Boris Lenhard

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 29

Top Topics

Attention Deficit Hyperactivity Disorder

Transcription Factor

Genome Wide Association Study

Top Venues

Nature communications

Nucleic acids research

FASEB journal : official publication of the Federation of American Societies for Experimental Biology

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Nejc Haberman, Rebecca Cheung, Grazia Pizza, Nevena Cvetesic, Dorka Nagy, Hannah Maude, Lorea Blazquez, Boris Lenhard, Inês Cebola, Guy A Rutter, Aida Martinez-Sanchez
Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 38 (16) (2024)
Ieva Rauluseviciute, Timothée Launay, Guido Barzaghi, Sarvesh Nikumbh, Boris Lenhard, Arnaud Regis Krebs, Jaime A Castro-Mondragon, Anthony Mathelier
Identification of transcription factor co-binding patterns with non-negative matrix factorization. Nucleic acids research (2024)
Nejc Haberman, Rebecca Cheung, Grazia Pizza, Nevena Cvetesic, Dorka Nagy, Hannah Maude, Lorea Blazquez, Boris Lenhard, Inês Cebola, Guy A Rutter, Aida Martinez-Sanchez
Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 38 (16) (2024)
Nejc Haberman, Rebecca Cheung, Grazia Pizza, Nevena Cvetesic, Dorka Nagy, Hannah Maude, Lorea Blazquez, Boris Lenhard, Inês Cebola, Guy A Rutter, Aida Martinez-Sanchez
Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells. bioRxiv : the preprint server for biology (2024)
Nejc Haberman, Rebecca Cheung, Grazia Pizza, Nevena Cvetesic, Dorka Nagy, Hannah Maude, Lorea Blazquez, Boris Lenhard, Inês Cebola, Guy A Rutter, Aida Martinez-Sanchez
Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells. bioRxiv : the preprint server for biology (2024)
Nejc Haberman, Rebecca Cheung, Grazia Pizza, Nevena Cvetesic, Dorka Nagy, Hannah Maude, Lorea Blazquez, Boris Lenhard, Inês Cebola, Guy A Rutter, Aida Martinez-Sanchez
Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 38 (16) (2024)
Sarvesh Nikumbh, Boris Lenhard
Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation. PLoS computational biology 19 (11) (2023)
Liam McAllan, Damir Baranasic, Sergio Villicaña, Scarlett Brown, Weihua Zhang, Benjamin Lehne, Marco Adamo, Andrew Jenkinson, Mohamed Elkalaawy, Borzoueh Mohammadi, Majid Hashemi, Nadia Fernandes, Nathalie Lambie, Richard Williams, Colette E Christiansen, Youwen Yang, Liudmila Zudina, Vasiliki Lagou, Sili Tan, Juan Castillo-Fernandez, James W D King, Richie Soong, Paul Elliott, James Scott, Inga Prokopenko, Inês Cebola, Marie Loh, Boris Lenhard, Rachel L Batterham, Jordana T Bell, John C Chambers, Jaspal S Kooner, William R Scott
Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes. Nature communications 14 (1) (2023)
Ieva Rauluseviciute, Rafael Riudavets-Puig, Romain Blanc-Mathieu, Jaime A Castro-Mondragon, Katalin Ferenc, Vipin Kumar, Roza Berhanu Lemma, Jeremy Lucas, Jeanne Chèneby, Damir Baranasic, Aziz Khan, Oriol Fornes, Sveinung Gundersen, Morten Johansen, Eivind Hovig, Boris Lenhard, Albin Sandelin, Wyeth W Wasserman, Francois Parcy, Anthony Mathelier
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic acids research (2023)
Ediem Al-Jibury, James W D King, Ya Guo, Boris Lenhard, Amanda G Fisher, Matthias Merkenschlager, Daniel Ruckert
A deep learning method for replicate-based analysis of chromosome conformation contacts using Siamese neural networks. Nature communications 14 (1) (2023)
Liam McAllan, Damir Baranasic, Sergio Villicaña, Scarlett Brown, Weihua Zhang, Benjamin Lehne, Marco Adamo, Andrew Jenkinson, Mohamed Elkalaawy, Borzoueh Mohammadi, Majid Hashemi, Nadia Fernandes, Nathalie Lambie, Richard Williams, Colette E Christiansen, Youwen Yang, Liudmila Zudina, Vasiliki Lagou, Sili Tan, Juan Castillo-Fernandez, James W D King, Richie Soong, Paul Elliott, James Scott, Inga Prokopenko, Inês Cebola, Marie Loh, Boris Lenhard, Rachel L Batterham, Jordana T Bell, John C Chambers, Jaspal S Kooner, William R Scott
Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes. Nature communications 14 (1) (2023)
Liam McAllan, Damir Baranasic, Sergio Villicaña, Scarlett Brown, Weihua Zhang, Benjamin Lehne, Marco Adamo, Andrew Jenkinson, Mohamed Elkalaawy, Borzoueh Mohammadi, Majid Hashemi, Nadia Fernandes, Nathalie Lambie, Richard Williams, Colette E Christiansen, Youwen Yang, Liudmila Zudina, Vasiliki Lagou, Sili Tan, Juan Castillo-Fernandez, James W D King, Richie Soong, Paul Elliott, James Scott, Inga Prokopenko, Inês Cebola, Marie Loh, Boris Lenhard, Rachel L Batterham, Jordana T Bell, John C Chambers, Jaspal S Kooner, William R Scott
Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes. Nature communications 14 (1) (2023)
Damir Baranasic, Matthias Hörtenhuber, Piotr J Balwierz, Tobias Zehnder, Abdul Kadir Mukarram, Chirag Nepal, Csilla Varnai, Yavor Hadzhiev, Ada Jimenez Gonzalez, Nan Li, Joseph Wragg, Fabio M D'Orazio, Dorde Relic, Mikhail Pachkov, Noelia Díaz, Benjamín Hernández-Rodríguez, Zelin Chen, Marcus Stoiber, Michael X Dong, Irene Stevens, Samuel E Ross, Anne Eagle, Ryan Martin, Oluwapelumi Obasaju, Sepand Rastegar, Alison C McGarvey, Wolfgang Kopp, Emily V Chambers, Dennis Wang, Hyejeong R Kim, Rafael D Acemel, Silvia Naranjo, Maciej Łapiński, Vanessa Chong-Morrison, Sinnakaruppan Mathavan, Bernard Peers, Tatjana Sauka-Spengler, Martin Vingron, Piero Carnici, Uwe Ohler, Scott Allen Lacadie, Jason W Sinclair, Cecilia Lanny Winata, Fredericus J M van Eeden, Juan M Vaquerizas, José Luis Gómez-Skarmeta, Daria Onichtchouk, Ben James Brown, Ozren Bogdanovic, Erik van Nimwegen, Monte Westerfield, Fiona C Wardle, Carsten O Daub, Boris Lenhard, Ferenc Müller
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature genetics 54 (7) (2022)
Andrew M Jobbins, Nejc Haberman, Natalia Artigas, Christopher Amourda, Helen A B Paterson, Sijia Yu, Samuel J I Blackford, Alex Montoya, Marian Dore, Yi-Fang Wang, Alessandro Sardini, Inês Cebola, Johannes Zuber, Sheikh Tamir Rashid, Boris Lenhard, Santiago Vernia
Dysregulated RNA polyadenylation contributes to metabolic impairment in non-alcoholic fatty liver disease. Nucleic acids research 50 (6) (2022)
Mohammad M Karimi, Ya Guo, Xiaokai Cui, Husayn Ahmed Pallikonda, Veronika Horkova, Yi-Fang Wang, Sara Ruiz Gil, Gustavo Rodriguez-Esteban, Irene Robles-Rebollo, Ludovica Bruno, Radina Georgieva, Bhavik Patel, James Elliott, Marian H Dore, Danielle Dauphars, Michael S Krangel, Boris Lenhard, Holger Heyn, Amanda G Fisher, Ondrej Stepanek, Matthias Merkenschlager
The order and logic of CD4 versus CD8 lineage choice and differentiation in mouse thymus. Nature communications 12 (1) (2021)
Bernd B Zeisig, Tsz Kan Fung, Magdalena Zarowiecki, Chiou Tsun Tsai, Huacheng Luo, Boban Stanojevic, Claire Lynn, Anskar Yu-Hung Leung, Jan Zuna, Marketa Zaliova, Martin Bornhauser, Malte von Bonin, Boris Lenhard, Suming Huang, Ghulam J Mufti, Chi Wai Eric So
Functional reconstruction of human AML reveals stem cell origin and vulnerability of treatment-resistant MLL-rearranged leukemia. Science translational medicine 13 (582) (2021)
Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y Leung, Alejandro Aguirre, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoit Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W Wasserman, Francois Parcy, Anthony Mathelier
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. Nucleic acids research (2021)
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J Nash, Marco Ghilotti, Christopher J F Cameron, Matthew Valentine, Yulia A Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, null Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M Luscombe, Mathieu Blanchette, Takeya Kasukawa, Michiel de Hoon, Erik Arner, Boris Lenhard, Charles Plessy, Gonçalo Castelo-Branco, Valerio Orlando, Piero Carnici
Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions. Nature communications 12 (1) (2021)
Felix Daniel Weiss, Lesly Calderon, Yi-Fang Wang, Radina Georgieva, Ya Guo, Nevena Cvetesic, Maninder Kaur, Gopuraja Dharmalingam, Ian D Krantz, Boris Lenhard, Amanda G Fisher, Matthias Merkenschlager
Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin. Nature communications 12 (1) (2021)
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J Nash, Marco Ghilotti, Christopher J F Cameron, Matthew Valentine, Yulia A Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, null Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M Luscombe, Mathieu Blanchette, Takeya Kasukawa, Michiel de Hoon, Erik Arner, Boris Lenhard, Charles Plessy, Gonçalo Castelo-Branco, Valerio Orlando, Piero Carnici
RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions. Nature communications 11 (1) (2020)
Changwei Yu, Nevena Cvetesic, Vincent Hisler, Kapil Gupta, Tao Ye, Emese Gazdag, Luc Negroni, Petra Hajkova, Imre Berger, Boris Lenhard, Ferenc Müller, Stephane D Vincent, Làszlò Tora
TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage. Nature communications 11 (1) (2020)
Chirag Nepal, Yavor Hadzhiev, Piotr J Balwierz, Estefanía Tarifeño-Saldivia, Ryan Cardenas, Joseph W Wragg, Ana-Maria Suzuki, Piero Carnici, Bernard Peers, Boris Lenhard, Jesper B Andersen, Ferenc Müller
Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing. Nature communications 11 (1) (2020)
Samuel H Lewis, Laura Ross, Stevie A Bain, Eleni Pahita, Stephen A Smith, Richard Cordaux, Eric Alexander Miska, Boris Lenhard, Francis Michael Jiggins, Peter Sarkies
------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods. PLoS genetics 16 (6) (2020)
Toni Beltran, Elena Pahita, Subhanita Ghosh, Boris Lenhard, Peter Sarkies
Integrator is recruited to promoter-proximally paused RNA Pol II to generate Caenorhabditis elegans piRNA precursors. The EMBO journal 40 (5) (2020)
Anja Barešić, Alexander Jolyon Nash, Tarik Dahoun, Oliver Howes, Boris Lenhard
Understanding the genetics of neuropsychiatric disorders: the potential role of genomic regulatory blocks. Molecular psychiatry 25 (1) (2019)
Ge Tan, Dimitris Polychronopoulos, Boris Lenhard
CNEr: A toolkit for exploring extreme noncoding conservation. PLoS computational biology 15 (8) (2019)
Matthew D Newton, Benjamin J M Taylor, Rosalie P C Driessen, Leonie Roos, Nevena Cvetesic, Shenaz Allyjaun, Boris Lenhard, Maria Emanuela Cuomo, David S Rueda
DNA stretching induces Cas9 off-target activity. Nature structural & molecular biology 26 (3) (2019)
Nevena Cvetesic, Boris Lenhard
Core promoters across the genome. Nature biotechnology 35 (2) (2018)
Nathan Harmston, Elizabeth Ing-Simmons, Ge Tan, Malcolm Perry, Matthias Merkenschlager, Boris Lenhard
Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation. Nature communications 8 (1) (2017)
Magali Naville, Minaka Ishibashi, Marco Ferg, Hemant Bengani, Silke Rinkwitz, Monika Krecsmarik, Thomas A Hawkins, Stephen W Wilson, Elizabeth Manning, Chandra S R Chilamakuri, David I Wilson, Alexandra Louis, F Lucy Raymond, Sepand Rastegar, Uwe Strähle, Boris Lenhard, Laure Bally-Cuif, Veronica van Heyningen, David R FitzPatrick, Thomas S Becker, Hugues Roest Crollius
Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome. Nature communications 6 (2015)
Ralph Stadhouders, Alba Cico, Tharshana Stephen, Supat Thongjuea, Petros Kolovos, H Irem Baymaz, Xiao Yu, Jeroen Demmers, Karel Bezstarosti, Alex Maas, Vilma Barroca, Christel Kockx, Zeliha Ozgur, Wilfred F J Van IJcken, Marie-Laure Arcangeli, Charlotte Andrieu-Soler, Boris Lenhard, Frank Grosveld, Eric Soler
Control of developmentally primed erythroid genes by combinatorial co-repressor actions. Nature communications 6 (2015)