehyeung Kim, Marta Martínez-Bonet, Qiang Wang, Nicolaj S Hackert, Jeffrey A Sparks, Yuriy Baglaenko, Byunghee Koh, Roxane Darbousset, Raquel Laza-Briviesca, Xiaoting Chen, Vitor R C Aguiar, Darren J Chiu, Harm-Jan Westra, Maria Gutierrez-Arcelus, Matthew T Weirauch, Soumya Raychaudhuri, Deepak A Rao, Peter A Nigrovic
Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development. Nature communications 15 (1) (2024)
Taehyeung Kim, Marta Martínez-Bonet, Qiang Wang, Nicolaj S Hackert, Jeffrey A Sparks, Yuriy Baglaenko, Byunghee Koh, Roxane Darbousset, Raquel Laza-Briviesca, Xiaoting Chen, Vitor R C Aguiar, Darren J Chiu, Harm-Jan Westra, Maria Gutierrez-Arcelus, Matthew T Weirauch, Soumya Raychaudhuri, Deepak A Rao, Peter A Nigrovic
Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development. Nature communications 15 (1) (2024)
Khund Sayeed, Sreeja Parameswaran, Matthew J Beucler, Lee E Edsall, Andrew VonHandorf, Audrey Crowther, Omer Donmez, Matthew R Hass, Scott Richards, Carmy Forney, Jay Wright, Merrin Man Long Leong, Laura A Murray-Nerger, Ben E Gewurz, Kenneth M Kaufman, John B Harley, Bo Zhao, William E Miller, Leah C Kottyan, Matthew T Weirauch
Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity. bioRxiv : the preprint server for biology (2024)
Joseph A Wayman, Zi Yang, Elizabeth Angerman, Erin Bonkowski, Ingrid Jurickova, Xiaoting Chen, Anthony T Bejjani, Lois Parks, Sreeja Parameswaran, Alexander G Miethke, Kelli L VanDussen, Jasbir Dhaliwal, Matthew T Weirauch, Leah C Kottyan, Lee A Denson, Emily R Miraldi
Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease risk. bioRxiv : the preprint server for biology (2024)
Yosuke Yoneyama, Ran-Ran Zhang, Masaki Kimura, Yuqi Cai, Mike Adam, Sreeja Parameswaran, Hideki Masaki, Naoaki Mizuno, Joydeep Bhadury, So Maezawa, Hiroshi Ochiai, Hiromitsu Nakauchi, S Steven Potter, Matthew T Weirauch, Takanori Takebe
Inter-cellular mRNA Transfer Alters Human Pluripotent Stem Cell State. bioRxiv : the preprint server for biology (2024)
Dai Dai, Shuangshuang Gu, Xiaxia Han, Huihua Ding, Yang Jiang, Xiao-Ou Zhang, Chao Yao, Soonmin Hong, Jinsong Zhang, Yiwei Shen, Guojun Hou, Bo Qu, Haibo Zhou, Yuting Qin, Yuke He, Jianyang Ma, Zhihua Yin, Zhizhong Ye, Jie Qian, Qian Jiang, Lihua Wu, Qiang Guo, Sheng Chen, Chuan-Xin Huang, Leah C Kottyan, Matthew T Weirauch, Carola G Vinuesa, Nan Shen
The transcription factor ZEB2 drives the formation of age-associated B cells. Science (New York, N.Y.) 383 (6681) (2024)
Khund Sayeed, Sreeja Parameswaran, Matthew J Beucler, Lee E Edsall, Andrew VonHandorf, Audrey Crowther, Omer Donmez, Matthew R Hass, Scott Richards, Carmy Forney, Jay Wright, Merrin Man Long Leong, Laura A Murray-Nerger, Ben E Gewurz, Kenneth M Kaufman, John B Harley, Bo Zhao, William E Miller, Leah C Kottyan, Matthew T Weirauch
Human cytomegalovirus extensively re-organizes the human genome, diminishing TEAD1 transcription factor activity. bioRxiv : the preprint server for biology (2024)
Qiang Wang, Taehyeung Kim, Marta Martínez-Bonet, Vitor R C Aguiar, Sangwan Sim, Jing Cui, Jeffrey A Sparks, Xiaoting Chen, Marc Todd, Brian Wauford, Miranda C Marion, Carl D Langefeld, Matthew T Weirauch, Maria Gutierrez-Arcelus, Peter A Nigrovic
High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus. Nature communications 15 (1) (2024)
Dai Dai, Shuangshuang Gu, Xiaxia Han, Huihua Ding, Yang Jiang, Xiao-Ou Zhang, Chao Yao, Soonmin Hong, Jinsong Zhang, Yiwei Shen, Guojun Hou, Bo Qu, Haibo Zhou, Yuting Qin, Yuke He, Jianyang Ma, Zhihua Yin, Zhizhong Ye, Jie Qian, Qian Jiang, Lihua Wu, Qiang Guo, Sheng Chen, Chuan-Xin Huang, Leah C Kottyan, Matthew T Weirauch, Carola G Vinuesa, Nan Shen
The transcription factor ZEB2 drives the formation of age-associated B cells. Science (New York, N.Y.) 383 (6681) (2024)
Dai Dai, Shuangshuang Gu, Xiaxia Han, Huihua Ding, Yang Jiang, Xiao-Ou Zhang, Chao Yao, Soonmin Hong, Jinsong Zhang, Yiwei Shen, Guojun Hou, Bo Qu, Haibo Zhou, Yuting Qin, Yuke He, Jianyang Ma, Zhihua Yin, Zhizhong Ye, Jie Qian, Qian Jiang, Lihua Wu, Qiang Guo, Sheng Chen, Chuan-Xin Huang, Leah C Kottyan, Matthew T Weirauch, Carola G Vinuesa, Nan Shen
The transcription factor ZEB2 drives the formation of age-associated B cells. Science (New York, N.Y.) 383 (6681) (2024)
Qiang Wang, Taehyeung Kim, Marta Martínez-Bonet, Vitor R C Aguiar, Sangwan Sim, Jing Cui, Jeffrey A Sparks, Xiaoting Chen, Marc Todd, Brian Wauford, Miranda C Marion, Carl D Langefeld, Matthew T Weirauch, Maria Gutierrez-Arcelus, Peter A Nigrovic
High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus. Nature communications 15 (1) (2024)
Khund Sayeed, Sreeja Parameswaran, Matthew J Beucler, Lee E Edsall, Andrew VonHandorf, Audrey Crowther, Omer A Donmez, Matthew R Hass, Scott Richards, Carmy R Forney, Jay Wright, Merrin Ml Leong, Laura A Murray-Nerger, Benjamin E Gewurz, Kenneth M Kaufman, John B Harley, Bo Zhao, William E Miller, Leah C Kottyan, Matthew T Weirauch
Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity. bioRxiv : the preprint server for biology (2024)
Dai Dai, Shuangshuang Gu, Xiaxia Han, Huihua Ding, Yang Jiang, Xiao-Ou Zhang, Chao Yao, Soonmin Hong, Jinsong Zhang, Yiwei Shen, Guojun Hou, Bo Qu, Haibo Zhou, Yuting Qin, Yuke He, Jianyang Ma, Zhihua Yin, Zhizhong Ye, Jie Qian, Qian Jiang, Lihua Wu, Qiang Guo, Sheng Chen, Chuan-Xin Huang, Leah C Kottyan, Matthew T Weirauch, Carola G Vinuesa, Nan Shen
The transcription factor ZEB2 drives the formation of age-associated B cells. Science (New York, N.Y.) 383 (6681) (2024)
Khund Sayeed, Sreeja Parameswaran, Matthew J Beucler, Lee E Edsall, Andrew VonHandorf, Audrey Crowther, Omer Donmez, Matthew R Hass, Scott Richards, Carmy Forney, Jay Wright, Merrin Man Long Leong, Laura A Murray-Nerger, Ben E Gewurz, Kenneth M Kaufman, John B Harley, Bo Zhao, William E Miller, Leah C Kottyan, Matthew T Weirauch
Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity. bioRxiv : the preprint server for biology (2024)
Khund Sayeed, Sreeja Parameswaran, Matthew J Beucler, Lee E Edsall, Andrew VonHandorf, Audrey Crowther, Omer Donmez, Matthew R Hass, Scott Richards, Carmy Forney, Jay Wright, Merrin Man Long Leong, Laura A Murray-Nerger, Ben E Gewurz, Kenneth M Kaufman, John B Harley, Bo Zhao, William E Miller, Leah C Kottyan, Matthew T Weirauch
Human cytomegalovirus extensively re-organizes the human genome, diminishing TEAD1 transcription factor activity. bioRxiv : the preprint server for biology (2024)
Qiang Wang, Taehyeung Kim, Marta Martínez-Bonet, Vitor R C Aguiar, Sangwan Sim, Jing Cui, Jeffrey A Sparks, Xiaoting Chen, Marc Todd, Brian Wauford, Miranda C Marion, Carl D Langefeld, Matthew T Weirauch, Maria Gutierrez-Arcelus, Peter A Nigrovic
High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus. Nature communications 15 (1) (2024)
Taehyeung Kim, Marta Martínez-Bonet, Qiang Wang, Nicolaj S Hackert, Jeffrey A Sparks, Yuriy Baglaenko, Byunghee Koh, Roxane Darbousset, Raquel Laza-Briviesca, Xiaoting Chen, Vitor R C Aguiar, Darren J Chiu, Harm-Jan Westra, Maria Gutierrez-Arcelus, Matthew T Weirauch, Soumya Raychaudhuri, Deepak A Rao, Peter A Nigrovic
Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development. Nature communications 15 (1) (2024)
Dai Dai, Shuangshuang Gu, Xiaxia Han, Huihua Ding, Yang Jiang, Xiao-Ou Zhang, Chao Yao, Soonmin Hong, Jinsong Zhang, Yiwei Shen, Guojun Hou, Bo Qu, Haibo Zhou, Yuting Qin, Yuke He, Jianyang Ma, Zhihua Yin, Zhizhong Ye, Jie Qian, Qian Jiang, Lihua Wu, Qiang Guo, Sheng Chen, Chuan-Xin Huang, Leah C Kottyan, Matthew T Weirauch, Carola G Vinuesa, Nan Shen
The transcription factor ZEB2 drives the formation of age-associated B cells. Science (New York, N.Y.) 383 (6681) (2024)
Khund Sayeed, Sreeja Parameswaran, Matthew J Beucler, Lee E Edsall, Andrew VonHandorf, Audrey Crowther, Omer Donmez, Matthew R Hass, Scott Richards, Carmy Forney, Jay Wright, Merrin Man Long Leong, Laura A Murray-Nerger, Ben E Gewurz, Kenneth M Kaufman, John B Harley, Bo Zhao, William E Miller, Leah C Kottyan, Matthew T Weirauch
Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity. bioRxiv : the preprint server for biology (2024)
Qiang Wang, Taehyeung Kim, Marta Martínez-Bonet, Sangwan Sim, Vitor Aguiar, Jing Cui, Jeffrey A Sparks, Xiaoting Chen, Marc Todd, Brian Wauford, Matthew T Weirauch, Maria Gutierrez-Arcelus, Peter A Nigrovic
High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus. bioRxiv : the preprint server for biology (2023)
Chong Wang, Xiang Liu, Jun Liang, Yohei Narita, Weiyue Ding, Difei Li, Luyao Zhang, Hongbo Wang, Merrin Man Long Leong, Isabella Hou, Catherine Gerdt, Chang Jiang, Qian Zhong, Zhonghui Tang, Carmy Forney, Leah C Kottyan, Matthew T Weirauch, Benjamin E Gewurz, Mu-Sheng Zeng, Sizun J Jiang, Mingxiang Teng, Bo Zhao
A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth. Nature communications 14 (1) (2023)
Michael Lape, Daniel Schnell, Sreeja Parameswaran, Kevin Ernst, Nathan Salomonis, Lisa J Martin, Brett M Harnett, Leah C Kottyan, Matthew T Weirauch
After the Infection: A Survey of Pathogens and Non-communicable Human Disease. medRxiv : the preprint server for health sciences (2023)
Krzysztof Kiryluk, Elena Sanchez, Xu-Jie Zhou, Francesca Zanoni, Lili Liu, Nikol Mladkova, Atlas Khan, Maddalena Marasa, Junying Zhang, Olivia Balderes, Simone Sanna-Cherchi, Andrew S Bomback, Pietro A Canetta, Gerald B Appel, Jai Radhakrishnan, Hernan Trimarchi, Ben Sprangers, Daniel C Cattran, Heather Reich, York Pei, Pietro Ravani, Kresimir Galesic, Dita Maixnerova, Vladimir Tesar, Benedicte Stengel, Marie Metzger, Guillaume Canaud, Nicolas Maillard, Francois Berthoux, Laureline Berthelot, Evangeline Pillebout, Renato Monteiro, Raoul Nelson, Robert J Wyatt, William Smoyer, John Mahan, Al-Akash Samhar, Guillermo Hidalgo, Alejandro Quiroga, Patricia Weng, Raji Sreedharan, David Selewski, Keefe Davis, Mahmoud Kallash, Tetyana L Vasylyeva, Michelle Rheault, Aftab Chishti, Daniel Ranch, Scott E Wenderfer, Dmitry Samsonov, Donna J Claes, Oleh M Akchurin, Dimitrios Goumenos, Maria J Stangou, Judit Nagy, Tibor Kovacs, Enrico Fiaccadori, Antonio Amoroso, Cristina Barlassina, Daniele Cusi, Lucia Del Vecchio, Giovanni Giorgio Battaglia, Monica Bodria, Emanuela Boer, Luisa Bono, Giuliano Boscutti, Gianluca Caridi, Francesca Lugani, Gian Marco Ghiggeri, Rosanna Coppo, Licia Peruzzi, Vittoria Esposito, Ciro Esposito, Sandro Feriozzi, Rosaria Polci, Giovanni Frasca, Marco Galliani, Maurizio Garozzo, Adele Mitrotti, Loreto Gesualdo, Simona Granata, Gianluigi Zaza, Francesco Londrino, Riccardo Magistroni, Isabella Pisani, Andrea Magnano, Carmelita Marcantoni, Piergiorgio Messa, Renzo Mignani, Antonello Pani, Claudio Ponticelli, Dario Roccatello, Maurizio Salvadori, Erica Salvi, Domenico Santoro, Guido Gembillo, Silvana Savoldi, Donatella Spotti, Pasquale Zamboli, Claudia Izzi, Federico Alberici, Elisa Delbarba, Michał Florczak, Natalia Krata, Krzysztof Mucha, Leszek Pączek, Stanisław Niemczyk, Barbara Moszczuk, Malgorzata Pańczyk-Tomaszewska, Malgorzata Mizerska-Wasiak, Agnieszka Perkowska-Ptasińska, Teresa Bączkowska, Magdalena Durlik, Krzysztof Pawlaczyk, Przemyslaw Sikora, Marcin Zaniew, Dorota Kaminska, Magdalena Krajewska, Izabella Kuzmiuk-Glembin, Zbigniew Heleniak, Barbara Bullo-Piontecka, Tomasz Liberek, Alicja Dębska-Slizien, Tomasz Hryszko, Anna Materna-Kiryluk, Monika Miklaszewska, Shaji K Kumar, Katarzyna Dyga, Edyta Machura, Katarzyna Siniewicz-Luzeńczyk, Monika Pawlak-Bratkowska, Marcin Tkaczyk, Dariusz Runowski, Norbert Kwella, Dorota Drożdż, Ireneusz Habura, Florian Kronenberg, Larisa Prikhodina, David A van Heel, Bertrand Fontaine, Chris Cotsapas, Cisca Wijmenga, Andre Franke, Vito Annese, Peter K Gregersen, Sreeja Parameswaran, Matthew T Weirauch, Leah C Kottyan, John B Harley, Hitoshi Suzuki, Ichiei Narita, Shin Goto, Hajeong Lee, Dong-Ki Kim, Yon Su Kim, Jin Ho Park, BeLong Cho, Murim Choi, Ans Van Wijk, Ana Huerta, Elisabet Ars, Jose Ballarin, Sigrid Lundberg, Bruno Vogt, Laila-Yasmin Mani, Yasar Caliskan, Jonathan Barratt, Thilini Abeygunaratne, Philip A Kalra, Daniel P Gale, Ulf Panzer, Thomas Rauen, Jürgen Floege, Pascal Schlosser, Arif Bülent Ekici, Kai Uwe Eckardt, Nan Chen, Jingyuan Xie, Richard P Lifton, Ruth J F Loos, Eimear E Kenny, Iuliana Ionita-Laza, Anna Kottgen, Bruce A Julian, Jan Novak, Francesco Scolari, Hong Zhang, Ali G Gharavi
Genome-wide association analyses define pathogenic signaling pathways and prioritize drug targets for IgA nephropathy. Nature genetics (2023)
Chengyi Sun, Casey O Swoboda, Michael J Petrany, Sreeja Parameswaran, Andrew VonHandorf, Matthew T Weirauch, Christoph Lepper, Douglas P Millay
Lineage tracing of newly accrued nuclei in skeletal myofibers uncovers distinct transcripts and interplay between nuclear populations. bioRxiv : the preprint server for biology (2023)
Chong Wang, Xiang Liu, Jun Liang, Yohei Narita, Weiyue Ding, Difei Li, Luyao Zhang, Hongbo Wang, Merrin Man Long Leong, Isabella Hou, Catherine Gerdt, Chang Jiang, Qian Zhong, Zhonghui Tang, Carmy Forney, Leah C Kottyan, Matthew T Weirauch, Benjamin E Gewurz, Mu-Sheng Zeng, Sizun J Jiang, Mingxiang Teng, Bo Zhao
A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth. Nature communications 14 (1) (2023)
Chong Wang, Xiang Liu, Jun Liang, Yohei Narita, Weiyue Ding, Difei Li, Luyao Zhang, Hongbo Wang, Merrin Man Long Leong, Isabella Hou, Catherine Gerdt, Chang Jiang, Qian Zhong, Zhonghui Tang, Carmy Forney, Leah C Kottyan, Matthew T Weirauch, Benjamin E Gewurz, Mu-Sheng Zeng, Sizun J Jiang, Mingxiang Teng, Bo Zhao
A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth. Nature communications 14 (1) (2023)
Michael Brusilovsky, Mark Rochman, Tetsuo Shoda, Michael Kotliar, Julie M Caldwell, Lydia E Mack, John A Besse, Xiaoting Chen, Matthew T Weirauch, Artem Barski
Vitamin D receptor and STAT6 interactome governs oesophageal epithelial barrier responses to IL-13 signalling. Gut (2022)
Samuel J Virolainen, Andrew VonHandorf, Kenyatta C M F Viel, Matthew T Weirauch, Leah C Kottyan
Gene-environment interactions and their impact on human health. Genes and immunity 24 (1) (2022)
Samuel J Virolainen, Andrew VonHandorf, Kenyatta C M F Viel, Matthew T Weirauch, Leah C Kottyan
Gene-environment interactions and their impact on human health. Genes and immunity 24 (1) (2022)
Samuel J Virolainen, Andrew VonHandorf, Kenyatta C M F Viel, Matthew T Weirauch, Leah C Kottyan
Gene-environment interactions and their impact on human health. Genes and immunity (2022)
Laura Barreyro, Avery M Sampson, Chiharu Ishikawa, Kathleen M Hueneman, Kwangmin Choi, Mario A Pujato, Somchai Chutipongtanate, Michael Wyder, Wendy D Haffey, Eric O'Brien, Mark Wunderlich, Vighnesh Ramesh, Ellen K Gagliani, Cem Meydan, Yaseswini Neelamraju, Lyndsey C Bolanos, Susanne Christie, Molly A Smith, Madeline Niederkorn, Tomoya Muto, Santosh Kesari, Francine E Garrett-Bakelman, Boris Bartholdy, Britta Will, Matthew T Weirauch, James C Mulloy, Zartash Gul, Stephen Medlin, Rhett A Kovall, Ari M Melnick, John P Perentesis, Kenneth D Greis, Elmar Nurmemmedov, William L Seibel, Daniel T Starczynowski
Blocking UBE2N abrogates oncogenic immune signaling in acute myeloid leukemia. Science translational medicine 14 (635) (2022)
Samuel J Virolainen, Andrew VonHandorf, Kenyatta C M F Viel, Matthew T Weirauch, Leah C Kottyan
Gene-environment interactions and their impact on human health. Genes and immunity 24 (1) (2022)
Samuel J Virolainen, Andrew VonHandorf, Kenyatta C M F Viel, Matthew T Weirauch, Leah C Kottyan
Gene-environment interactions and their impact on human health. Genes and immunity (2022)
Tian Zhou, Xinyi Zhu, Zhizhong Ye, Yong-Fei Wang, Chao Yao, Ning Xu, Mi Zhou, Jianyang Ma, Yuting Qin, Yiwei Shen, Yuanjia Tang, Zhihua Yin, Hong Xu, Yutong Zhang, Xiaoli Zang, Huihua Ding, Wanling Yang, Ya Guo, John B Harley, Bahram Namjou, Kenneth M Kaufman, Leah C Kottyan, Matthew T Weirauch, Guojun Hou, Nan Shen
Lupus enhancer risk variant causes dysregulation of IRF8 through cooperative lncRNA and DNA methylation machinery. Nature communications 13 (1) (2022)
Samuel J Virolainen, Andrew VonHandorf, Kenyatta C M F Viel, Matthew T Weirauch, Leah C Kottyan
Gene-environment interactions and their impact on human health. Genes and immunity 24 (1) (2022)
Samuel J Virolainen, Andrew VonHandorf, Kenyatta C M F Viel, Matthew T Weirauch, Leah C Kottyan
Gene-environment interactions and their impact on human health. Genes and immunity (2022)
Samuel J Virolainen, Andrew VonHandorf, Kenyatta C M F Viel, Matthew T Weirauch, Leah C Kottyan
Gene-environment interactions and their impact on human health. Genes and immunity 24 (1) (2022)
Yi Kuang, Anna Pyo, Natanel Eafergen, Brittany Cain, Lisa M Gutzwiller, Ofri Axelrod, Ellen K Gagliani, Matthew T Weirauch, Raphael Kopan, Rhett A Kovall, David Sprinzak, Brian Gebelein
Enhancers with cooperative Notch binding sites are more resistant to regulation by the Hairless co-repressor. PLoS genetics 17 (9) (2021)
Azad Alizada, Nadiya Khyzha, Liangxi Wang, Lina Antounians, Xiaoting Chen, Melvin Khor, Minggao Liang, Kumaragurubaran Rathnakumar, Matthew T Weirauch, Alejandra Medina-Rivera, Jason E Fish, Michael D Wilson
Conserved regulatory logic at accessible and inaccessible chromatin during the acute inflammatory response in mammals. Nature communications 12 (1) (2021)
Matthew R Hass, Daniel Brissette, Sreeja Parameswaran, Mario A Pujato, Omer Donmez, Leah C Kottyan, Matthew T Weirauch, Raphael Kopan
Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets. PLoS genetics 17 (6) (2021)
Ted Hong, Sreeja Parameswaran, Omer A Donmez, Daniel Miller, Carmy Forney, Michael Lape, Mariana Saint Just Ribeiro, Jun Liang, Lee E Edsall, Albert F Magnusen, William Miller, Iouri Chepelev, John B Harley, Bo Zhao, Leah C Kottyan, Matthew T Weirauch
Epstein-Barr virus nuclear antigen 2 extensively rewires the human chromatin landscape at autoimmune risk loci. Genome research (2021)
Xiaoming Lu, Xiaoting Chen, Carmy Forney, Omer Donmez, Daniel Miller, Sreeja Parameswaran, Ted Hong, Yongbo Huang, Mario Pujato, Tareian Cazares, Emily R Miraldi, John P Ray, Carl G de Boer, John B Harley, Matthew T Weirauch, Leah C Kottyan
Global discovery of lupus genetic risk variant allelic enhancer activity. Nature communications 12 (1) (2021)
Nicole Oatman, Nupur Dasgupta, Priyanka Arora, Kwangmin Choi, Mruniya V Gawali, Nishtha Gupta, Sreeja Parameswaran, Joseph Salomone, Julie A Reisz, Sean E Lawler, Frank B Furnari, Cameron Brennan, Jianqiang Wu, Larry Sallans, Gary Gudelsky, Pankaj B Desai, Brian Gebelein, Matthew T Weirauch, Angelo D'Alessandro, Kakajan Komurov, Biplab DasGupta
Mechanisms of stearoyl CoA desaturase inhibitor sensitivity and acquired resistance in cancer. Science advances 7 (7) (2021)
Jennifer M Felton, Sushmitha Vallabh, Sreeja Parameswaran, Lee E Edsall, Kevin Ernst, Benjamin Wronowski, Astha Malik, Michael Kotliar, Matthew T Weirauch, Artem Barski, Patricia C Fulkerson, Marc E Rothenberg
Epigenetic Analysis of the Chromatin Landscape Identifies a Repertoire of Murine Eosinophil-Specific PU.1-Bound Enhancers. Journal of immunology (Baltimore, Md. : 1950) 207 (4) (2021)
Emily R Miraldi, Xiaoting Chen, Matthew T Weirauch
Deciphering cis-regulatory grammar with deep learning. Nature genetics 53 (3) (2021)
Guojun Hou, Isaac T W Harley, Xiaoming Lu, Tian Zhou, Ning Xu, Chao Yao, Yuting Qin, Ye Ouyang, Jianyang Ma, Xinyi Zhu, Xiang Yu, Hong Xu, Dai Dai, Huihua Ding, Zhihua Yin, Zhizhong Ye, Jun Deng, Mi Zhou, Yuanjia Tang, Bahram Namjou, Ya Guo, Matthew T Weirauch, Leah C Kottyan, John B Harley, Nan Shen
SLE non-coding genetic risk variant determines the epigenetic dysfunction of an immune cell specific enhancer that controls disease-critical microRNA expression. Nature communications 12 (1) (2021)
Calvin C Chan, Michelle S M A Damen, Maria E Moreno-Fernandez, Traci E Stankiewicz, Monica Cappelletti, Pablo C Alarcon, Jarren R Oates, Jessica R Doll, Rajib Mukherjee, Xiaoting Chen, Rebekah Karns, Matthew T Weirauch, Michael A Helmrath, Thomas H Inge, Senad Divanovic
Type I interferon sensing unlocks dormant adipocyte inflammatory potential. Nature communications 11 (1) (2020)
Michael J Petrany, Casey O Swoboda, Chengyi Sun, Kashish Chetal, Xiaoting Chen, Matthew T Weirauch, Nathan Salomonis, Douglas P Millay
Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers. Nature communications 11 (1) (2020)
So Maezawa, Akihiko Sakashita, Masashi Yukawa, Xiaoting Chen, Kazuki Takahashi, Kris G Alavattam, Ippo Nakata, Matthew T Weirauch, Artem Barski, Satoshi H Namekawa
Super-enhancer switching drives a burst in gene expression at the mitosis-to-meiosis transition. Nature structural & molecular biology 27 (10) (2020)
Maxwell J Scott, Joshua B Benoit, Rebecca J Davis, Samuel T Bailey, Virag Varga, Ellen O Martinson, Paul V Hickner, Zainulabeuddin Syed, Gisele A Cardoso, Tatiana Teixeira Torres, Matthew T Weirauch, Elizabeth H Scholl, Adam M Phillippy, Agustin Sagel, Mario Vasquez, Gladys Quintero, Steven R Skoda
Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs. Communications biology 3 (1) (2020)
Sofia Sirvent, Sócrates Herrera Valencia, James Davies, Kalum Clayton, Zhiguo Wu, Jeongmin Woo, Jeremy Riddell, Virendra K Chaudhri, Patrick S Stumpf, Liliya Angelova Nazlamova, Gabrielle Wheway, Matthew Rose-Zerilli, Jonathan J West, Mario Pujato, Xiaoting Chen, Christopher H Woelk, Ben D MacArthur, Michael R Ardern-Jones, Peter S Friedmann, Matthew T Weirauch, Harinder Singh, Marta E Polak
Genomic programming of IRF4-expressing human Langerhans cells. Nature communications 11 (1) (2020)
Mariana L Stevens, Zhonghua Zhang, Elisabet Johansson, Samriddha Ray, Amrita Jagpal, Brandy P Ruff, Arjun Kothari, Hua He, Lisa J Martin, Hong Ji, Kathryn Wikenheiser-Brokamp, Matthew T Weirauch, Dorothy M Supp, Jocelyn M Biagini, Gurjit K Khurana Hershey
Disease-associated KIF3A variants alter gene methylation and expression impacting skin barrier and atopic dermatitis risk. Nature communications 11 (1) (2020)
Xueping Liu, Dorte Helenius, Line Skotte, Robin N Beaumont, Matthias Wielscher, Frank Geller, Julius Juodakis, Anubha Mahajan, Jonathan P Bradfield, Frederick T J Lin, Suzanne Vogelezang, Mariona Bustamante, Tarunveer Singh Ahluwalia, Niina Pitkänen, Carol A Wang, Jonas Bacelis, Maria C Borges, Ge Zhang, Bruce A Bedell, Robert M Rossi, Kristin Skogstrand, Shouneng Peng, Wesley K Thompson, Vivek Appadurai, Deborah A Lawlor, Ilkka E J Kalliala, Christine Power, Mark I McCarthy, Heather Allison Boyd, Mary L Marazita, Hakon H Hakonarson, M Geoffrey Hayes, Denise M Scholtens, Fernando Rivadeneira, Vincent W V Jaddoe, Rebecca K Vinding, Hans Bisgaard, Bridget A Knight, Katja Pahkala, Olli Raitakari, Øyvind Helgeland, Stefan E Johansson, Pal Rasmus Njolstad, João Fadista, Andrew J Schork, Ron Nudel, Daniel E Miller, Xiaoting Chen, Matthew T Weirauch, Preben Bo Mortensen, Anders Dupont Børglum, Merete Nordentoft, Ole Mors, Ke Hao, Kelli K Ryckman, David Michael Hougaard, Leah C Kottyan, Craig E Pennell, Leo-Pekka Lyytikainen, Klaus Bønnelykke, Martine Vrijheid, Janine F Felix, William L Lowe, Struan F A Grant, Elina Hyppӧnen, Bo Jacobson, Marjo-Riitta Jarvelin, Louis J Muglia, Jeffrey C Murray, Rachel M Freathy, Thomas M Werge, Mads Melbye, Alfonso A Buil Demur, Bjarke Feenstra
Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 associate with gestational duration. Nature communications 10 (1) (2019)
Samuel A Lambert, Ally W H Yang, Alexander Sasse, Gwendolyn Cowley, Mihai Albu, Mark X Caddick, Quaid D Morris, Matthew T Weirauch, Timothy R Hughes
Similarity regression predicts evolution of transcription factor sequence specificity. Nature genetics 51 (6) (2019)
Daniel E Miller, Carmy Forney, Mark Rochman, Stacey Cranert, Jeffery Habel, Jeffrey Rymer, Arthur Lynch, Connor Schroeder, Josh Lee, Amber Sauder, Quinton Smith, Mehak Chawla, Michael P Trimarchi, Xiaoming Lu, Ellen Fjellman, Michael Brusilovsky, Artem Barski, Stephen Waggoner, Matthew T Weirauch, Xiaoting Chen, Leah C Kottyan
Genetic, Inflammatory, and Epithelial Cell Differentiation Factors Control Expression of Human Calpain-14. G3 (Bethesda, Md.) 9 (3) (2019)
J D Burleson, Dylan Siniard, Veda K Yadagiri, Xiaoting Chen, Matthew T Weirauch, Brandy P Ruff, Eric B Brandt, Gurjit K Khurana Hershey, Hong Ji
TET1 contributes to allergic airway inflammation and regulates interferon and aryl hydrocarbon receptor signaling pathways in bronchial epithelial cells. Scientific reports 9 (1) (2019)
Kristen A Panfilio, Iris M Vargas Jentzsch, Joshua B Benoit, Deniz Erezyilmaz, Yuichiro Suzuki, Stefano Colella, Hugh M Robertson, Monica F Poelchau, Robert M Waterhouse, Panagiotis Ioannidis, Matthew T Weirauch, Daniel S T Hughes, Shwetha C Murali, John H Werren, Chris G C Jacobs, Elizabeth J Duncan, David Armisén, Barbara M I Vreede, Patrice Baa-Puyoulet, Chloé S Berger, Chun-Che Chang, Hsu Chao, Mei-Ju M Chen, Yen Ta Chen, Christopher P Childers, Ariel D Chipman, Andrew G Cridge, Antonin Jean Johan Crumière, Peter K Dearden, Elise M Didion, Huyen Dinh, Harsha Vardhan Doddapaneni, Amanda Dolan, Shannon Dugan, Cassandra G Extavour, Gérard Febvay, Markus Friedrich, Neta Ginzburg, Yi Han, Peter Heger, Christopher J Holmes, Thorsten Horn, Yi-Min Hsiao, Emily C Jennings, Johnston J Spencer, Tamsin E M Jones, Jeffery W Jones, Abderrahman Khila, Stefan Koelzer, Viera Kováčová, Megan Leask, Sandra L Lee, Chien-Yueh Lee, Mackenzie R Lovegrove, Hsiao-Ling Lu, Yong Lu, Patricia J Moore, Monica C Munoz-Torres, Donna M Muzny, Subba Reddy Palli, Nicolas Parisot, Leslie Pick, Megan L Porter, Jiaxin Qu, Peter N Refki, Rose Richter, Rolando Rivera-Pomar, Andrew J Rosendale, Siegfried Roth, Lena Sachs, M Emília Santos, Jan Seibert, Essia Sghaier, Jayendra Nath Shukla, Richard J Stancliffe, Olivia Tidswell, Lucila Traverso, Maurijn van der Zee, Séverine Viala, Kim Carlyle Worley, Evgeny M Zdobnov, Richard A Gibbs, Stephen Richards
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome biology 20 (1) (2019)
Zirong Gu, John Kalambogias, Shin Yoshioka, Wenqi Han, Zhuo Li, Yuka Imamura Kawasawa, Sirisha Pochareddy, Zhen Li, Fuchen Liu, Xuming Xu, H. R. Sagara Wijeratne, Masaki Ueno, Emily Blatz, Joseph Salomone, Atsushi Kumanogoh, Mladen-Roko Rasin, Brian Gebelein, Matthew T Weirauch, Nenad Sestan, John H Martin, Yutaka Yoshida
Control of species-dependent cortico-motoneuronal connections underlying manual dexterity. Science (New York, N.Y.) 357 (6349) (2018)
John B Harley, Xiaoting Chen, Mario Pujato, Daniel Miller, Avery Maddox, Carmy Forney, Albert F Magnusen, Arthur Lynch, Kashish Chetal, Masashi Yukawa, Artem Barski, Nathan Salomonis, Kenneth M Kaufman, Leah C Kottyan, Matthew T Weirauch
Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity. Nature genetics 50 (5) (2018)
Sean D Schoville, Yolanda H Chen, Martin N Andersson, Joshua B Benoit, Anita Bhandari, Julia H Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju M Chen, Anna K Childers, Christopher P Childers, Olivier Christiaens, Justin Clements, Elise M Didion, Elena N Elpidina, Patamarerk Engsontia, Markus Friedrich, Inmaculada García-Robles, Richard A Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Grynberg, Bernard Henrissat, Emily C Jennings, Jeffery W Jones, Megha Kalsi, Sher A Khan, Abhishek Kumar, Fei Li, Vincent Lombard, Xingzhou Ma, Alexander Martynov, Nicholas J Miller, Robert F Mitchell, Monica Munoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen A Panfilio, Yannick Pauchet, Lindsey C Perkin, Marko Petek, Monica F Poelchau, Éric Record, Joseph P Rinehart, Hugh M Robertson, Andrew J Rosendale, Victor M Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Gregg W C Thomas, Alex S Torson, Iris M Vargas Jentzsch, Matthew T Weirauch, Ashley D Yates, George D Yocum, June-Sun Yoon, Stephen Richards
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Scientific reports 8 (1) (2018)
Cai Zhang, Joonbae Seo, Kazutoshi Murakami, Esam S B Salem, Elise Bernhard, Vishnupriya J Borra, Kwangmin Choi, Celvie L Yuan, Calvin C Chan, Xiaoting Chen, Taosheng Huang, Matthew T Weirauch, Senad Divanovic, Nathan R Qi, Hala Einakat Thomas, Carol A Mercer, Haruhiko Siomi, Takahisa Nakamura
Hepatic Ago2-mediated RNA silencing controls energy metabolism linked to AMPK activation and obesity-associated pathophysiology. Nature communications 9 (1) (2018)
Leila Valanejad, Ashley Cast, Mary Wright, Karl-Dimiter Bissig, Rebekah Karns, Matthew T Weirauch, Nikolai Timchenko
PARP1 activation increases expression of modified tumor suppressors and pathways underlying development of aggressive hepatoblastoma. Communications biology 1 (2018)
David E Muench, Kyle Ferchen, Chinavenmeni S Velu, Kith Pradhan, Kashish Chetal, Xiaoting Chen, Matthew T Weirauch, Clemencia Colmenares, Amit Verma, Nathan Salomonis, H Leighton Grimes
SKI controls MDS-associated chronic TGF-β signaling, aberrant splicing, and stem cell fitness. Blood 132 (21) (2018)
Vishnu Modur, Navneet Singh, Vakul Mohanty, Eunah Chung, Belal Muhammad, Kwangmin Choi, Xiaoting Chen, Kashish Chetal, Nancy Ratner, Nathan Salomonis, Matthew T Weirauch, Susan Waltz, Gang Huang, Lisa M Privette Vinnedge, Joo-Seop Park, Edith M Janssen, Kakajan Komurov
Defective transcription elongation in a subset of cancers confers immunotherapy resistance. Nature communications 9 (1) (2018)
Rishi Raj Chhipa, Qiang Fan, Jane Anderson, Ranjithmenon Muraleedharan, Yan Huang, Georgianne Ciraolo, Xiaoting Chen, Ronald Waclaw, Lionel M Chow, Zaza Khuchua, Matthew Kofron, Matthew T Weirauch, Ady Kendler, Christopher McPherson, Nancy Ratner, Ichiro Nakano, Nupur Dasgupta, Kakajan Komurov, Biplab DasGupta
AMP kinase promotes glioblastoma bioenergetics and tumour growth. Nature cell biology 20 (7) (2018)

Matthew T Weirauch.css-eqlu8i{font-size:small;padding-left:4px;} (Matthew Weirauch)

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Matthew T Weirauch (Matthew Weirauch)