Jeffrey E Barrick

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 51

Top Topics

Escherichia Coli

Dna Methylation

Top Venues

bioRxiv : the preprint server for biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Matthew J McGuffie, Jeffrey E Barrick
Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. PloS one 19 (5) (2024)
Noor Radde, Genevieve A Mortensen, Diya Bhat, Shireen Shah, Joseph J Clements, Sean P Leonard, Matthew J McGuffie, Dennis M Mishler, Jeffrey E Barrick
Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology. Nature communications 15 (1) (2024)
Matthew J McGuffie, Jeffrey E Barrick
Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. PloS one 19 (5) (2024)
Noor Radde, Genevieve A Mortensen, Diya Bhat, Shireen Shah, Joseph J Clements, Sean P Leonard, Matthew J McGuffie, Dennis M Mishler, Jeffrey E Barrick
Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology. bioRxiv : the preprint server for biology (2024)
Matthew J McGuffie, Jeffrey E Barrick
Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. PloS one 19 (5) (2024)
Cameron T Roots, Jeffrey E Barrick
CryptKeeper: a negative design tool for reducing unintentional gene expression in bacteria. bioRxiv : the preprint server for biology (2024)
Noor Radde, Genevieve A Mortensen, Diya Bhat, Shireen Shah, Joseph J Clements, Sean P Leonard, Matthew J McGuffie, Dennis M Mishler, Jeffrey E Barrick
Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology. bioRxiv : the preprint server for biology (2024)
Patrick J Lariviere, A H M Zuberi Ashraf, Lucio Navarro-Escalante, Sean P Leonard, Laurel G Miller, Nancy A Moran, Jeffrey E Barrick
One-step genome engineering in bee gut bacterial symbionts. mBio (2024)
Noor Radde, Genevieve A Mortensen, Diya Bhat, Shireen Shah, Joseph J Clements, Sean P Leonard, Matthew J McGuffie, Dennis M Mishler, Jeffrey E Barrick
Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology. Nature communications 15 (1) (2024)
Matthew J McGuffie, Jeffrey E Barrick
Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. PloS one 19 (5) (2024)
Noor Radde, Genevieve A Mortensen, Diya Bhat, Shireen Shah, Joseph J Clements, Sean P Leonard, Matthew J McGuffie, Dennis M Mishler, Jeffrey E Barrick
Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology. bioRxiv : the preprint server for biology (2024)
Isaac Gifford, Gabriel A Suárez, Jeffrey E Barrick
Evolution recovers the fitness of Acinetobacter baylyi strains with large deletions through mutations in deletion-specific targets and global post-transcriptional regulators. PLoS genetics 20 (9) (2024)
Patrick J Lariviere, A H M Zuberi Ashraf, Lucio Navarro-Escalante, Sean P Leonard, Laurel G Miller, Nancy A Moran, Jeffrey E Barrick
One-step genome engineering in bee gut bacterial symbionts. mBio (2024)
Noor Radde, Genevieve A Mortensen, Diya Bhat, Shireen Shah, Joseph J Clements, Sean P Leonard, Matthew J McGuffie, Dennis M Mishler, Jeffrey E Barrick
Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology. Nature communications 15 (1) (2024)
Katherine M Elston, Laila E Phillips, Sean P Leonard, Eleanor Young, Jo-Anne C Holley, Tasneem Ahsanullah, Braydin McReynolds, Nancy A Moran, Jeffrey E Barrick
The Pathfinder plasmid toolkit for genetically engineering newly isolated bacteria enables the study of Drosophila -colonizing Orbaceae . bioRxiv : the preprint server for biology (2023)
B W Thuronyi, Erika A DeBenedictis, Jeffrey E Barrick
No assembly required: Time for stronger, simpler publishing standards for DNA sequences. PLoS biology 21 (11) (2023)
Patrick J Lariviere, A H M Zuberi Ashraf, Sean P Leonard, Laurel G Miller, Nancy A Moran, Jeffrey E Barrick
Single-step genome engineering in the bee gut symbiont Snodgrassella alvi . bioRxiv : the preprint server for biology (2023)
Matthew J McGuffie, Jeffrey E Barrick
Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. bioRxiv : the preprint server for biology (2023)
Katherine M Elston, Laila E Phillips, Sean P Leonard, Eleanor Young, Jo-Anne C Holley, Tasneem Ahsanullah, Braydin McReynolds, Nancy A Moran, Jeffrey E Barrick
Correction to: The Pathfinder plasmid toolkit for genetically engineering newly isolated bacteria enables the study of Drosophila-colonizing Orbaceae. ISME communications 3 (1) (2023)
Katherine M Elston, Laila E Phillips, Sean P Leonard, Eleanor Young, Jo-Anne C Holley, Tasneem Ahsanullah, Braydin McReynolds, Nancy A Moran, Jeffrey E Barrick
The Pathfinder plasmid toolkit for genetically engineering newly isolated bacteria enables the study of Drosophila -colonizing Orbaceae . bioRxiv : the preprint server for biology (2023)
Matthew J McGuffie, Jeffrey E Barrick
Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. bioRxiv : the preprint server for biology (2023)
Katherine M Elston, Laila E Phillips, Sean P Leonard, Eleanor Young, Jo-Anne C Holley, Tasneem Ahsanullah, Braydin McReynolds, Nancy A Moran, Jeffrey E Barrick
The Pathfinder plasmid toolkit for genetically engineering newly isolated bacteria enables the study of Drosophila-colonizing Orbaceae. ISME communications 3 (1) (2023)
Katherine M Elston, Laila E Phillips, Sean P Leonard, Eleanor Young, Jo-Anne C Holley, Tasneem Ahsanullah, Braydin McReynolds, Nancy A Moran, Jeffrey E Barrick
The Pathfinder plasmid toolkit for genetically engineering newly isolated bacteria enables the study of Drosophila -colonizing Orbaceae . bioRxiv : the preprint server for biology (2023)
Matthew J McGuffie, Jeffrey E Barrick
Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. bioRxiv : the preprint server for biology (2023)
Katherine M Elston, Gerald P Maeda, Julie Perreau, Jeffrey E Barrick
Addressing the challenges of symbiont-mediated RNAi in aphids. PeerJ 11 (2023)
Katherine M Elston, Gerald P Maeda, Julie Perreau, Jeffrey E Barrick
Addressing the challenges of symbiont-mediated RNAi in aphids. PeerJ 11 (2023)
Matthew J McGuffie, Jeffrey E Barrick
Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. bioRxiv : the preprint server for biology (2023)
Camilo Gómez-Garzón, Jeffrey E Barrick, Shelley M Payne
Disentangling the Evolutionary History of Feo, the Major Ferrous Iron Transport System in Bacteria. mBio (2022)
Gabriel R Burks, Lehan Yao, Falon C Kalutantirige, Kyle J Gray, Elizabeth Bello, Shreyas Rajagopalan, Sarah B Bialik, Jeffrey E Barrick, Marianne Alleyne, Qian Chen, Charles M Schroeder
Electron Tomography and Machine Learning for Understanding the Highly Ordered Structure of Leafhopper Brochosomes. Biomacromolecules 24 (1) (2022)
Gabriel R Burks, Lehan Yao, Falon C Kalutantirige, Kyle J Gray, Elizabeth Bello, Shreyas Rajagopalan, Sarah B Bialik, Jeffrey E Barrick, Marianne Alleyne, Qian Chen, Charles M Schroeder
Electron Tomography and Machine Learning for Understanding the Highly Ordered Structure of Leafhopper Brochosomes. Biomacromolecules 24 (1) (2022)
Gabriel R Burks, Lehan Yao, Falon C Kalutantirige, Kyle J Gray, Elizabeth Bello, Shreyas Rajagopalan, Sarah B Bialik, Jeffrey E Barrick, Marianne Alleyne, Qian Chen, Charles M Schroeder
Electron Tomography and Machine Learning for Understanding the Highly Ordered Structure of Leafhopper Brochosomes. Biomacromolecules 24 (1) (2022)
Ruth Rodríguez-Pastor, Yarden Shafran, Nadav Knossow, Ricardo Gutiérrez, Shimon Harrus, Luis Zaman, Richard E Lenski, Jeffrey E Barrick, Hadas Hawlena
A road map for in vivo evolution experiments with blood-borne parasitic microbes. Molecular ecology resources 22 (8) (2022)
Gabriel R Burks, Lehan Yao, Falon C Kalutantirige, Kyle J Gray, Elizabeth Bello, Shreyas Rajagopalan, Sarah B Bialik, Jeffrey E Barrick, Marianne Alleyne, Qian Chen, Charles M Schroeder
Electron Tomography and Machine Learning for Understanding the Highly Ordered Structure of Leafhopper Brochosomes. Biomacromolecules (2022)
Patrick J Lariviere, Sean P Leonard, Richard D Horak, J Elijah Powell, Jeffrey E Barrick
Honey bee functional genomics using symbiont-mediated RNAi. Nature protocols (2022)
Joshua M Borin, Sarit Avrani, Jeffrey E Barrick, Katherine L Petrie, Justin R Meyer
Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance. Proceedings of the National Academy of Sciences of the United States of America 118 (23) (2021)
Julie Perreau, Devki J Patel, Hanna Anderson, Gerald P Maeda, Katherine M Elston, Jeffrey E Barrick, Nancy A Moran
Vertical Transmission at the Pathogen-Symbiont Interface: Serratia symbiotica and Aphids. mBio 12 (2) (2021)
Jessika Consuegra, Joël Gaffé, Richard E Lenski, Thomas Hindré, Jeffrey E Barrick, Olivier Tenaillon, Dominique Schneider
Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria. Nature communications 12 (1) (2021)
Matthew J McGuffie, Jeffrey E Barrick
pLannotate: engineered plasmid annotation. Nucleic acids research 49 (W1) (2021)
Kyle J Card, Misty D Thomas, Joseph L Graves, Jeffrey E Barrick, Richard E Lenski
Genomic evolution of antibiotic resistance is contingent on genetic background following a long-term experiment with Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 118 (5) (2021)
Katherine M Elston, Julie Perreau, Gerald P Maeda, Nancy A Moran, Jeffrey E Barrick
Engineering a Culturable Serratia symbiotica Strain for Aphid Paratransgenesis. Applied and environmental microbiology (2020)
Sean P Leonard, J Elijah Powell, Jiri Perutka, Peng Geng, Luke C Heckmann, Richard D Horak, Bryan W Davies, Andrew D Ellington, Jeffrey E Barrick, Nancy A Moran
Engineered symbionts activate honey bee immunity and limit pathogens. Science (New York, N.Y.) 367 (6477) (2020)
Zachary D Blount, Rohan Maddamsetti, Nkrumah A Grant, Sumaya T Ahmed, Tanush Jagdish, Jessica A Baxter, Brooke A Sommerfeld, Alice Tillman, Jeremy Moore, Joan L Slonczewski, Jeffrey E Barrick, Richard E Lenski
Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment. eLife 9 (2020)
Xue Zhang, Daniel E Deatherage, Hao Zheng, Stratton J Georgoulis, Jeffrey E Barrick
Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteria. Nature communications 10 (1) (2019)
Alejandro E Gutierrez, Prachi Shah, Abigail E Rex, Tien C Nguyen, Saamiha P Kenkare, Jeffrey E Barrick, Dennis M Mishler
Bioassay for Determining the Concentrations of Caffeine and Individual Methylxanthines in Complex Samples. Applied and environmental microbiology 85 (23) (2019)
Peng Geng, Sean P Leonard, Dennis M Mishler, Jeffrey E Barrick
Synthetic Genome Defenses against Selfish DNA Elements Stabilize Engineered Bacteria against Evolutionary Failure. ACS synthetic biology 8 (3) (2019)
Dacia Leon, Simon D'Alton, Erik M Quandt, Jeffrey E Barrick
Innovation in an E. coli evolution experiment is contingent on maintaining adaptive potential until competition subsides. PLoS genetics 14 (4) (2018)
Sean P Leonard, Jiri Perutka, J Elijah Powell, Peng Geng, Darby D Richhart, Michelle Byrom, Shaunak Kar, Bryan W Davies, Andrew D Ellington, Nancy A Moran, Jeffrey E Barrick
Genetic Engineering of Bee Gut Microbiome Bacteria with a Toolkit for Modular Assembly of Broad-Host-Range Plasmids. ACS synthetic biology 7 (5) (2018)
Gabriel A Suárez, Brian A Renda, Aurko Dasgupta, Jeffrey E Barrick
Reduced Mutation Rate and Increased Transformability of Transposon-Free Acinetobacter baylyi ADP1-ISx. Applied and environmental microbiology 83 (17) (2017)
Brian A Renda, Cindy Chan, Kristin N Parent, Jeffrey E Barrick
Emergence of a Competence-Reducing Filamentous Phage from the Genome of Acinetobacter baylyi ADP1. Journal of bacteriology 198 (23) (2016)
Erik M Quandt, Jimmy Gollihar, Zachary D Blount, Andrew D Ellington, George Georgiou, Jeffrey E Barrick
Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment. eLife 4 (2015)
Erik M Quandt, Ryan M Summers, Mani V Subramanian, Jeffrey E Barrick
Draft Genome Sequence of the Bacterium Pseudomonas putida CBB5, Which Can Utilize Caffeine as a Sole Carbon and Nitrogen Source. Genome announcements 3 (3) (2015)