Jian-Quan Liu (J Liu, Jianquan Liu)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 76

Top Topics

Dna Methylation

Arabidopsis Thaliana

Top Venues

Molecular ecology

Nature communications

Molecular ecology resources

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Peng-Chuan Sun, Zhiqiang Lu, Zhenyue Wang, Shang Wang, Kexin Zhao, Dong Mei, Jiao Yang, Yongzhi Yang, Susanne S Renner, Jian-Quan Liu
Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Peng-Chuan Sun, Zhiqiang Lu, Zhenyue Wang, Shang Wang, Kexin Zhao, Dong Mei, Jiao Yang, Yongzhi Yang, Susanne S Renner, Jian-Quan Liu
Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Meng-Yun Guo, Yingjun Yao, Kangqun Yin, Luna Tan, Meng Liu, Jing Hou, Han Zhang, Ruyun Liang, Xinran Zhang, Heng Yang, Xiaoxiao Chen, Jinrui Tan, Yan Song, Shangling Lou, Liyang Chen, Xuejing Liu, Si Tang, Yongqi Hu, Jin Yan, Wensen Fu, Kai Yang, Ruijia Zhang, Xuerui Li, Yao Liu, Zhen Yan, Wei Liu, Yu Han, Jian-Quan Liu, Kang-Shan Mao, Huanhuan Liu
ACBP4-WRKY70-RAP2.12 module positively regulates submergence-induced hypoxia response in Arabidopsis thaliana. Journal of integrative plant biology 66 (6) (2024)
Yanyu Chen, Landi Feng, Hao Lin, Jian-Quan Liu, Quan-Jun Hu
Chromosome-level genome assembly of Helwingia omeiensis: the first genome in the family Helwingiaceae. Scientific data 11 (1) (2024)
Peng-Chuan Sun, Zhiqiang Lu, Zhenyue Wang, Shang Wang, Kexin Zhao, Dong Mei, Jiao Yang, Yongzhi Yang, Susanne S Renner, Jian-Quan Liu
Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Longfa Fang, Mingyu Li, Jia Zhang, Chenglin Jia, Yuqing Qiang, Xiaojuan He, Tao Liu, Qiang Zhou, Dong Luo, Yuling Han, Zhen Li, Wenxian Liu, Yongzhi Yang, Jian-Quan Liu, Zhipeng Liu
Chromosome-level genome assembly of Pedicularis kansuensis illuminates genome evolution of facultative parasitic plant. Molecular ecology resources (2024)
Peng-Chuan Sun, Zhiqiang Lu, Zhenyue Wang, Shang Wang, Kexin Zhao, Dong Mei, Jiao Yang, Yongzhi Yang, Susanne S Renner, Jian-Quan Liu
Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Meng-Yun Guo, Yingjun Yao, Kangqun Yin, Luna Tan, Meng Liu, Jing Hou, Han Zhang, Ruyun Liang, Xinran Zhang, Heng Yang, Xiaoxiao Chen, Jinrui Tan, Yan Song, Shangling Lou, Liyang Chen, Xuejing Liu, Si Tang, Yongqi Hu, Jin Yan, Wensen Fu, Kai Yang, Ruijia Zhang, Xuerui Li, Yao Liu, Zhen Yan, Wei Liu, Yu Han, Jian-Quan Liu, Kang-Shan Mao, Huanhuan Liu
ACBP4-WRKY70-RAP2.12 module positively regulates submergence-induced hypoxia response in Arabidopsis thaliana. Journal of integrative plant biology 66 (6) (2024)
Peng-Chuan Sun, Zhiqiang Lu, Zhenyue Wang, Shang Wang, Kexin Zhao, Dong Mei, Jiao Yang, Yongzhi Yang, Susanne S Renner, Jian-Quan Liu
Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Yongjun Fang, Xiaohu Xiao, Jishan Lin, Qiang Lin, Jiang Wang, Kaiye Liu, Zhonghua Li, Jianfeng Xing, Zhenglin Liu, Baiyu Wang, Yiying Qi, Xiangyu Long, Xia Zeng, Yanshi Hu, Jiyan Qi, Yunxia Qin, Jianghua Yang, Yi Zhang, Shengmin Zhang, De Ye, Ji-Sen Zhang, Jian-Quan Liu, Chaorong Tang
Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution. Nature communications 15 (1) (2024)
Yongjun Fang, Xiaohu Xiao, Jishan Lin, Qiang Lin, Jiang Wang, Kaiye Liu, Zhonghua Li, Jianfeng Xing, Zhenglin Liu, Baiyu Wang, Yiying Qi, Xiangyu Long, Xia Zeng, Yanshi Hu, Jiyan Qi, Yunxia Qin, Jianghua Yang, Yi Zhang, Shengmin Zhang, De Ye, Ji-Sen Zhang, Jian-Quan Liu, Chaorong Tang
Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution. Nature communications 15 (1) (2024)
Meng-Yun Guo, Yingjun Yao, Kangqun Yin, Luna Tan, Meng Liu, Jing Hou, Han Zhang, Ruyun Liang, Xinran Zhang, Heng Yang, Xiaoxiao Chen, Jinrui Tan, Yan Song, Shangling Lou, Liyang Chen, Xuejing Liu, Si Tang, Yongqi Hu, Jin Yan, Wensen Fu, Kai Yang, Ruijia Zhang, Xuerui Li, Yao Liu, Zhen Yan, Wei Liu, Yu Han, Jian-Quan Liu, Kang-Shan Mao, Huanhuan Liu
ACBP4-WRKY70-RAP2.12 module positively regulates submergence-induced hypoxia response in Arabidopsis thaliana. Journal of integrative plant biology (2024)
Mark A Chapman, Simon J Hiscock, Janis Antonovics, Spencer C H Barrett, Adrian Christopher Brennan, Jian-Quan Liu
Reflections on the life and work of Richard Abbott (1945-2024). Molecular ecology (2024)
Yanyu Chen, Landi Feng, Hao Lin, Jian-Quan Liu, Quan-Jun Hu
Chromosome-level genome assembly of Helwingia omeiensis: the first genome in the family Helwingiaceae. Scientific data 11 (1) (2024)
Longfa Fang, Mingyu Li, Jia Zhang, Chenglin Jia, Yuqing Qiang, Xiaojuan He, Tao Liu, Qiang Zhou, Dong Luo, Yuling Han, Zhen Li, Wenxian Liu, Yongzhi Yang, Jian-Quan Liu, Zhipeng Liu
Chromosome-level genome assembly of Pedicularis kansuensis illuminates genome evolution of facultative parasitic plant. Molecular ecology resources 24 (5) (2024)
Yanyu Chen, Landi Feng, Hao Lin, Jian-Quan Liu, Quan-Jun Hu
Chromosome-level genome assembly of Helwingia omeiensis: the first genome in the family Helwingiaceae. Scientific data 11 (1) (2024)
Yongjun Fang, Xiaohu Xiao, Jishan Lin, Qiang Lin, Jiang Wang, Kaiye Liu, Zhonghua Li, Jianfeng Xing, Zhenglin Liu, Baiyu Wang, Yiying Qi, Xiangyu Long, Xia Zeng, Yanshi Hu, Jiyan Qi, Yunxia Qin, Jianghua Yang, Yi Zhang, Shengmin Zhang, De Ye, Ji-Sen Zhang, Jian-Quan Liu, Chaorong Tang
Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution. Nature communications 15 (1) (2024)
Mark A Chapman, Simon J Hiscock, Janis Antonovics, Spencer C H Barrett, Adrian Christopher Brennan, Jian-Quan Liu
Reflections on the life and work of Richard Abbott (1945-2024). Molecular ecology 33 (14) (2024)
Meng-Yun Guo, Yingjun Yao, Kangqun Yin, Luna Tan, Meng Liu, Jing Hou, Han Zhang, Ruyun Liang, Xinran Zhang, Heng Yang, Xiaoxiao Chen, Jinrui Tan, Yan Song, Shangling Lou, Liyang Chen, Xuejing Liu, Si Tang, Yongqi Hu, Jin Yan, Wensen Fu, Kai Yang, Ruijia Zhang, Xuerui Li, Yao Liu, Zhen Yan, Wei Liu, Yu Han, Jian-Quan Liu, Kang-Shan Mao, Huanhuan Liu
ACBP4-WRKY70-RAP2.12 module positively regulates submergence-induced hypoxia response in Arabidopsis thaliana. Journal of integrative plant biology 66 (6) (2024)
Minghui Kang, Haolin Wu, Huanhuan Liu, Wenyu Liu, Mingjia Zhu, Yu Han, Wei Liu, Chunlin Chen, Yan Song, Luna Tan, Kangqun Yin, Yusen Zhao, Zhen Yan, Shangling Lou, Yanjun Zan, Jian-Quan Liu
The pan-genome and local adaptation of Arabidopsis thaliana. Nature communications 14 (1) (2023)
Wenjie Mu, Kexin Li, Yongzhi Yang, Adina Breiman, Jiao Yang, Ying Wu, Mingjia Zhu, Shuai Wang, Pilar Catalan, Eviatar Nevo, Jian-Quan Liu
Subgenomic stability of progenitor genomes during repeated allotetraploid origins of the same grass Brachypodium hybridum. Molecular biology and evolution (2023)
Donglei Wang, Yongshuai Sun, Weixiao Lei, Hui Zhu, Ji Wang, Hao Bi, Shuo Feng, Jian-Quan Liu, Dafu Ru
Backcrossing to different parents produced two distinct hybrid species. Heredity (2023)
Dan G Bock, Jian-Quan Liu, Polina Yu Novikova, Loren H Rieseberg
Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular ecology 32 (6) (2023)
Ying Wu, Jiao Yang, Yongzhi Yang, Jian-Quan Liu
The genome sequence and demographic history of Przewalskia tangutica (Solanaceae), an endangered alpine plant on the Qinghai-Tibet Plateau. DNA research : an international journal for rapid publication of reports on genes and genomes (2023)
Ying Li, Zhimin Niu, Mingjia Zhu, Zhenyue Wang, Renping Xu, Minjie Li, Zeyu Zheng, Zhiqiang Lu, Congcong Dong, Hongyin Hu, Yingbo Yang, Ying Wu, Dandan Wang, Jinli Yang, Jin Zhang, Dongshi Wan, Richard Abbott, Jian-Quan Liu, Yongzhi Yang
Multi-omics data provide insight into the adaptation of the glasshouse plant Rheum nobile to the alpine subnival zone. Communications biology 6 (1) (2023)
Xinfeng Liu, Wenyu Liu, Johannes A Lenstra, Zeyu Zheng, Xiaoyun Wu, Jiao Yang, Bowen Li, Yongzhi Yang, Qiang Qiu, Hongyu Liu, Kexin Li, Chunnian Liang, Xian Guo, Xiaoming Ma, Richard J Abbott, Minghui Kang, Ping Yan, Jian-Quan Liu
Evolutionary origin of genomic structural variations in domestic yaks. Nature communications 14 (1) (2023)
Huiying Shang, David L Field, Ovidiu Paun, Martha Rendón-Anaya, Jaqueline Hess, Claus Vogl, Jian-Quan Liu, Pär K Ingvarsson, Christian Lexer, Thibault Leroy
Drivers of genomic landscapes of differentiation across a Populus divergence gradient. Molecular ecology (2023)
Jiao Yang, Ying Wu, Pan Zhang, Jianxiang Ma, Ying Jun Yao, Yan Lin Ma, Lei Zhang, Yongzhi Yang, Chang-Ming Zhao, Jihua Wu, Xiangwen Fang, Jian-Quan Liu
Multiple independent losses of the biosynthetic pathway for two tropane alkaloids in the Solanaceae family. Nature communications 14 (1) (2023)
Dan G Bock, Jian-Quan Liu, Polina Yu Novikova, Loren H Rieseberg
Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular ecology 32 (6) (2023)
Brian J Sanderson, Diksha Ghambir, Guanqiao Feng, Nan Hu, Quentin C Cronk, Diana M Percy, Francisco Molina Freaner, Matthew G Johnson, Lawrence B Smart, Ken Keefover-Ring, Tongming Yin, Tao Ma, Stephen P DiFazio, Jian-Quan Liu, Matthew S Olson
Phylogenomics reveals patterns ancient hybridization and differential diversification that contribute to phylogenetic conflict in willows, poplars, and close relatives. Systematic biology (2023)
Congcong Dong, Shang Wang, Han Zhang, Jian-Quan Liu, Minjie Li
Karyotype evolution of the Asterids insights from the first genome sequences of the family Cornaceae. DNA research : an international journal for rapid publication of reports on genes and genomes 30 (1) (2023)
Hong Wu, Zefu Wang, Yuxing Zhang, Laurent Alain François Frantz, Christian Roos, David M Irwin, Chenglin Zhang, Xuefeng Liu, Dong-Dong Wu, Song Huang, Tongtong Gu, Jian-Quan Liu, Li Yu
Hybrid origin of a primate, the gray snub-nosed monkey. Science (New York, N.Y.) 380 (6648) (2023)
Dan G Bock, Jian-Quan Liu, Polina Yu Novikova, Loren H Rieseberg
Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular ecology 32 (6) (2023)
Bao-Lin Zhang, Wu Chen, Zefu Wang, Wei Pang, Meng-Ting Luo, Sheng Wang, Yong Shao, Wen-Qiang He, Yuan Deng, Long Zhou, Jiawei Chen, Min-Min Yang, Yajiang Wu, Lu Wang, Hugo Fernández-Bellon, Sandra Molloy, Hélène Meunier, Fanélie Wanert, Lukas F K Kuderna, Tomas Marques-Bonet, Christian Roos, Xiao-Guang Qi, Ming Li, Zhijin Liu, Mikkel Heide Schierup, David N Cooper, Jian-Quan Liu, Yong-Tang Zheng, Guo-Jie Zhang, Dong-Dong Wu
Comparative genomics reveals the hybrid origin of a macaque group. Science advances 9 (22) (2023)
Hao Lin, Yingjun Yao, Pengchuan Sun, Landi Feng, Shuo Wang, Yumeng Ren, Xi Yu, Zhengxiang Xi, Jian-Quan Liu
Haplotype-resolved genomes of two buckwheat crops provide insights into their contrasted rutin concentrations and reproductive systems. BMC biology 21 (1) (2023)
Jiao Yang, Ying Wu, Pan Zhang, Jianxiang Ma, Ying Jun Yao, Yan Lin Ma, Lei Zhang, Yongzhi Yang, Chang-Ming Zhao, Jihua Wu, Xiangwen Fang, Jian-Quan Liu
Multiple independent losses of the biosynthetic pathway for two tropane alkaloids in the Solanaceae family. Nature communications 14 (1) (2023)
Ying Li, Zhimin Niu, Mingjia Zhu, Zhenyue Wang, Renping Xu, Minjie Li, Zeyu Zheng, Zhiqiang Lu, Congcong Dong, Hongyin Hu, Yingbo Yang, Ying Wu, Dandan Wang, Jinli Yang, Jin Zhang, Dongshi Wan, Richard Abbott, Jian-Quan Liu, Yongzhi Yang
Multi-omics data provide insight into the adaptation of the glasshouse plant Rheum nobile to the alpine subnival zone. Communications biology 6 (1) (2023)
Dan G Bock, Jian-Quan Liu, Polina Yu Novikova, Loren H Rieseberg
Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular ecology (2023)
Congcong Dong, Shang Wang, Han Zhang, Jian-Quan Liu, Minjie Li
Karyotype evolution of the Asterids insights from the first genome sequences of the family Cornaceae. DNA research : an international journal for rapid publication of reports on genes and genomes 30 (1) (2023)
Jiao Yang, Ying Wu, Pan Zhang, Jianxiang Ma, Ying Jun Yao, Yan Lin Ma, Lei Zhang, Yongzhi Yang, Chang-Ming Zhao, Jihua Wu, Xiangwen Fang, Jian-Quan Liu
Multiple independent losses of the biosynthetic pathway for two tropane alkaloids in the Solanaceae family. Nature communications 14 (1) (2023)
Zefu Wang, Minghui Kang, Jia-Liang Li, Zhiyang Zhang, Yufei Wang, Chunlin Chen, Yongzhi Yang, Jian-Quan Liu
Genomic evidence for homoploid hybrid speciation between ancestors of two different genera. Nature communications 13 (1) (2022)
Yang Liu, Sibo Wang, Linzhou Li, Ting Yang, Shanshan Dong, Tong Wei, Sheng-Dan Wu, Yongbo Liu, Yiqing Gong, Xiuyan Feng, Jianchao Ma, Guanxiao Chang, Jinling Huang, Yong Yang, Hongli Wang, Min Liu, Yan Xu, Hongping Liang, Jin Yu, Yuqing Cai, Zhaowu Zhang, Yannan Fan, Weixue Mu, Sunil Kumar Sahu, Shuchun Liu, Xiaoan Lang, Leilei Yang, Na Li, Sadaf Habib, Yongqiong Yang, Anders Jan Lindström, Pei Liang, Bernard Goffinet, Sumaira Zaman, Jill L Wegrzyn, Dexiang Li, Jian Liu, Jie Cui, Eva Christina Sonnenschein, Xiao-Bo Wang, Jue Ruan, Jia-Yu Xue, Zhu-Qing Shao, Chi Song, Guangyi Fan, Zhen Li, Liangsheng Zhang, Jian-Quan Liu, Zhong-Jian Liu, Yuan-Nian Jiao, Xiao-Quan Wang, Hong Wu, Ertao Wang, Michael Lisby, Huanming Yang, Jian Wang, Xin Liu, Xue Liu, Nan Li, Pamela S Soltis, Yves Van de Peer, Douglas Edward Soltis, Xun Gong, Huan Liu, Shou-Zhou Zhang
The Cycas genome and the early evolution of seed plants. Nature plants 8 (4) (2022)
Yazhen Ma, Xingxing Mao, Ji Wang, Lei Zhang, Yuanzhong Jiang, Yuying Geng, Tao Ma, Liming Cai, Shuangquan Huang, Pete Hollingsworth, Kangshan Mao, Minghui Kang, Yiling Li, Wenlu Yang, Haolin Wu, Yang Chen, Charles C Davis, Nawal Shrestha, Richard H Ree, Zhenxiang Xi, Quan-Jun Hu, Richard I Milne, Jian-Quan Liu
Pervasive hybridization during evolutionary radiation of Rhododendron subgenus Hymenanthes in mountains of southwest China. National science review 9 (12) (2022)
Yazhen Ma, Xingxing Mao, Ji Wang, Lei Zhang, Yuanzhong Jiang, Yuying Geng, Tao Ma, Liming Cai, Shuangquan Huang, Pete Hollingsworth, Kangshan Mao, Minghui Kang, Yiling Li, Wenlu Yang, Haolin Wu, Yang Chen, Charles C Davis, Nawal Shrestha, Richard H Ree, Zhenxiang Xi, Quan-Jun Hu, Richard I Milne, Jian-Quan Liu
Pervasive hybridization during evolutionary radiation of Rhododendron subgenus Hymenanthes in mountains of southwest China. National science review 9 (12) (2022)
Congcong Dong, Shang Wang, Han Zhang, Jian-Quan Liu, Minjie Li
Karyotype evolution of the Asterids insights from the first genome sequences of the family Cornaceae. DNA research : an international journal for rapid publication of reports on genes and genomes (2022)
Shangling Lou, Xiang Guo, Lian Liu, Yan Song, Lei Zhang, Yuanzhong Jiang, Lushui Zhang, Peng-Chuan Sun, Bao Liu, Shaofei Tong, Ningning Chen, Meng Liu, Han Zhang, Ruyun Liang, Xiaoqin Feng, Yudan Zheng, Huanhuan Liu, Michael John Holdsworth, Jian-Quan Liu
Allelic shift in cis-elements of the transcription factor RAP2.12 underlies adaptation associated with humidity in Arabidopsis thaliana . Science advances 8 (18) (2022)
Wenjie Yang, Landi Feng, Pengfei Jiao, Ling Xiang, Luobai Yang, Marina V Olonova, Victor V Chepinoga, Ihsan A Al-Shehbaz, Jian-Quan Liu, Quan-Jun Hu
Out of the Qinghai-Tibet plateau: Genomic biogeography of the alpine monospecific genus Megadenia (Biscutelleae, Brassicaceae). Molecular ecology (2022)
Ningning Chen, Shaofei Tong, Jian Yang, Jiajia Qin, Weiwei Wang, Kai Chen, Wensen Shi, Jiacong Li, Jian-Quan Liu, Yuanzhong Jiang
PtoWRKY40 interacts with PtoPHR1-LIKE3 while regulating the phosphate starvation response in poplar. Plant physiology 190 (4) (2022)
Sheng-Dan Wu, Yi Wang, Zefu Wang, Nawal Shrestha, Jian-Quan Liu
Species divergence with gene flow and hybrid speciation on the Qinghai-Tibet Plateau. The New phytologist 234 (2) (2022)
Tiantian Zou, Weimin Kuang, Tingting Yin, Laurent Alain François Frantz, Chang Zhang, Jian-Quan Liu, Hong Wu, Li Yu
Uncovering the enigmatic evolution of bears in greater depth: The hybrid origin of the Asiatic black bear. Proceedings of the National Academy of Sciences of the United States of America 119 (31) (2022)
Hongyin Hu, Yongzhi Yang, Ao Li, Zeyu Zheng, Jin Zhang, Jian-Quan Liu
Genomic divergence of Stellera chamaejasme through local selection across the Qinghai-Tibet plateau and northern China. Molecular ecology 31 (18) (2022)
Wenjing Tao, Kang-Shan Mao, Jiang He, Nicholas G Smith, Yuxin Qiao, Jing Guo, Hongjun Yang, Wenzhi Wang, Jian-Quan Liu, Lei Chen
Daytime warming triggers tree growth decline in the Northern Hemisphere. Global change biology 28 (16) (2022)
Yupeng Sang, Zhiqin Long, Xuming Dan, Jiajun Feng, Tingting Shi, Changfu Jia, Xinxin Zhang, Qiang Lai, Guanglei Yang, Hongying Zhang, Xiaoting Xu, Huanhuan Liu, Yuanzhong Jiang, Pär K Ingvarsson, Jian-Quan Liu, Kang-Shan Mao, Jing Wang
Genomic insights into local adaptation and future climate-induced vulnerability of a keystone forest tree in East Asia. Nature communications 13 (1) (2022)
Shaofei Tong, Ningning Chen, Deyan Wang, Fandi Ai, Bao Liu, Liwen Ren, Yang Chen, Junlin Zhang, Shangling Lou, Huanhuan Liu, Jian-Quan Liu, Tao Ma, Yuanzhong Jiang
The U-box E3 ubiquitin ligase PalPUB79 positively regulates ABA-dependent drought tolerance via ubiquitination of PalWRKY77 in Populus. Plant biotechnology journal 19 (12) (2021)
Huanhuan Liu, Bao Liu, Shangling Lou, Hao Bi, Hu Tang, Shaofei Tong, Yan Song, Ningning Chen, Han Zhang, Yuanzhong Jiang, Jian-Quan Liu
CHYR1 ubiquitinates the phosphorylated WRKY70 for degradation to balance immunity in Arabidopsis thaliana. The New phytologist 230 (3) (2021)
Jianquan Liu, Zeyu Zheng, Juncheng Liu, Yongzhi Yang, Guang-Peng Ren, Dafu Ru, Shangzhe Zhang, Xin Du, Tao Ma, Richard Milne, Jian-Quan Liu
Evolutionary origin of a tetraploid Allium species on the Qinghai-Tibet Plateau. Molecular ecology 30 (22) (2021)
Minghui Kang, Rao Fu, Pingyu Zhang, Shangling Lou, Xuchen Yang, Yang Chen, Tao Ma, Yang Zhang, Zhenxiang Xi, Jian-Quan Liu
A chromosome-level Camptotheca acuminata genome assembly provides insights into the evolutionary origin of camptothecin biosynthesis. Nature communications 12 (1) (2021)
Guang-Peng Ren, Yanyou Jiang, Ao Li, Mou Yin, Minjie Li, Wenjie Mu, Ying Wu, Jian-Quan Liu
The genome sequence provides insights into salt tolerance of Achnatherum splendens (Gramineae), a constructive species of alkaline grassland. Plant biotechnology journal (2021)
Mingcheng Wang, Shaofei Tong, Tao Ma, Zhenxiang Xi, Jian-Quan Liu
Chromosome-level genome assembly of Sichuan pepper provides insights into apomixis, drought tolerance, and alkaloid biosynthesis. Molecular ecology resources 21 (7) (2021)
Jianquan Liu, Yongzhi Yang, Renping Xu, Wenjie Mu, Ying Li, Xingxing Mao, Zeyu Zheng, Hao Bi, Guoqian Hao, Xiaojie Li, Xiaoting Xu, Zhenxiang Xi, Nawal Shrestha, Jian-Quan Liu
A chromosome-level genome assembly for the tertiary relict plant Tetracentron sinense oliv. (trochodendraceae). Molecular ecology resources 21 (4) (2021)
Jinmei Wang, Zhenxiang Xi, Xujian He, Shanshan Chen, Sergio Rossi, Nicholas G Smith, Jian-Quan Liu, Lei Chen
Contrasting temporal variations in responses of leaf unfolding to daytime and nighttime warming. Global change biology 27 (20) (2021)
Mou Yin, Shangzhe Zhang, Xin Du, Rubén G Mateo, Wei Guo, Ao Li, Zhenyue Wang, Shuang Wu, Jinyuan Chen, Jian-Quan Liu, Guang-Peng Ren
Genomic analysis of Medicago ruthenica provides insights into its tolerance to abiotic stress and demographic history. Molecular ecology resources 21 (5) (2021)
Jianquan Liu, Terezie M Mandakova, Karolína Trachtová, Barış Özüdoğru, Jian-Quan Liu, Martin A Lysak
Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe. Molecular biology and evolution 38 (5) (2021)
Bao Liu, Yuanzhong Jiang, Hu Tang, Shaofei Tong, Shangling Lou, Chen Shao, Junlin Zhang, Yan Song, Ningning Chen, Hao Bi, Han Zhang, Junhua Li, Jian-Quan Liu, Huanhuan Liu
The ubiquitin E3 ligase SR1 modulates the submergence response by degrading phosphorylated WRKY33 in Arabidopsis. The Plant cell 33 (5) (2021)
Yongzhi Yang, Peng-Chuan Sun, Leke Lv, Donglei Wang, Dafu Ru, Ying Li, Tao Ma, Lei Zhang, Xingxing Shen, Fanbo Meng, Beibei Jiao, Lanxing Shan, Man Liu, Qing-Feng Wang, Zhiji Qin, Zhenxiang Xi, Xi-Yin Wang, Charles C Davis, Jian-Quan Liu
Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution. Nature plants 6 (3) (2020)
Ao Li, Ai Liu, Xin Du, Jin-Yuan Chen, Mou Yin, Hong-Yin Hu, Nawal Shrestha, Sheng-Dan Wu, Hai-Qing Wang, Quan-Wen Dou, Zhi-Peng Liu, Jian-Quan Liu, Yong-Zhi Yang, Guang-Peng Ren
A chromosome-scale genome assembly of a diploid alfalfa, the progenitor of autotetraploid alfalfa. Horticulture research 7 (1) (2020)
Hu Tang, Hao Bi, Bao Liu, Shangling Lou, Yan Song, Shaofei Tong, Ningning Chen, Yuanzhong Jiang, Jian-Quan Liu, Huanhuan Liu
WRKY33 interacts with WRKY12 protein to up-regulate RAP2.2 during submergence induced hypoxia response in Arabidopsis thaliana. The New phytologist 229 (1) (2020)
Zhiyang Zhang, Yang Chen, Junlin Zhang, Xinzhi Ma, Yiling Li, Mengmeng Li, Deyan Wang, Minghui Kang, Haolin Wu, Yongzhi Yang, Matthew S Olson, Stephen P DiFazio, Dongshi Wan, Jian-Quan Liu, Tao Ma
Improved genome assembly provides new insights into genome evolution in a desert poplar (Populus euphratica). Molecular ecology resources 20 (3) (2020)
Li Huang, Yazhen Ma, Jiebei Jiang, Ting Li, Wenjie Yang, Lei Zhang, Lei Wu, Landi Feng, Zhenxiang Xi, Xiaoting Xu, Jian-Quan Liu, Quan-Jun Hu
A chromosome-scale reference genome of Lobularia maritima, an ornamental plant with high stress tolerance. Horticulture research 7 (1) (2020)
Yang Chen, Tao Ma, Lushui Zhang, Minghui Kang, Zhiyang Zhang, Zeyu Zheng, Pengchuan Sun, Nawal Shrestha, Jian-Quan Liu, Yongzhi Yang
Genomic analyses of a "living fossil": The endangered dove-tree. Molecular ecology resources 20 (3) (2020)
K Zhang, Johannes A Lenstra, S Zhang, W Liu, Jian-Quan Liu
Evolution and domestication of the Bovini species. Animal genetics 51 (5) (2020)
Minghui Kang, Haolin Wu, Qiao Yang, Li Huang, Quanjun Hu, Tao Ma, Zaiyun Li, Jian-Quan Liu
A chromosome-scale genome assembly of Isatis indigotica, an important medicinal plant used in traditional Chinese medicine: An Isatis genome. Horticulture research 7 (2020)
Mingcheng Wang, Lei Zhang, Zhiyang Zhang, Mengmeng Li, Deyan Wang, Xu Zhang, Zhenxiang Xi, Ken Keefover-Ring, Lawrence B Smart, Stephen P DiFazio, Matthew S Olson, Tongming Yin, Jian-Quan Liu, Tao Ma
Phylogenomics of the genus Populus reveals extensive interspecific gene flow and balancing selection. The New phytologist 225 (3) (2019)
Dafu Ru, Yongshuai Sun, Donglei Wang, Yang Chen, Tianjing Wang, Quanjun Hu, Richard J Abbott, Jian-Quan Liu
Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process. Molecular ecology 27 (23) (2018)
Xiao-Juan Wang, Quan-Jun Hu, Jianquan Liu, Kun Wang, Da-Fu Ru, Dmitry A German, Elizabeth A Weretilnyk, Richard J Abbott, Martin Lascoux, Jian-Quan Liu
Demographic expansion and genetic load of the halophyte model plant Eutrema salsugineum. Molecular ecology 27 (14) (2018)
Shuo Feng, Dafu Ru, Yongshuai Sun, Kang-Shan Mao, Richard Milne, Jian-Quan Liu
Trans-lineage polymorphism and nonbifurcating diversification of the genus Picea. The New phytologist 222 (1) (2018)