Yves Van de Peer

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 83

Top Topics

Embryonic Stem Cells

Gene Expression

Arabidopsis Thaliana

Top Venues

The New phytologist

American journal of botany

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Fabricio Almeida-Silva, Lucas Prost-Boxoen, Yves Van de Peer
hybridexpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors. The New phytologist 243 (2) (2024)
Fabricio Almeida-Silva, Lucas Prost-Boxoen, Yves Van de Peer
hybridexpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors. The New phytologist 243 (2) (2024)
Liangyu Guo, Shuo Wang, Xi Jiao, Xiaoxue Ye, Deyin Deng, Hua Liu, Yan Li, Yves Van de Peer, Wenwu Wu
Convergent and/or parallel evolution of RNA-binding proteins in angiosperms after polyploidization. The New phytologist 242 (3) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Tao Shi, Zhiyan Gao, Jin-Ming Chen, Yves Van de Peer
Dosage sensitivity shapes balanced expression and gene longevity of homoeologs after whole-genome duplications in angiosperms. The Plant cell (2024)
Tian Wu, Quinten Bafort, Frederik Mortier, Fabricio Almeida-Silva, Annelore Natran, Yves Van de Peer
The immediate metabolomic effects of whole-genome duplication in the greater duckweed, Spirodela polyrhiza. American journal of botany 111 (8) (2024)
Silvija Milosavljevic, Felipe Kauai, Frederik Mortier, Yves Van de Peer, Dries Bonte
A metabolic perspective on polyploid invasion and the emergence of life histories: Insights from a mechanistic model. American journal of botany 111 (8) (2024)
Fabricio Almeida-Silva, Lucas Prost-Boxoen, Yves Van de Peer
hybridexpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors. The New phytologist 243 (2) (2024)
Tao Shi, Zhiyan Gao, Jin-Ming Chen, Yves Van de Peer
Dosage sensitivity shapes balanced expression and gene longevity of homoeologs after whole-genome duplications in angiosperms. The Plant cell (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Tian Wu, Quinten Bafort, Frederik Mortier, Fabricio Almeida-Silva, Annelore Natran, Yves Van de Peer
The immediate metabolomic effects of whole-genome duplication in the greater duckweed, Spirodela polyrhiza. American journal of botany 111 (8) (2024)
Felipe Kauai, Quinten Bafort, Frederik Mortier, Marc Van Montagu, Dries Bonte, Yves Van de Peer
Interspecific transfer of genetic information through polyploid bridges. Proceedings of the National Academy of Sciences of the United States of America 121 (21) (2024)
Felipe Kauai, Quinten Bafort, Frederik Mortier, Marc Van Montagu, Dries Bonte, Yves Van de Peer
Interspecific transfer of genetic information through polyploid bridges. Proceedings of the National Academy of Sciences of the United States of America 121 (21) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Tian Wu, Quinten Bafort, Frederik Mortier, Fabricio Almeida-Silva, Annelore Natran, Yves Van de Peer
The immediate metabolomic effects of whole-genome duplication in the greater duckweed, Spirodela polyrhiza. American journal of botany 111 (8) (2024)
Tian Wu, Quinten Bafort, Frederik Mortier, Fabricio Almeida-Silva, Annelore Natran, Yves Van de Peer
The immediate metabolomic effects of whole-genome duplication in the greater duckweed, Spirodela polyrhiza. American journal of botany 111 (8) (2024)
Fabricio Almeida-Silva, Lucas Prost-Boxoen, Yves Van de Peer
hybridexpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors. The New phytologist 243 (2) (2024)
Tian Wu, Quinten Bafort, Frederik Mortier, Fabricio Almeida-Silva, Annelore Natran, Yves Van de Peer
The immediate metabolomic effects of whole-genome duplication in the greater duckweed, Spirodela polyrhiza. American journal of botany (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Tian-Le Shi, Kai-Hua Jia, Yu-Tao Bao, Shuai Nie, Xue-Chan Tian, Xue-Mei Yan, Zhao-Yang Chen, Zhi-Chao Li, Shi-Wei Zhao, Hai-Yao Ma, Ye Zhao, Xiang Li, Ren-Gang Zhang, Jing Guo, Wei Zhao, El-Kassaby Yousry, Niels A Müller, Yves Van de Peer, Xiao-Ru Wang, Nathaniel Robert Street, Ilga M Porth, Xinmin An, Jian-Feng Mao
High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar. Plant physiology 195 (1) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Fabricio Almeida-Silva, Lucas Prost-Boxoen, Yves Van de Peer
hybridexpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors. The New phytologist (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Tian-Le Shi, Kai-Hua Jia, Yu-Tao Bao, Shuai Nie, Xue-Chan Tian, Xue-Mei Yan, Zhao-Yang Chen, Zhi-Chao Li, Shi-Wei Zhao, Hai-Yao Ma, Ye Zhao, Xiang Li, Ren-Gang Zhang, Jing Guo, Wei Zhao, El-Kassaby Yousry, Niels A Müller, Yves Van de Peer, Xiao-Ru Wang, Nathaniel Robert Street, Ilga M Porth, Xinmin An, Jian-Feng Mao
High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar. Plant physiology (2024)
Tian-Le Shi, Kai-Hua Jia, Yu-Tao Bao, Shuai Nie, Xue-Chan Tian, Xue-Mei Yan, Zhao-Yang Chen, Zhi-Chao Li, Shi-Wei Zhao, Hai-Yao Ma, Ye Zhao, Xiang Li, Ren-Gang Zhang, Jing Guo, Wei Zhao, El-Kassaby Yousry, Niels A Müller, Yves Van de Peer, Xiao-Ru Wang, Nathaniel Robert Street, Ilga M Porth, Xinmin An, Jian-Feng Mao
High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar. Plant physiology 195 (1) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Silvija Milosavljevic, Felipe Kauai, Frederik Mortier, Yves Van de Peer, Dries Bonte
A metabolic perspective on polyploid invasion and the emergence of life histories: Insights from a mechanistic model. American journal of botany 111 (8) (2024)
Silvija Milosavljevic, Felipe Kauai, Frederik Mortier, Yves Van de Peer, Dries Bonte
A metabolic perspective on polyploid invasion and the emergence of life histories: Insights from a mechanistic model. American journal of botany (2024)
Liangyu Guo, Shuo Wang, Xi Jiao, Xiaoxue Ye, Deyin Deng, Hua Liu, Yan Li, Yves Van de Peer, Wenwu Wu
Convergent and/or parallel evolution of RNA-binding proteins in angiosperms after polyploidization. The New phytologist 242 (3) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Felipe Kauai, Quinten Bafort, Frederik Mortier, Marc Van Montagu, Dries Bonte, Yves Van de Peer
Interspecific transfer of genetic information through polyploid bridges. Proceedings of the National Academy of Sciences of the United States of America 121 (21) (2024)
Liangyu Guo, Shuo Wang, Xi Jiao, Xiaoxue Ye, Deyin Deng, Hua Liu, Yan Li, Yves Van de Peer, Wenwu Wu
Convergent and/or parallel evolution of RNA-binding proteins in angiosperms after polyploidization. The New phytologist (2024)
Fabricio Almeida-Silva, Lucas Prost-Boxoen, Yves Van de Peer
hybridexpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors. The New phytologist 243 (2) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Silvija Milosavljevic, Felipe Kauai, Frederik Mortier, Yves Van de Peer, Dries Bonte
A metabolic perspective on polyploid invasion and the emergence of life histories: Insights from a mechanistic model. American journal of botany 111 (8) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Xiuxiu Li, Sheng Yu, Zhihao Cheng, Xiaojun Chang, Yingzi Yun, Mengwei Jiang, Xuequn Chen, Xiaohui Wen, Hua Li, Wenjun Zhu, Shiyao Xu, Yanbing Xu, Xianjun Wang, Chen Zhang, Qiong Wu, Jin Hu, Zhenguo Lin, Jean-Marc Aury, Yves Van de Peer, Zong-Hua Wang, Xiao-Fan Zhou, Jihua Wang, Peitao Lü, Liangsheng Zhang
Origin and evolution of the triploid cultivated banana genome. Nature genetics (2023)
Fabricio Almeida-Silva, Yves Van de Peer
Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms. Molecular biology and evolution 40 (7) (2023)
Mehrshad Ebadi, Quinten Bafort, Eshchar Mizrachi, Pieter Audenaert, Pieter Simoens, Marc Van Montagu, Dries Bonte, Yves Van de Peer
The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil. Proceedings of the National Academy of Sciences of the United States of America 120 (41) (2023)
Quinten Bafort, Tian Wu, Annelore Natran, Olivier De Clerck, Yves Van de Peer
The immediate effects of polyploidization of Spirodela polyrhiza change in a strain-specific way along environmental gradients. Evolution letters 7 (1) (2023)
Yu Cao, Fabricio Almeida-Silva, Wei-Ping Zhang, Ya-Mei Ding, Dan Bai, Wei-Ning Bai, Bo-Wen Zhang, Yves Van de Peer, Da-Yong Zhang
Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae). Molecular biology and evolution (2023)
Anna Zimmermann, Julian E Prieto-Vivas, Charlotte Cautereels, Anton Gorkovskiy, Jan Steensels, Yves Van de Peer, Kevin J Verstrepen
A Cas3-base editing tool for targetable in vivo mutagenesis. Nature communications 14 (1) (2023)
Lingfei Li, Xiaoli Chen, Dongming Fang, Shanshan Dong, Xing Guo, Na Li, Lucia Campos-Dominguez, Wenguang Wang, Yang Liu, Xiaoan Lang, Yang Peng, Daike Tian, Daniel C Thomas, Weixue Mu, Min Liu, Chenyu Wu, Ting Yang, Suzhou Zhang, Leilei Yang, Jianfen Yang, Zhong-Jian Liu, Liangsheng Zhang, Xing-Tan Zhang, Fei Chen, Yuan-Nian Jiao, Yalong Guo, Mark Hughes, Wei Wang, Xiaofei Liu, Chunmei Zhong, Ai-Rong Li, Sunil Kumar Sahu, Huanming Yang, Ernest Wu, Joel Sharbrough, Michael Lisby, Xin Liu, Xun Xu, Douglas Edward Soltis, Yves Van de Peer, Catherine A Kidner, Shou-Zhou Zhang, Huan Liu
Genomes shed light on the evolution of Begonia, a mega-diverse genus. The New phytologist 234 (1) (2022)
Yang Liu, Sibo Wang, Linzhou Li, Ting Yang, Shanshan Dong, Tong Wei, Sheng-Dan Wu, Yongbo Liu, Yiqing Gong, Xiuyan Feng, Jianchao Ma, Guanxiao Chang, Jinling Huang, Yong Yang, Hongli Wang, Min Liu, Yan Xu, Hongping Liang, Jin Yu, Yuqing Cai, Zhaowu Zhang, Yannan Fan, Weixue Mu, Sunil Kumar Sahu, Shuchun Liu, Xiaoan Lang, Leilei Yang, Na Li, Sadaf Habib, Yongqiong Yang, Anders Jan Lindström, Pei Liang, Bernard Goffinet, Sumaira Zaman, Jill L Wegrzyn, Dexiang Li, Jian Liu, Jie Cui, Eva Christina Sonnenschein, Xiao-Bo Wang, Jue Ruan, Jia-Yu Xue, Zhu-Qing Shao, Chi Song, Guangyi Fan, Zhen Li, Liangsheng Zhang, Jian-Quan Liu, Zhong-Jian Liu, Yuan-Nian Jiao, Xiao-Quan Wang, Hong Wu, Ertao Wang, Michael Lisby, Huanming Yang, Jian Wang, Xin Liu, Xue Liu, Nan Li, Pamela S Soltis, Yves Van de Peer, Douglas Edward Soltis, Xun Gong, Huan Liu, Shou-Zhou Zhang
The Cycas genome and the early evolution of seed plants. Nature plants 8 (4) (2022)
Jiyang Chang, Juan Pablo Marczuk-Rojas, Carrie Waterman, Armando Garcia-Llanos, Shiyu Chen, Xiao Ma, Amanda M Hulse-Kemp, Allen Van Deynze, Yves Van de Peer, Lorenzo Carretero-Paulet
Chromosome-scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication. The plant genome 15 (3) (2022)
Ming-He Li, Ke-Wei Liu, Zhen Li, Hsiang-Chia Lu, Qin-Liang Ye, Diyang Zhang, Jie-Yu Wang, Yu-Feng Li, Zhi-Ming Zhong, Xuedie Liu, Xia Yu, Ding-Kun Liu, Xiong-De Tu, Bin Liu, Yang Hao, Xing-Yu Liao, Yu-Ting Jiang, Wei-Hong Sun, Jinliao Chen, Yan-Qiong Chen, Ye Ai, Jun-Wen Zhai, Sha-Sha Wu, Zhuang Zhou, Yu-Yun Hsiao, Wan-Lin Wu, You-Yi Chen, Yu-Fu Lin, Jui-Ling Hsu, Chia-Ying Li, Zhi-Wen Wang, Xiang Zhao, Wen-Ying Zhong, Xiao-Kai Ma, Liang Ma, Jie Huang, Gui-Zhen Chen, Ming-Zhong Huang, Laiqiang Huang, Dong-Hui Peng, Yi-Bo Luo, Shuang-Quan Zou, Shi-Pin Chen, Si-Ren Lan, Wen-Chieh Tsai, Yves Van de Peer, Zhong-Jian Liu
Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy. Nature plants 8 (4) (2022)
Theresa Catania, Yi Li, Thilo Winzer, David Harvey, Fergus Meade, Anna Caridi, Andrew Leech, Tony R Larson, Zemin Ning, Jiyang Chang, Yves Van de Peer, Ian A Graham
A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago. Nature communications 13 (1) (2022)
Hengchi Chen, Yuhan Fang, Arthur Zwaenepoe, Sanwen Huang, Yves Van de Peer, Zhen Li
Revisiting ancient polyploidy in leptosporangiate ferns. The New phytologist (2022)
Renhai Peng, Yanchao Xu, Shilin Tian, Turgay Unver, Zhen Liu, Zhongli Zhou, Xiaoyan Cai, Kunbo Wang, Yangyang Wei, Yuling Liu, Heng Wang, Guanjing Hu, Zhongren Zhang, Corrinne E Grover, Yuqing Hou, Yuhong Wang, Pengtao Li, Tao Wang, Quanwei Lu, Yuanyuan Wang, Justin L Conover, Hassan Ghazal, Qinglian Wang, Baohong Zhang, Marc Van Montagu, Yves Van de Peer, Jonathan F Wendel, Fang Liu
Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons. Proceedings of the National Academy of Sciences of the United States of America 119 (39) (2022)
Theresa Catania, Yi Li, Thilo Winzer, David Harvey, Fergus Meade, Anna Caridi, Andrew Leech, Tony R Larson, Zemin Ning, Jiyang Chang, Yves Van de Peer, Ian A Graham
Author Correction: A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago. Nature communications 13 (1) (2022)
Zhen-Hui Wang, Xin-Feng Wang, Tianyuan Lu, Ming-Rui Li, Peng Jiang, Jing Zhao, Si-Tong Liu, Xue-Qi Fu, Jonathan F Wendel, Yves Van de Peer, Bao Liu, Lin-Feng Li
Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax. Nature communications 13 (1) (2022)
Chao Sun, Yun-Hui Xie, Zhen Li, Yan-Jing Liu, Xiao-Mei Sun, Jing-Jing Li, Wei-Peng Quan, Qing-Yin Zeng, Yves Van de Peer, Shou-Gong Zhang
The Larix kaempferi genome reveals new insights into wood properties. Journal of integrative plant biology 64 (7) (2022)
You-Long Cao, Yan-Long Li, Yun-Fang Fan, Zhen Li, Kouki Yoshida, Jie-Yu Wang, Xiao-Kai Ma, Ning Wang, Nobutaka Mitsuda, Toshihisa Kotake, Takeshi Ishimizu, Kun-Chan Tsai, Shan-Ce Niu, Di-Yang Zhang, Wei-Hong Sun, Qing Luo, Jian-Hua Zhao, Yue Yin, Bo Zhang, Jun-Yi Wang, Ken Qin, Wei An, Jun He, Guo-Li Dai, Ya-Jun Wang, Zhi-Gang Shi, En-Ning Jiao, Peng-Ju Wu, Xuedie Liu, Bin Liu, Xing-Yu Liao, Yu-Ting Jiang, Xia Yu, Yang Hao, Xin-Yu Xu, Shuang-Quan Zou, Ming-He Li, Yu-Yun Hsiao, Yu-Fu Lin, Chieh-Kai Liang, You-Yi Chen, Wan-Lin Wu, Hsiang-Chia Lu, Si-Ren Lan, Zhi-Wen Wang, Xiang Zhao, Wen-Ying Zhong, Chuan-Ming Yeh, Wen-Chieh Tsai, Yves Van de Peer, Zhong-Jian Liu
Wolfberry genomes and the evolution of Lycium (Solanaceae). Communications biology 4 (1) (2021)
Micael F M Gonçalves, Sandra Hilário, Marta Tacão, Yves Van de Peer, Artur Alves, Ana Cristina Falcão Esteves
Genome and Metabolome MS-Based Mining of a Marine Strain of Aspergillus affinis . Journal of fungi (Basel, Switzerland) 7 (12) (2021)
Tao Wan, Zhiming Liu, Ilia J Leitch, Haiping Xin, Gillian Maggs-Kölling, Yan-Bing Gong, Zhen Li, Eugene Marais, Yiying Liao, Can Dai, Fan Liu, Qijia Wu, Chi Song, Yadong Zhou, Weichang Huang, Kai Jiang, Qi Wang, Yong Yang, Zhixiang Zhong, Ming Yang, Xue Yan, Guangwan Hu, Chen Hou, Yingjuan Su, Shixiu Feng, Ji Yang, Jijun Yan, Jinfang Chu, Fan Chen, Jinhua Ran, Xiao-Quan Wang, Yves Van de Peer, Andrew R Leitch, Qing-Feng Wang
The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts. Nature communications 12 (1) (2021)
Tao Zhao, Arthur Zwaenepoel, Jia-Yu Xue, Shu-Min Kao, Zhen Li, Michael Eric Schranz, Yves Van de Peer
Whole-genome microsynteny-based phylogeny of angiosperms. Nature communications 12 (1) (2021)
Stephanie De Vos, Stéphane Rombauts, Louis Coussement, Wannes Dermauw, Marnik Vuylsteke, Patrick Sorgeloos, James S Clegg, Ziro Nambu, Filip Van Nieuwerburgh, Parisa Norouzitallab, Thomas Van Leeuwen, Tim De Meyer, Gilbert Van Stappen, Yves Van de Peer, Peter Bossier
The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments. BMC genomics 22 (1) (2021)
Yong-Peng Ma, Hafiz Muhammad Wariss, Rong-Li Liao, Ren-Gang Zhang, Quan-Zheng Yun, Richard G Olmstead, John H Chau, Richard I Milne, Yves Van de Peer, Wei-Bang Sun
Genome-wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation. The New phytologist 232 (3) (2021)
Linzhou Li, Sibo Wang, Hongli Wang, Sunil Kumar Sahu, Birger Marin, Haoyuan Li, Yan Xu, Hongping Liang, Zhen Li, Shifeng Cheng, Tanja Reder, Zehra Çebi, Sebastian Wittek, Morten Petersen, Barbara Melkonian, Hongli Du, Huanming Yang, Jian Wang, Gane Ka-Shu Wong, Xue Liu, Xin Liu, Yves Van de Peer, Michael Melkonian, Huan Liu
The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature ecology & evolution 4 (9) (2020)
Robert Greenhalgh, Wannes Dermauw, Joris J Glas, Stéphane Rombauts, Nicky Wybouw, Jainy Thomas, Juan M Alba, Ellen J Pritham, Saioa Legarrea, René Feyereisen, Yves Van de Peer, Thomas Van Leeuwen, Richard M Clark, Merijn R Kant
Genome streamlining in a minute herbivore that manipulates its host plant. eLife 9 (2020)
Jian Zhang, Xin-Xing Fu, Rui-Qi Li, Xiang Zhao, Yang Liu, Ming-He Li, Arthur Zwaenepoel, Xumin Zhang, Bernard Goffinet, Yan-Long Guan, Jia-Yu Xue, Yi-Ying Liao, Qing-Feng Wang, Qing-Hua Wang, Jie-Yu Wang, Guo-Qiang Zhang, Zhi-Wen Wang, Yu Jia, Mei-Zhi Wang, Shan-Shan Dong, Jian-Fen Yang, Yuan-Nian Jiao, Ya-Long Guo, Hong-Zhi Kong, An-Ming Lu, Huan-Ming Yang, Shou-Zhou Zhang, Yves Van de Peer, Zhong-Jian Liu, Zhi-Duan Chen
The hornwort genome and early land plant evolution. Nature plants 6 (2) (2020)
Lorenzo Carretero-Paulet, Yves Van de Peer
The evolutionary conundrum of whole-genome duplication. American journal of botany 107 (8) (2020)
Xiang-Dong Pu, Zhen Li, Ya Tian, Ranran Gao, Lijun Hao, Yating Hu, Chunnian He, Wei Sun, Meimei Xu, Reuben J Peters, Yves Van de Peer, Zhichao Xu, Jingyuan Song
The honeysuckle genome provides insight into the molecular mechanism of carotenoid metabolism underlying dynamic flower coloration. The New phytologist 227 (3) (2020)
Fu-Sheng Yang, Shuai Nie, Hui Liu, Tian-Le Shi, Xue-Chan Tian, Shan-Shan Zhou, Yu-Tao Bao, Kai-Hua Jia, Jing-Fang Guo, Wei Zhao, Na An, Ren-Gang Zhang, Quan-Zheng Yun, Xin-Zhu Wang, Chanaka Mannapperuma, Ilga Porth, El-Kassaby Yousry, Nathaniel Robert Street, Xiao-Ru Wang, Yves Van de Peer, Jian-Feng Mao
Chromosome-level genome assembly of a parent species of widely cultivated azaleas. Nature communications 11 (1) (2020)
Sheree Yau, Marc Krasovec, L Felipe Benites, Stephane Rombauts, Mathilde Poyet, Emmelien Vancaester, Jean-Marc Aury, Evelyne Derelle, Yves Desdevises, Marie-Line Escande, Nigel H Grimsley, Julie Guy, Hervé Moreau, Sophie Sanchez-Brosseau, Yves Van de Peer, Klaas Vandepoele, Sebastien Gourbiere, Gwenaël Piganeau
Virus-host coexistence in phytoplankton through the genomic lens. Science advances 6 (14) (2020)
Polina Yu Novikova, Ian G Brennan, William W Booker, Michael Mahony, Paul Doughty, Alan R Lemmon, Emily Moriarty Lemmon, J Dale Roberts, Levi Yant, Yves Van de Peer, J Scott Keogh, Stephen C Donnellan
Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus. PLoS genetics 16 (5) (2020)
Micael F M Gonçalves, Rui B Nunes, Laurentijn Tilleman, Yves Van de Peer, Dieter Deforce, Filip Van Nieuwerburgh, Ana C Esteves, Artur Alves
Dual RNA Sequencing of Vitis vinifera during Lasiodiplodia theobromae Infection Unveils Host-Pathogen Interactions. International journal of molecular sciences 20 (23) (2019)
Denise Navia, Valdenice M Novelli, Stéphane Rombauts, Juliana Freitas-Astúa, Renata Santos de Mendonça, Maria Andreia Nunes, Marcos A Machado, Yao-Cheng Lin, Phuong Le, Zaichao Zhang, Miodrag Grbić, Nicky Wybouw, Johannes A J Breeuwer, Thomas Van Leeuwen, Yves Van de Peer
Draft Genome Assembly of the False Spider Mite Brevipalpus yothersi. Microbiology resource announcements 8 (6) (2019)
Yao Yao, Lorenzo Carretero-Paulet, Yves Van de Peer
Using digital organisms to study the evolutionary consequences of whole genome duplication and polyploidy. PloS one 14 (7) (2019)
Ticao Zhang, Qin Qiao, Polina Yu Novikova, Qia Wang, Jipei Yue, Yanlong Guan, Shengping Ming, Tianmeng Liu, Ji De, Yixuan Liu, Ihsan A Al-Shehbaz, Hang Sun, Marc Van Montagu, Jinling Huang, Yves Van de Peer, La Qiong
Genome of Crucihimalaya himalaica, a close relative of Arabidopsis, shows ecological adaptation to high altitude. Proceedings of the National Academy of Sciences of the United States of America 116 (14) (2019)
Tao Wan, Zhi-Ming Liu, Ling-Fei Li, Andrew R Leitch, Ilia J Leitch, Rolf Lohaus, Zhong-Jian Liu, Hai-Ping Xin, Yan-Bing Gong, Yang Liu, Wen-Cai Wang, Ling-Yun Chen, Yong Yang, Laura J Kelly, Ji Yang, Jin-Ling Huang, Zhen Li, Ping Liu, Li Zhang, Hong-Mei Liu, Hui Wang, Shu-Han Deng, Meng Liu, Ji Li, Lu Ma, Yan Liu, Yang Lei, Wei Xu, Ling-Qing Wu, Fan Liu, Qian Ma, Xin-Ran Yu, Zhi Jiang, Guo-Qiang Zhang, Shao-Hua Li, Rui-Qiang Li, Shou-Zhou Zhang, Qing-Feng Wang, Yves Van de Peer, Jin-Bo Zhang, Xiao-Ming Wang
A genome for gnetophytes and early evolution of seed plants. Nature plants 4 (2) (2018)
Živa Ramšak, Anna Coll, Tjaša Stare, Oren Tzfadia, Špela Baebler, Yves Van de Peer, Kristina Gruden
Network Modeling Unravels Mechanisms of Crosstalk between Ethylene and Salicylate Signaling in Potato. Plant physiology 178 (1) (2018)
Fay-Wei Li, Paul Brouwer, Lorenzo Carretero-Paulet, Shifeng Cheng, Jan de Vries, Pierre-Marc Delaux, Ariana Eily, Nils Koppers, Li-Yaung Kuo, Zheng Li, Mathew Simenc, Ian D Small, Eric Wafula, Stephany Angarita, Michael S Barker, Andrea Bräutigam, Claude dePamphilis, Sven B Gould, Prashant S Hosmani, Yao-Moan Huang, Bruno Huettel, Yoichiro Kato, Xin Liu, Steven Maere, Rose McDowell, Lukas A Mueller, Klaas G J Nierop, Stefan Andreas Rensing, Tanner A Robison, Carl J Rothfels, Erin M Sigel, Yue Song, Prakash R Timilsena, Yves Van de Peer, Hongli Wang, Per K I Wilhelmsson, Paul G Wolf, Xun Xu, Joshua P Der, Henriette Schluepmann, Gane Ka-Shu Wong, Kathleen M Pryer
Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature plants 4 (7) (2018)
Setareh Tasdighian, Michiel Van Bel, Zhen Li, Yves Van de Peer, Lorenzo Carretero-Paulet, Steven Maere
Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity. The Plant cell 29 (11) (2017)
Riet De Smet, Ehsan Sabaghian, Zhen Li, Yvan Saeys, Yves Van de Peer
Coordinated Functional Divergence of Genes after Genome Duplication in Arabidopsis thaliana. The Plant cell 29 (11) (2017)
Sarieh Ghorbani, Yao-Cheng Lin, Boris Parizot, Ana Fernandez, Maria Fransiska Njo, Yves Van de Peer, Tom Beeckman, Pierre Hilson
Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays. Journal of experimental botany 66 (17) (2015)