Joanna L Kelley (Joanna Kelley)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Venues

Molecular ecology

Genome biology and evolution

G3 (Bethesda, Md.)

Molecular ecology resources

Washington State University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Washington State University Aug 16 2018

United States

Associate Professor :: Biological Sciences

Washington State University Aug 16 2013 - Aug 15 2018

United States

Assistant Professor :: Biological Sciences

Stanford University Aug 01 2010 - Aug 15 2013

United States

Postdoctoral Researcher :: Genetics

University of Chicago

United States

Postdoctoral Researcher :: Human Genetics

Publications

Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Maryam O Junaid, Dong H Lee, Emily C Lieb, Josef T Liem, Estelle M Martin, Mauricio Moreno, Khuslen Otgonbayar, Betsy W Romans, Kim Royar, Mary Beth Adler, David B Needle, Alex E Harkess, Joanna L Kelley, Jazlyn A Mooney, Alexis M Mychajliw
Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae. G3 (Bethesda, Md.) 14 (4) (2024)
Blair W Perry, Kerry L McGowan, Lenin Arias-Rodriguez, Sascha H Duttke, Michael Tobler, Joanna L Kelley
Nascent transcription reveals regulatory changes in extremophile fishes inhabiting hydrogen sulfide-rich environments. Proceedings. Biological sciences 291 (2025) (2024)
Blair W Perry, Kerry L McGowan, Lenin Arias-Rodriguez, Sascha H Duttke, Michael Tobler, Joanna L Kelley
Nascent transcription reveals regulatory changes in extremophile fishes inhabiting hydrogen sulfide-rich environments. Proceedings. Biological sciences 291 (2025) (2024)
Rishi De-Kayne, Blair W Perry, Kerry L McGowan, Jake Landers, Lenin Arias-Rodriguez, Ryan Greenway, Carlos M Rodríguez Peña, Michael Tobler, Joanna L Kelley
Evolutionary Rate Shifts in Coding and Regulatory Regions Underpin Repeated Adaptation to Sulfidic Streams in Poeciliid Fishes. Genome biology and evolution 16 (5) (2024)
Blair W Perry, Kerry L McGowan, Lenin Arias-Rodriguez, Sascha H Duttke, Michael Tobler, Joanna L Kelley
Nascent transcription reveals regulatory changes in extremophile fishes inhabiting hydrogen sulfide-rich environments. Proceedings. Biological sciences 291 (2025) (2024)
Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Maryam O Junaid, Dong H Lee, Emily C Lieb, Josef T Liem, Estelle M Martin, Mauricio Moreno, Khuslen Otgonbayar, Betsy W Romans, Kim Royar, Mary Beth Adler, David B Needle, Alex E Harkess, Joanna L Kelley, Jazlyn A Mooney, Alexis M Mychajliw
Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae. G3 (Bethesda, Md.) 14 (4) (2024)
Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Maryam O Junaid, Dong H Lee, Emily C Lieb, Josef T Liem, Estelle M Martin, Mauricio Moreno, Khuslen Otgonbayar, Betsy W Romans, Kim Royar, Mary Beth Adler, David B Needle, Alex E Harkess, Joanna L Kelley, Jazlyn A Mooney, Alexis M Mychajliw
Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae. G3 (Bethesda, Md.) 14 (4) (2024)
Rishi De-Kayne, Blair W Perry, Kerry L McGowan, Jake Landers, Lenin Arias-Rodriguez, Ryan Greenway, Carlos M Rodríguez Peña, Michael Tobler, Joanna L Kelley
Evolutionary Rate Shifts in Coding and Regulatory Regions Underpin Repeated Adaptation to Sulfidic Streams in Poeciliid Fishes. Genome biology and evolution 16 (5) (2024)
Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Maryam O Junaid, Dong H Lee, Emily C Lieb, Josef T Liem, Estelle M Martin, Mauricio Moreno, Khuslen Otgonbayar, Betsy W Romans, Kim Royar, Mary Beth Adler, David B Needle, Alex E Harkess, Joanna L Kelley, Jazlyn A Mooney, Alexis M Mychajliw
Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae. G3 (Bethesda, Md.) (2024)
Rishi De-Kayne, Blair W Perry, Kerry L McGowan, Jake Landers, Lenin Arias-Rodriguez, Ryan Greenway, Carlos M Rodríguez Peña, Michael Tobler, Joanna L Kelley
Evolutionary Rate Shifts in Coding and Regulatory Regions Underpin Repeated Adaptation to Sulfidic Streams in Poeciliid Fishes. Genome biology and evolution 16 (5) (2024)
Blair W Perry, Kerry L McGowan, Lenin Arias-Rodriguez, Sascha H Duttke, Michael Tobler, Joanna L Kelley
Nascent transcription reveals regulatory changes in extremophile fishes inhabiting hydrogen sulfide-rich environments. Proceedings. Biological sciences 291 (2025) (2024)
John S Sproul, Scott Hotaling, Jacqueline Heckenhauer, Ashlyn Powell, Dez Marshall, Amanda M Larracuente, Joanna L Kelley, Steffen U Pauls, Paul B Frandsen
600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges. Genome research (2023)
David Juan, Gabriel Santpere Baró, Joanna L Kelley, Omar E Cornejo, Tomas Marques-Bonet
Current advances in primate genomics: novel approaches for understanding evolution and disease. Nature reviews. Genetics (2023)
Kara M Ryan, Ryan Greenway, Jake Landers, Lenin Arias-Rodriguez, Michael Tobler, Joanna L Kelley
Selection on standing genetic variation mediates convergent evolution in extremophile fish. Molecular ecology (2023)
Harvinder Pawar, Aigerim Rymbekova, Sebastian Cuadros-Espinoza, Xin Huang, Marc de Manuel, Tom van der Valk, Irene Lobon, Marina Alvarez-Estape, Marc Haber, Olga Dolgova, Sojung Han, Paula Esteller-Cucala, David Juan, Qasim Ayub, Ruben Bautista, Joanna L Kelley, Omar E Cornejo, Oscar Lao, Aida M Andrés, Katerina Guschanski, Benard Ssebide, Mike Cranfield, Chris Tyler-Smith, Yali Xue, Javier Prado-Martinez, Tomas Marques-Bonet, Martin Kuhlwilm
Ghost admixture in eastern gorillas. Nature ecology & evolution (2023)
Alexandra K Fraik, John R McMillan, Martin Liermann, Todd Bennett, Michael L McHenry, Garrett J McKinney, Abigail H Wells, Gary Winans, Joanna L Kelley, George R Pess, Krista M Nichols
Correction: Fraik et al. The Impacts of Dam Construction and Removal on the Genetics of Recovering Steelhead ( Oncorhynchus mykiss ) Populations across the Elwha River Watershed. Genes 2021, 12 , 89. Genes 13 (9) (2022)
Scott Hotaling, Thomas Desvignes, John S Sproul, Luana S F Lins, Joanna L Kelley
Pathways to polar adaptation in fishes revealed by long-read sequencing. Molecular ecology (2022)
Scott Hotaling, John S Sproul, Jacqueline Heckenhauer, Ashlyn Powell, Amanda M Larracuente, Steffen U Pauls, Joanna L Kelley, Paul B Frandsen
Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing. Genome biology and evolution 13 (8) (2022)
John L Coffin, Joanna L Kelley, Punidan D Jeyasingh, Michael Tobler
Impacts of heavy metal pollution on the ionomes and transcriptomes of Western mosquitofish (Gambusia affinis). Molecular ecology 31 (5) (2022)
Elizabeth Tseng, Jason G Underwood, Brandon D Evans Hutzenbiler, Shawn Trojahn, Brewster F Kingham, Olga Shevchenko, Erin Bernberg, Michelle Vierra, Charles T Robbins, Heiko T Jansen, Joanna L Kelley
Long-read isoform sequencing reveals tissue-specific isoform expression between active and hibernating brown bears (Ursus arctos). G3 (Bethesda, Md.) 12 (3) (2022)
Irune Ruiz-Gartzia, Esther Lizano, Tomas Marques-Bonet, Joanna L Kelley
Recovering the genomes hidden in museum wet collections. Molecular ecology resources 22 (6) (2022)
Scott Hotaling, Joanna L Kelley, Paul B Frandsen
Toward a genome sequence for every animal: Where are we now? Proceedings of the National Academy of Sciences of the United States of America 118 (52) (2022)
Ellie E Armstrong, Blair W Perry, Yongqing Huang, Kiran V Garimella, Heiko T Jansen, Charles T Robbins, Nathan R Tucker, Joanna L Kelley
A Beary Good Genome: Haplotype-Resolved, Chromosome-Level Assembly of the Brown Bear (Ursus arctos). Genome biology and evolution 14 (9) (2022)
Richard J Wang, Yadira Peña-Garcia, Madeleine G Bibby, Muthuswamy Raveendran, Ronald Alan Harris, Heiko T Jansen, Charles T Robbins, Jeffrey Rogers, Joanna L Kelley, Matthew W Hahn
Examining the Effects of Hibernation on Germline Mutation Rates in Grizzly Bears. Genome biology and evolution 14 (10) (2022)
Rena M Schweizer, Norah Saarman, Kristina M Ramstad, Brenna R Forester, Joanna L Kelley, Brian K Hand, Rachel L Malison, Amanda S Ackiss, Mrinalini Watsa, Thomas C Nelson, Albano Beja-Pereira, Robin S Waples, W Chris Funk, Gordon Luikart
Big Data in Conservation Genomics: Boosting Skills, Hedging Bets, and Staying Current in the Field. The Journal of heredity 112 (4) (2021)
Joanna L Kelley, Michael Tobler, Daniel Beck, Ingrid Sadler-Riggleman, Corey R Quackenbush, Lenin Arias Rodriguez, Michael K Skinner
Epigenetic inheritance of DNA methylation changes in fish living in hydrogen sulfide-rich springs. Proceedings of the National Academy of Sciences of the United States of America 118 (26) (2021)
Shawn Narum, Joanna L Kelley, Nick Fountain-Jones, Rebecca Hooper, Daniel Ortiz-Barrientos, Bridget O'Boyle, Benjamin Sibbett
Editorial 2021. Molecular ecology resources 21 (1) (2021)
Alexandra K Fraik, John R McMillan, Martin Liermann, Todd Bennett, Michael L McHenry, Garrett J McKinney, Abigail H Wells, Gary Winans, Joanna L Kelley, George R Pess, Krista M Nichols
The Impacts of Dam Construction and Removal on the Genetics of Recovering Steelhead (Oncorhynchus mykiss) Populations across the Elwha River Watershed. Genes 12 (1) (2021)
Annabel Whibley, Joanna L Kelley, Shawn R Narum
The changing face of genome assemblies: Guidance on achieving high-quality reference genomes. Molecular ecology resources 21 (3) (2021)
Emily Marden, Richard J Abbott, Frédéric Austerlitz, Daniel Ortiz-Barrientos, Regina S Baucom, Pim Bongaerts, Aurélie Bonin, Camille Bonneaud, Luke Browne, C Alex Buerkle, Ana L Caicedo, David W Coltman, Mitchell B Cruzan, Angus Davison, J Andrew DeWoody, Alex J Dumbrell, Brent C Emerson, Nicholas M Fountain-Jones, Rosemary G Gillespie, Tatiana Giraud, Michael Møller Hansen, Kathryn A Hodgins, Myriam Heuertz, Shotaro Hirase, Rebecca Hooper, Paul A Hohenlohe, Nolan C Kane, Joanna L Kelley, Andrew P Kinziger, Valerie J McKenzie, Corrie S Moreau, Alison Gonçalves Nazareno, Tara A Pelletier, Josephine M Pemberton, Yanhua Qu, Sébastien Renaut, Cynthia Riginos, Naiara Rodríguez-Ezpeleta, Sean M Rogers, Jacob A Russell, Sean D Schoville, Suhua Shi, Megan Smith, Victoria L Sork, Graham N Stone, Pierre Taberlet, Elin Videvall, Lisette Waits, Emily Warschefsky, Robert K Wayne, Annabel Whibley, Janna Willoughby, Jeremy B Yoder, Lucie Zinger, Benjamin Sibbett, Shawn Narum, Loren H Rieseberg
Sharing and reporting benefits from biodiversity research. Molecular ecology 30 (5) (2020)
Heiko T Jansen, Shawn Trojahn, Michael W Saxton, Corey R Quackenbush, Brandon D Evans Hutzenbiler, O Lynne Nelson, Omar E Cornejo, Charles T Robbins, Joanna L Kelley
Author Correction: Hibernation induces widespread transcriptional remodeling in metabolic tissues of the grizzly bear. Communications biology 3 (1) (2020)
Zhen Fu, Amanda R Meier, Brendan Epstein, Alan O Bergland, Carmen I Castillo Carrillo, William R Cooper, Regina K Cruzado, David R Horton, Andrew S Jensen, Joanna L Kelley, Arash Rashed, Stuart R Reitz, Silvia I Rondon, Jenita Thinakaran, Erik J Wenninger, Carrie H Wohleb, David W Crowder, William E Snyder
Host plants and Wolbachia shape the population genetics of sympatric herbivore populations. Evolutionary applications 13 (10) (2020)
Scott Hotaling, Alisha A Shah, Kerry L McGowan, Lusha M Tronstad, J Joseph Giersch, Debra S Finn, H Arthur Woods, Michael E Dillon, Joanna L Kelley
Mountain stoneflies may tolerate warming streams: Evidence from organismal physiology and gene expression. Global change biology 26 (10) (2020)
Scott Hotaling, Joanna L Kelley, Paul B Frandsen
Aquatic Insects Are Dramatically Underrepresented in Genomic Research. Insects 11 (9) (2020)
Joanna L Kelley, Thomas Desvignes, Kerry L McGowan, Marcos A Perez, Lenin Arias Rodriguez, Anthony P Brown, Zachary W Culumber, Michael Tobler
microRNA expression variation as a potential molecular mechanism contributing to adaptation to hydrogen sulphide. Journal of evolutionary biology 34 (6) (2020)
Scott Hotaling, Peter H Wimberger, Joanna L Kelley, Heather E Watts
Macroinvertebrates on glaciers: a key resource for terrestrial food webs? Ecology 101 (4) (2020)
Ryan Greenway, Nick Barts, Chathurika Henpita, Anthony P Brown, Lenin Arias Rodriguez, Carlos M Rodríguez Peña, Sabine Arndt, Gigi Y Lau, Michael P Murphy, Lei Wu, Dingbo Lin, Michael Tobler, Joanna L Kelley, Jennifer H Shaw
Convergent evolution of conserved mitochondrial pathways underlies repeated adaptation to extreme environments. Proceedings of the National Academy of Sciences of the United States of America 117 (28) (2020)
Joanna L Kelley, Yoav Gilad
Effective study design for comparative functional genomics. Nature reviews. Genetics 21 (7) (2020)
Heiko T Jansen, Shawn Trojahn, Michael W Saxton, Corey R Quackenbush, Brandon D Evans Hutzenbiler, O Lynne Nelson, Omar E Cornejo, Charles T Robbins, Joanna L Kelley
Hibernation induces widespread transcriptional remodeling in metabolic tissues of the grizzly bear. Communications biology 2 (2019)
Alexandra K Fraik, Corey Quackenbush, Mark J Margres, Sebastien Comte, David G Hamilton, Christopher P Kozakiewicz, Menna Jones, Rodrigo Hamede, Paul A Hohenlohe, Andrew Storfer, Joanna L Kelley
Transcriptomics of Tasmanian Devil (Sarcophilus Harrisii) Ear Tissue Reveals Homogeneous Gene Expression Patterns across a Heterogeneous Landscape. Genes 10 (10) (2019)
Scott Hotaling, Joanna L Kelley
The rising tide of high-quality genomic resources. Molecular ecology resources 19 (3) (2019)
David B Lowry, Sean Hoban, Joanna L Kelley, Katie E Lotterhos, Laura K Reed, Michael F Antolin, Andrew Storfer
Responsible RAD: Striving for best practices in population genomic studies of adaptation. Molecular ecology resources 17 (3) (2019)
Michael Tobler, Joanna L Kelley, Martin Plath, Rüdiger Riesch
Extreme environments and the origins of biodiversity: Adaptation and speciation in sulphide spring fishes. Molecular ecology 27 (4) (2018)
Courtney N Passow, Anthony P Brown, Lenin Arias-Rodriguez, Muh-Ching Yee, Alexandra Sockell, Manfred Schartl, Wesley C Warren, Carlos Bustamante, Joanna L Kelley, Michael Tobler
Complexities of gene expression patterns in natural populations of an extremophile fish (Poecilia mexicana, Poeciliidae). Molecular ecology 26 (16) (2017)
Anthony P Brown, Ryan Greenway, Samuel Morgan, Corey R Quackenbush, Luca Giordani, Lenin Arias-Rodriguez, Michael Tobler, Joanna L Kelley
Genome-scale data reveal that endemic Poecilia populations from small sulphidic springs display no evidence of inbreeding. Molecular ecology 26 (19) (2017)
Courtney N Passow, Chathurika Henpita, Jennifer H Shaw, Corey R Quackenbush, Wesley C Warren, Manfred Schartl, Lenin Arias-Rodriguez, Joanna L Kelley, Michael Tobler
The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish. Molecular ecology 26 (22) (2017)

Joanna L Kelley.css-eqlu8i{font-size:small;padding-left:4px;} (Joanna Kelley)

Publication Activity (10 Years)

Top Topics

Top Venues

Joanna L Kelley (Joanna Kelley)