James M Berger (James Berger)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 33

Top Topics

Endoplasmic Reticulum

Circulating Tumor

Top Venues

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Álvaro de la Gándara, Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Rafael Núñez-Ramírez, James M Berger, Ernesto Arias-Palomo
Molecular basis for transposase activation by a dedicated AAA+ ATPase. Nature 630 (8018) (2024)
Álvaro de la Gándara, Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Rafael Núñez-Ramírez, James M Berger, Ernesto Arias-Palomo
Molecular basis for transposase activation by a dedicated AAA+ ATPase. Nature 630 (8018) (2024)
Álvaro de la Gándara, Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Rafael Núñez-Ramírez, James M Berger, Ernesto Arias-Palomo
Molecular basis for transposase activation by a dedicated AAA+ ATPase. Nature 630 (8018) (2024)
Chuan Liu, Glenn Hauk, Qianyun Yan, James M Berger
Structure of Escherichia coli exonuclease VII. Proceedings of the National Academy of Sciences of the United States of America 121 (5) (2024)
Chuan Liu, Glenn Hauk, Qianyun Yan, James M Berger
Structure of Escherichia coli exonuclease VII. Proceedings of the National Academy of Sciences of the United States of America 121 (5) (2024)
Álvaro de la Gándara, Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Rafael Núñez-Ramírez, James M Berger, Ernesto Arias-Palomo
Molecular basis for transposase activation by a dedicated AAA+ ATPase. Nature 630 (8018) (2024)
Chuan Liu, Glenn Hauk, Qianyun Yan, James M Berger
Structure of Escherichia coli exonuclease VII. Proceedings of the National Academy of Sciences of the United States of America 121 (5) (2024)
Álvaro de la Gándara, Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Rafael Núñez-Ramírez, James M Berger, Ernesto Arias-Palomo
Molecular basis for transposase activation by a dedicated AAA+ ATPase. Nature 630 (8018) (2024)
Chuan Liu, Glenn Hauk, Qianyun Yan, James M Berger
Structure of Escherichia coli exonuclease VII. Proceedings of the National Academy of Sciences of the United States of America 121 (5) (2024)
Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Álvaro de la Gándara, James M Berger, Ernesto Arias-Palomo
IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings. Nature communications 14 (1) (2023)
Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Álvaro de la Gándara, James M Berger, Ernesto Arias-Palomo
IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings. Nature communications 14 (1) (2023)
Jaeyoon Lee, Meiling Wu, James T Inman, Gundeep Singh, Seong Ha Park, Joyce H Lee, Robert M Fulbright, Yifeng Hong, Joshua Jeong, James M Berger, Michelle D Wang
Chromatinization modulates topoisomerase II processivity. Nature communications 14 (1) (2023)
Afif F Bandak, Tim R Blower, Karin C Nitiss, Viraj Shah, John L Nitiss, James M Berger
Using energy to go downhill-a genoprotective role for ATPase activity in DNA topoisomerase II. Nucleic acids research (2023)
Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Álvaro de la Gándara, James M Berger, Ernesto Arias-Palomo
IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings. Nature communications 14 (1) (2023)
Jaeyoon Lee, Meiling Wu, James T Inman, Gundeep Singh, Seong Ha Park, Joyce H Lee, Robert M Fulbright, Yifeng Hong, Joshua Jeong, James M Berger, Michelle D Wang
Chromatinization Modulates Topoisomerase II Processivity. bioRxiv : the preprint server for biology (2023)
Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Álvaro de la Gándara, James M Berger, Ernesto Arias-Palomo
IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings. Nature communications 14 (1) (2023)
Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Álvaro de la Gándara, James M Berger, Ernesto Arias-Palomo
IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings. Nature communications 14 (1) (2023)
Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Álvaro de la Gándara, James M Berger, Ernesto Arias-Palomo
IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings. Nature communications 14 (1) (2023)
Afif F Bandak, Tim R Blower, Karin C Nitiss, Viraj Shah, John L Nitiss, James M Berger
Using energy to go downhill - a genoprotective role for ATPase activity in DNA topoisomerase II. bioRxiv : the preprint server for biology (2023)
Tung T Le, Meiling Wu, Joyce H Lee, Neti Bhatt, James T Inman, James M Berger, Michelle D Wang
Etoposide promotes DNA loop trapping and barrier formation by topoisomerase II. Nature chemical biology (2023)
Afif F Bandak, Tim R Blower, Karin C Nitiss, Raveena Gupta, Albert Y Lau, Ria Guha, John L Nitiss, James M Berger
Naturally mutagenic sequence diversity in a human type II topoisomerase. Proceedings of the National Academy of Sciences of the United States of America 120 (28) (2023)
Joshua Jeong, Joyce H Lee, Claudia C Carcamo, Matthew W Parker, James M Berger
DNA-Stimulated Liquid-Liquid phase separation by eukaryotic topoisomerase ii modulates catalytic function. eLife 11 (2022)
Yu Imai, Glenn Hauk, Jeffrey Quigley, Libang Liang, Sangkeun Son, Meghan Ghiglieri, Michael F Gates, Madeleine Morrissette, Negar Shahsavari, Samantha Niles, Donna Baldisseri, Chandrashekhar Honrao, Xiaoyu Ma, Jason J Guo, James M Berger, Kim Lewis
Evybactin is a DNA gyrase inhibitor that selectively kills Mycobacterium tuberculosis. Nature chemical biology 18 (11) (2022)
Amy J Fernandez, James M Berger
Mechanisms of hexameric helicases. Critical reviews in biochemistry and molecular biology 56 (6) (2021)
Corentin Claeys Bouuaert, Sam E Tischfield, Stephen Pu, Eleni P Mimitou, Ernesto Arias-Palomo, James M Berger, Scott Keeney
Structural and functional characterization of the Spo11 core complex. Nature structural & molecular biology 28 (1) (2021)
Neha Puri, Amy J Fernandez, Valerie L O'Shea Murray, Sarah McMillan, James L Keck, James M Berger
The molecular coupling between substrate recognition and ATP turnover in a AAA+ hexameric helicase loader. eLife 10 (2021)
Matthew W Parker, Jonchee A Kao, Alvin Huang, James M Berger, Michael R Botchan
Molecular determinants of phase separation for Drosophila DNA replication licensing factors. eLife 10 (2021)
Nicole Stantial, Anna Rogojina, Matthew Gilbertson, Yilun Sun, Hannah N Miles, Samantha Shaltz, James M Berger, Karin C Nitiss, Sue Jinks-Robertson, John L Nitiss
Trapped topoisomerase II initiates formation of de novo duplications via the nonhomologous end-joining pathway in yeast. Proceedings of the National Academy of Sciences of the United States of America 117 (43) (2020)
Matthew W Parker, Maren Bell, Mustafa Mir, Jonchee A Kao, Xavier Darzacq, Michael R Botchan, James M Berger
A new class of disordered elements controls DNA replication through initiator self-assembly. eLife 8 (2019)
Joyce H Lee, James M Berger
Cell Cycle-Dependent Control and Roles of DNA Topoisomerase II. Genes 10 (11) (2019)
Michael R Lawson, James M Berger
Tuning the sequence specificity of a transcription terminator. Current genetics 65 (3) (2019)
Timothy J Wendorff, James M Berger
Topoisomerase VI senses and exploits both DNA crossings and bends to facilitate strand passage. eLife 7 (2018)
Franziska Bleichert, Michael R Botchan, James M Berger
Mechanisms for initiating cellular DNA replication. Science (New York, N.Y.) 355 (6327) (2017)