Jaewoo Kang

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 25

Top Venues

Bioinformatics (Oxford, England)

PloS one

Nature communications

Database : the journal of biological databases and curation

Korea University

University of Wisconsin Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Korea University Sep 01 2006

South Korea

Professor :: Computer Science

Education History

University of Wisconsin Madison Aug 15 1998 - Jul 15 2003

United States

PHD :: Computer science

Publications

Minbyul Jeong, Jiwoong Sohn, Mujeen Sung, Jaewoo Kang
Improving medical reasoning through retrieval and self-reflection with retrieval-augmented large language models. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Mogan Gim, Jueon Park, Soyon Park, Sanghoon Lee, Seungheun Baek, Junhyun Lee, Ngoc-Quang Nguyen, Jaewoo Kang
MolPLA: a molecular pretraining framework for learning cores, R-groups and their linker joints. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Minbyul Jeong, Jiwoong Sohn, Mujeen Sung, Jaewoo Kang
Improving medical reasoning through retrieval and self-reflection with retrieval-augmented large language models. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Sunkyu Kim, Seung-Seob Kim, Eejung Kim, Michael Cecchini, Mi-Suk Park, Ji A Choi, Sung Hyun Kim, Ho Kyoung Hwang, Chang Moo Kang, Hye Jin Choi, Sang Joon Shin, Jaewoo Kang, Choong-Kun Lee
Deep-Transfer-Learning-Based Natural Language Processing of Serial Free-Text Computed Tomography Reports for Predicting Survival of Patients With Pancreatic Cancer. JCO clinical cancer informatics 8 (2024)
Minbyul Jeong, Jiwoong Sohn, Mujeen Sung, Jaewoo Kang
Improving medical reasoning through retrieval and self-reflection with retrieval-augmented large language models. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Mogan Gim, Jueon Park, Soyon Park, Sanghoon Lee, Seungheun Baek, Junhyun Lee, Ngoc-Quang Nguyen, Jaewoo Kang
MolPLA: a molecular pretraining framework for learning cores, R-groups and their linker joints. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Mogan Gim, Jueon Park, Soyon Park, Sanghoon Lee, Seungheun Baek, Junhyun Lee, Ngoc-Quang Nguyen, Jaewoo Kang
MolPLA: a molecular pretraining framework for learning cores, R-groups and their linker joints. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Timothy Bergquist, Thomas Schaffter, Yao Yan, Thomas Yu, Justin Prosser, Jifan Gao, Guanhua Chen, Łukasz Charzewski, Zofia Nawalany, Ivan Brugere, Renata Retkute, Alidivinas Prusokas, Augustinas Prusokas, Yonghwa Choi, Sanghoon Lee, Junseok Choe, Inggeol Lee, Sunkyu Kim, Jaewoo Kang, Sean D Mooney, Justin Guinney, null null, Aaron Lee, Ali Salehzadeh-Yazdi, Alidivinas Prusokas, Anand Basu, Anas Belouali, Ann-Kristin Becker, Ariel Israel, Augustinas Prusokas, B Winter, Carlos Vega Moreno, Christoph Kurz, Dagmar Waltemath, Darius Schweinoch, Enrico Glaab, Gang Luo, Guanhua Chen, Helena U Zacharias, Hezhe Qiao, Inggeol Lee, Ivan Brugere, Jaewoo Kang, Jifan Gao, Julia Truthmann, JunSeok Choe, Kari A Stephens, Lars Kaderali, Lav R Varshney, Marcus Vollmer, Maria-Theodora Pandi, Martin L Gunn, Meliha Yetisgen, Neetika Nath, Noah Hammarlund, Oliver Müller-Stricker, Panagiotis Togias, Patrick J Heagerty, Peter Muir, Peter Banda, Renata Retkute, Ron Henkel, Sagar Madgi, Samir Gupta, Sanghoon Lee, Sean Mooney, Shabeeb Kannattikuni, Shamim Sarhadi, Shikhar Omar, Shuo Wang, Soumyabrata Ghosh, Stefan Neumann, Stefan Simm, Subha Madhavan, Sunkyu Kim, Thomas Von Yu, Venkata Satagopam, Vikas Pejaver, Yachee Gupta, Yonghwa Choi, Zofia Nawalany, Łukasz Charzewski, Aaron Lee, Ali Salehzadeh-Yazdi, Alidivinas Prusokas, Anand Basu, Anas Belouali, Ann-Kristin Becker, Ariel Israel, Augustinas Prusokas, B Winter, Carlos Vega Moreno, Christoph Kurz, Dagmar Waltemath, Darius Schweinoch, Enrico Glaab, Gang Luo, Guanhua Chen, Helena U Zacharias, Hezhe Qiao, Inggeol Lee, Ivan Brugere, Jaewoo Kang, Jifan Gao, Julia Truthmann, JunSeok Choe, Kari A Stephens, Lars Kaderali, Lav R Varshney, Marcus Vollmer, Maria-Theodora Pandi, Martin L Gunn, Meliha Yetisgen, Neetika Nath, Noah Hammarlund, Oliver Müller-Stricker, Panagiotis Togias, Patrick J Heagerty, Peter Muir, Peter Banda, Renata Retkute, Ron Henkel, Sagar Madgi, Samir Gupta, Sanghoon Lee, Sean Mooney, Shabeeb Kannattikuni, Shamim Sarhadi, Shikhar Omar, Shuo Wang, Soumyabrata Ghosh, Stefan Neumann, Stefan Simm, Subha Madhavan, Sunkyu Kim, Thomas Von Yu, Venkata Satagopam, Vikas Pejaver, Yachee Gupta, Yonghwa Choi, Zofia Nawalany, Łukasz Charzewski, Aaron Lee, Ali Salehzadeh-Yazdi, Alidivinas Prusokas, Anand Basu, Anas Belouali, Ann-Kristin Becker, Ariel Israel, Augustinas Prusokas, B Winter, Carlos Vega Moreno, Christoph Kurz, Dagmar Waltemath, Darius Schweinoch, Enrico Glaab, Gang Luo, Guanhua Chen, Helena U Zacharias, Hezhe Qiao, Inggeol Lee, Ivan Brugere, Jaewoo Kang, Jifan Gao, Julia Truthmann, JunSeok Choe, Kari A Stephens, Lars Kaderali, Lav R Varshney, Marcus Vollmer, Maria-Theodora Pandi, Martin L Gunn, Meliha Yetisgen, Neetika Nath, Noah Hammarlund, Oliver Müller-Stricker, Panagiotis Togias, Patrick J Heagerty, Peter Muir, Peter Banda, Renata Retkute, Ron Henkel, Sagar Madgi, Samir Gupta, Sanghoon Lee, Sean Mooney, Shabeeb Kannattikuni, Shamim Sarhadi, Shikhar Omar, Shuo Wang, Soumyabrata Ghosh, Stefan Neumann, Stefan Simm, Subha Madhavan, Sunkyu Kim, Thomas Von Yu, Venkata Satagopam, Vikas Pejaver, Yachee Gupta, Yonghwa Choi, Zofia Nawalany, Łukasz Charzewski, Aaron Lee, Ali Salehzadeh-Yazdi, Alidivinas Prusokas, Anand Basu, Anas Belouali, Ann-Kristin Becker, Ariel Israel, Augustinas Prusokas, B Winter, Carlos Vega Moreno, Christoph Kurz, Dagmar Waltemath, Darius Schweinoch, Enrico Glaab, Gang Luo, Guanhua Chen, Helena U Zacharias, Hezhe Qiao, Inggeol Lee, Ivan Brugere, Jaewoo Kang, Jifan Gao, Julia Truthmann, JunSeok Choe, Kari A Stephens, Lars Kaderali, Lav R Varshney, Marcus Vollmer, Maria-Theodora Pandi, Martin L Gunn, Meliha Yetisgen, Neetika Nath, Noah Hammarlund, Oliver Müller-Stricker, Panagiotis Togias, Patrick J Heagerty, Peter Muir, Peter Banda, Renata Retkute, Ron Henkel, Sagar Madgi, Samir Gupta, Sanghoon Lee, Sean Mooney, Shabeeb Kannattikuni, Shamim Sarhadi, Shikhar Omar, Shuo Wang, Soumyabrata Ghosh, Stefan Neumann, Stefan Simm, Subha Madhavan, Sunkyu Kim, Thomas Von Yu, Venkata Satagopam, Vikas Pejaver, Yachee Gupta, Yonghwa Choi, Zofia Nawalany, Łukasz Charzewski, Aaron Lee, Ali Salehzadeh-Yazdi, Alidivinas Prusokas, Anand Basu, Anas Belouali, Ann-Kristin Becker, Ariel Israel, Augustinas Prusokas, B Winter, Carlos Vega Moreno, Christoph Kurz, Dagmar Waltemath, Darius Schweinoch, Enrico Glaab, Gang Luo, Guanhua Chen, Helena U Zacharias, Hezhe Qiao, Inggeol Lee, Ivan Brugere, Jaewoo Kang, Jifan Gao, Julia Truthmann, JunSeok Choe, Kari A Stephens, Lars Kaderali, Lav R Varshney, Marcus Vollmer, Maria-Theodora Pandi, Martin L Gunn, Meliha Yetisgen, Neetika Nath, Noah Hammarlund, Oliver Müller-Stricker, Panagiotis Togias, Patrick J Heagerty, Peter Muir, Peter Banda, Renata Retkute, Ron Henkel, Sagar Madgi, Samir Gupta, Sanghoon Lee, Sean Mooney, Shabeeb Kannattikuni, Shamim Sarhadi, Shikhar Omar, Shuo Wang, Soumyabrata Ghosh, Stefan Neumann, Stefan Simm, Subha Madhavan, Sunkyu Kim, Thomas Von Yu, Venkata Satagopam, Vikas Pejaver, Yachee Gupta, Yonghwa Choi, Zofia Nawalany, Łukasz Charzewski
Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine. Journal of the American Medical Informatics Association : JAMIA (2023)
WonJin Yoon, Sean Yi, Richard Jackson, Hyunjae Kim, Sunkyu Kim, Jaewoo Kang
Biomedical relation extraction with knowledge base-refined weak supervision. Database : the journal of biological databases and curation 2023 (2023)
Mogan Gim, Junseok Choe, Seungheun Baek, Jueon Park, Chaeeun Lee, Minjae Ju, Sumin Lee, Jaewoo Kang
ArkDTA: attention regularization guided by non-covalent interactions for explainable drug-target binding affinity prediction. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Hyunjae Kim, Jaewoo Kang
How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities? IEEE access : practical innovations, open solutions 10 (2022)
Hyunjae Kim, Mujeen Sung, WonJin Yoon, Sungjoon Park, Jaewoo Kang
Full-text chemical identification with improved generalizability and tagging consistency. Database : the journal of biological databases and curation 2022 (2022)
WonJin Yoon, Richard Jackson, Aron Lagerberg, Jaewoo Kang
Sequence tagging for biomedical extractive question answering. Bioinformatics (Oxford, England) 38 (15) (2022)
Mujeen Sung, Minbyul Jeong, Yonghwa Choi, Donghyeon Kim, Jinhyuk Lee, Jaewoo Kang
BERN2: an advanced neural biomedical named entity recognition and normalization tool. Bioinformatics (Oxford, England) 38 (20) (2022)
Gwanghoon Jang, Sungjoon Park, Sanghoon Lee, Sunkyu Kim, Sejeong Park, Jaewoo Kang
Predicting mechanism of action of novel compounds using compound structure and transcriptomic signature coembedding. Bioinformatics (Oxford, England) 37 (Suppl_1) (2021)
Anna Cichońska, Balaguru Ravikumar, Robert J Allaway, Fangping Wan, Sungjoon Park, Oleksandr Isaev, Shuya Li, Michael Mason, Andrew Lamb, Ziaurrehman Tanoli, Minji Jeon, Sunkyu Kim, Mariya Popova, Stephen J Capuzzi, Jianyang Zeng, Kristen Dang, Gregory Koytiger, Jaewoo Kang, Carrow I Wells, Timothy M Willson, null null, Tudor I Oprea, Avner Schlessinger, David Harold Drewry, Gustavo Stolovitzky, Krister Wennerberg, Justin Guinney, Tero Aittokallio
Crowdsourced mapping of unexplored target space of kinase inhibitors. Nature communications 12 (1) (2021)
Zhaoping Xiong, Minji Jeon, Robert J Allaway, Jaewoo Kang, Donghyeon Park, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Hualiang Jiang, Mingyue Zheng, Aik Choon Tan, Xindi Guo, null null, Kristen K Dang, Alex Tropsha, Chana Hecht, Tirtha K Das, Heather A Carlson, Ruben Abagyan, Justin Guinney, Avner Schlessinger, Ross Cagan
Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge. PLoS computational biology 17 (9) (2021)
Jian Xu, Sunkyu Kim, Min Song, Minbyul Jeong, Donghyeon Kim, Jaewoo Kang, Justin F Rousseau, Xin Li, Weijia Xu, Vetle I Torvik, Yi Bu, Chongyan Chen, Islam Akef Ebeid, Daifeng Li, Ying Ding
Building a PubMed knowledge graph. Scientific data 7 (1) (2020)
Hwejin Jung, Bilal Lodhi, Jaewoo Kang
An automatic nuclei segmentation method based on deep convolutional neural networks for histopathology images. BMC biomedical engineering 1 (2019)
Jocelyn Barbosa, Woo-Keun Seo, Jaewoo Kang
paraFaceTest: an ensemble of regression tree-based facial features extraction for efficient facial paralysis classification. BMC medical imaging 19 (1) (2019)
Michael Patrick Menden, Dennis Wang, Michael Mason, Bence Szalai, Krishna C Bulusu, Yuanfang Guan, Thomas V Yu, Jaewoo Kang, Minji Jeon, Russ Wolfinger, Tin Nguyen, Mikhail Zaslavskiy, null null, In Sock Jang, Zara Ghazoui, Mehmet Eren Ahsen, Robert Vogel, Elias Chaibub Neto, Thea Norman, Eric K Y Tang, Mathew J Garnett, Giovanni Y Di Veroli, Stephen Fawell, Gustavo Stolovitzky, Justin Guinney, Jonathan R Dry, Julio Saez-Rodriguez
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen. Nature communications 10 (1) (2019)
Sangrak Lim, Kyubum Lee, Jaewoo Kang
Drug drug interaction extraction from the literature using a recursive neural network. PloS one 13 (1) (2018)
Seongsoon Kim, Donghyeon Park, Yonghwa Choi, Myunggyo Lee, Byounggun Kim, Minji Jeon, Jihye Kim, Aik Choon Tan, Jaewoo Kang
A Pilot Study of Biomedical Text Comprehension using an Attention-Based Deep Neural Reader: Design and Experimental Analysis. JMIR medical informatics 6 (1) (2018)
Hwejin Jung, Bumsoo Kim, Inyeop Lee, Junhyun Lee, Jaewoo Kang
Classification of lung nodules in CT scans using three-dimensional deep convolutional neural networks with a checkpoint ensemble method. BMC medical imaging 18 (1) (2018)
Sunwon Lee, Donghyeon Kim, Kyubum Lee, Jaehoon Choi, Seongsoon Kim, Minji Jeon, Sangrak Lim, Donghee Choi, Sunkyu Kim, Aik-Choon Tan, Jaewoo Kang
BEST: Next-Generation Biomedical Entity Search Tool for Knowledge Discovery from Biomedical Literature. PloS one 11 (10) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jaewoo Kang