Jaime A Castro-Mondragon

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 7

Top Topics

Transcription Factor

Lipopolysaccharide Induced

Top Venues

Nucleic acids research

Genome medicine

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Ieva Rauluseviciute, Timothée Launay, Guido Barzaghi, Sarvesh Nikumbh, Boris Lenhard, Arnaud Regis Krebs, Jaime A Castro-Mondragon, Anthony Mathelier
Identification of transcription factor co-binding patterns with non-negative matrix factorization. Nucleic acids research (2024)
Ieva Rauluseviciute, Rafael Riudavets-Puig, Romain Blanc-Mathieu, Jaime A Castro-Mondragon, Katalin Ferenc, Vipin Kumar, Roza Berhanu Lemma, Jeremy Lucas, Jeanne Chèneby, Damir Baranasic, Aziz Khan, Oriol Fornes, Sveinung Gundersen, Morten Johansen, Eivind Hovig, Boris Lenhard, Albin Sandelin, Wyeth W Wasserman, Francois Parcy, Anthony Mathelier
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic acids research (2023)
Walter Santana-Garcia, Jaime A Castro-Mondragon, Mónica Padilla-Gálvez, Nga Thi Thuy Nguyen, Ana Elizondo-Salas, Najla Ksouri, François Gerbes, Denis Thieffry, Pierre Vincens, Bruno Contreras-Moreira, Jacques van Helden, Morgane Thomas-Chollier, Alejandra Medina-Rivera
RSAT 2022: regulatory sequence analysis tools. Nucleic acids research (2022)
Jaime A Castro-Mondragon, Miriam Ragle Aure, Ole Christian Lingjærde, Anita Langerød, John W M Martens, Anne-Lise Børresen-Dale, Vessela N Kristensen, Anthony Mathelier
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers. Nucleic acids research (2022)
Miriam Ragle Aure, Thomas Fleischer, Sunniva Bjørklund, Jørgen Ankill, Jaime A Castro-Mondragon, null null, Anne-Lise Børresen-Dale, Jorg Tost, Kristine K Sahlberg, Anthony Mathelier, Xavier Tekpli, Vessela N Kristensen
Crosstalk between microRNA expression and DNA methylation drives the hormone-dependent phenotype of breast cancer. Genome medicine 13 (1) (2021)
David Santiago-Algarra, Charbel Souaid, Himanshu Narayan Singh, Lan T M Dao, Saadat Hussain, Alejandra Medina-Rivera, Lucia Ramirez-Navarro, Jaime A Castro-Mondragon, Nori Sadouni, Guillaume Charbonnier, Salvatore Spicuglia
Epromoters function as a hub to recruit key transcription factors required for the inflammatory response. Nature communications 12 (1) (2021)
Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y Leung, Alejandro Aguirre, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoit Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W Wasserman, Francois Parcy, Anthony Mathelier
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. Nucleic acids research (2021)