Jochen Christoph Reif (Jochen C Reif, Jochen Reif)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 40

Top Topics

Dna Methylation

Arabidopsis Thaliana

Genome Wide Association Study

Top Venues

Scientific data

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Xiaoming He, Danning Wang, Yong Jiang, Meng Li, Manuel Delgado-Baquerizo, Chloee M McLaughlin, Caroline Marcon, Li Guo, Marcel Baer, Yudelsy Antonia Tandron Moya, Nicolaus von Wirén, Marion Deichmann, Gabriel Schaaf, Hans-Peter Piepho, Zhikai Yang, Jinliang Yang, Bunlong Yim, Kornelia Smalla, Sofie Goormachtig, Franciska T De Vries, Hubert Hüging, Mareike Baer, Ruairidh J H Sawers, Jochen Christoph Reif, Frank Hochholdinger, Xinping Chen, Peng Yu
Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nature plants 10 (4) (2024)
Pavel Svoboda, Vojtěch Holubec, Jochen Christoph Reif, Marcel O Berkner
Curation of historical phenotypic wheat data from the Czech Genebank for research and breeding. Scientific data 11 (1) (2024)
Xiaoming He, Danning Wang, Yong Jiang, Meng Li, Manuel Delgado-Baquerizo, Chloee M McLaughlin, Caroline Marcon, Li Guo, Marcel Baer, Yudelsy Antonia Tandron Moya, Nicolaus von Wirén, Marion Deichmann, Gabriel Schaaf, Hans-Peter Piepho, Zhikai Yang, Jinliang Yang, Bunlong Yim, Kornelia Smalla, Sofie Goormachtig, Franciska T De Vries, Hubert Hüging, Mareike Baer, Ruairidh J H Sawers, Jochen Christoph Reif, Frank Hochholdinger, Xinping Chen, Peng Yu
Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nature plants 10 (4) (2024)
Xiaoming He, Danning Wang, Yong Jiang, Meng Li, Manuel Delgado-Baquerizo, Chloee M McLaughlin, Caroline Marcon, Li Guo, Marcel Baer, Yudelsy Antonia Tandron Moya, Nicolaus von Wirén, Marion Deichmann, Gabriel Schaaf, Hans-Peter Piepho, Zhikai Yang, Jinliang Yang, Bunlong Yim, Kornelia Smalla, Sofie Goormachtig, Franciska T De Vries, Hubert Hüging, Mareike Baer, Ruairidh J H Sawers, Jochen Christoph Reif, Frank Hochholdinger, Xinping Chen, Peng Yu
Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nature plants (2024)
Emile Cavalet-Giorsa, Andrea González-Muñoz, Naveenkumar Athiyannan, Samuel Holden, Adil Salhi, Catherine Gardener, Jesús Quiroz-Chávez, Samira M Rustamova, Ahmed Fawzy Elkot, Mehran Patpour, Awais Rasheed, Long Mao, Evans S Lagudah, Sambasivam K Periyannan, Mingzhe Zhang, Axel Himmelbach, Jochen Christoph Reif, Manuela Knauft, Martin Mascher, Nils Stein, Noam Chayut, Sreya Ghosh, Dragan Perovic, Alexander Putra, Ana B Perera, Chia-Yi Hu, Guotai Yu, Hanin Ibrahim Ahmed, Konstanze D Laquai, Luis F Rivera, Renjie Chen, Yajun Wang, Xin Gao, Sanzhen Liu, W John Raupp, Eric L Olson, Jong-Yeol Lee, Parveen Chhuneja, Satinder Kaur, Peng Zhang, Robert F Park, Yi Ding, Deng-Cai Liu, Wanlong Li, Firuza Y Nasyrova, Jan Dvorak, Mehrdad Abbasi, Meng Li, Naveen Kumar, Wilku B Meyer, Willem H P Boshoff, Brian J Steffenson, Oadi Matny, Parva K Sharma, Vijay K Tiwari, Surbhi Grewal, Curtis J Pozniak, Harmeet Singh Chawla, Jennifer Ens, Luke T Dunning, James A Kolmer, Gerard R Lazo, Steven S Xu, Yong Q Gu, Xianyang Xu, Cristobal Uauy, Michael Abrouk, Salim Bougouffa, Gurcharn S Brar, Brande B H Wulff, Simon G Krattinger
Origin and evolution of the bread wheat D genome. Nature (2024)
Xiaoming He, Danning Wang, Yong Jiang, Meng Li, Manuel Delgado-Baquerizo, Chloee M McLaughlin, Caroline Marcon, Li Guo, Marcel Baer, Yudelsy Antonia Tandron Moya, Nicolaus von Wirén, Marion Deichmann, Gabriel Schaaf, Hans-Peter Piepho, Zhikai Yang, Jinliang Yang, Bunlong Yim, Kornelia Smalla, Sofie Goormachtig, Franciska T De Vries, Hubert Hüging, Mareike Baer, Ruairidh J H Sawers, Jochen Christoph Reif, Frank Hochholdinger, Xinping Chen, Peng Yu
Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nature plants 10 (4) (2024)
Xiaoming He, Danning Wang, Yong Jiang, Meng Li, Manuel Delgado-Baquerizo, Chloee M McLaughlin, Caroline Marcon, Li Guo, Marcel Baer, Yudelsy Antonia Tandron Moya, Nicolaus von Wirén, Marion Deichmann, Gabriel Schaaf, Hans-Peter Piepho, Zhikai Yang, Jinliang Yang, Bunlong Yim, Kornelia Smalla, Sofie Goormachtig, Franciska T De Vries, Hubert Hüging, Mareike Baer, Ruairidh J H Sawers, Jochen Christoph Reif, Frank Hochholdinger, Xinping Chen, Peng Yu
Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nature plants 10 (4) (2024)
Xiaoming He, Danning Wang, Yong Jiang, Meng Li, Manuel Delgado-Baquerizo, Chloee M McLaughlin, Caroline Marcon, Li Guo, Marcel Baer, Yudelsy Antonia Tandron Moya, Nicolaus von Wirén, Marion Deichmann, Gabriel Schaaf, Hans-Peter Piepho, Zhikai Yang, Jinliang Yang, Bunlong Yim, Kornelia Smalla, Sofie Goormachtig, Franciska T De Vries, Hubert Hüging, Mareike Baer, Ruairidh J H Sawers, Jochen Christoph Reif, Frank Hochholdinger, Xinping Chen, Peng Yu
Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nature plants 10 (4) (2024)
Emile Cavalet-Giorsa, Andrea González-Muñoz, Naveenkumar Athiyannan, Samuel Holden, Adil Salhi, Catherine Gardener, Jesús Quiroz-Chávez, Samira M Rustamova, Ahmed Fawzy Elkot, Mehran Patpour, Awais Rasheed, Long Mao, Evans S Lagudah, Sambasivam K Periyannan, Mingzhe Zhang, Axel Himmelbach, Jochen Christoph Reif, Manuela Knauft, Martin Mascher, Nils Stein, Noam Chayut, Sreya Ghosh, Dragan Perovic, Alexander Putra, Ana B Perera, Chia-Yi Hu, Guotai Yu, Hanin Ibrahim Ahmed, Konstanze D Laquai, Luis F Rivera, Renjie Chen, Yajun Wang, Xin Gao, Sanzhen Liu, W John Raupp, Eric L Olson, Jong-Yeol Lee, Parveen Chhuneja, Satinder Kaur, Peng Zhang, Robert F Park, Yi Ding, Deng-Cai Liu, Wanlong Li, Firuza Y Nasyrova, Jan Dvorak, Mehrdad Abbasi, Meng Li, Naveen Kumar, Wilku B Meyer, Willem H P Boshoff, Brian J Steffenson, Oadi Matny, Parva K Sharma, Vijay K Tiwari, Surbhi Grewal, Curtis J Pozniak, Harmeet Singh Chawla, Jennifer Ens, Luke T Dunning, James A Kolmer, Gerard R Lazo, Steven S Xu, Yong Q Gu, Xianyang Xu, Cristobal Uauy, Michael Abrouk, Salim Bougouffa, Gurcharn S Brar, Brande B H Wulff, Simon G Krattinger
Origin and evolution of the bread wheat D genome. Nature (2024)
Pavel Svoboda, Vojtěch Holubec, Jochen Christoph Reif, Marcel O Berkner
Curation of historical phenotypic wheat data from the Czech Genebank for research and breeding. Scientific data 11 (1) (2024)
Jefferson F Paril, Jochen Christoph Reif, Alexandre Fournier-Level, Mohammad Pourkheirandish
Heterosis in crop improvement. The Plant journal : for cell and molecular biology (2023)
Tobias Würschum, Xintian Zhu, Yusheng Zhao, Yong Jiang, Jochen Christoph Reif, Hans Peter Maurer
Maximization through optimization? On the relationship between hybrid performance and parental genetic distance. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 136 (9) (2023)
Marcel O Berkner, Albert Wilhelm Schulthess, Yusheng Zhao, Yong Jiang, Markus Oppermann, Jochen Christoph Reif
Choosing the right tool: Leveraging of plant genetic resources in wheat (Triticum aestivum L.) benefits from selection of a suitable genomic prediction model. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2022)
Albert Wilhelm Schulthess, Sandip M Kale, Yusheng Zhao, Abhishek Gogna, Maximilian Rembe, Norman Philipp, Fang Liu, Ulrike Beukert, Albrecht Serfling, Axel Himmelbach, Markus Oppermann, Stephan Weise, Philipp H G Boeven, Johannes Schacht, C Friedrich H Longin, Sonja Kollers, Nina Pfeiffer, Viktor Korzun, Anne Fiebig, Danuta Schüler, Matthias Lange, Uwe Scholz, Nils Stein, Martin Mascher, Jochen Christoph Reif
Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding. Scientific data 9 (1) (2022)
Abhishek Gogna, Albert W Schulthess, Marion S Röder, Martin W Ganal, Jochen Christoph Reif
Gabi wheat a panel of European elite lines as central stock for wheat genetic research. Scientific data 9 (1) (2022)
Albert W Schulthess, Sandip M Kale, Fang Liu, Yusheng Zhao, Norman Philipp, Maximilian Rembe, Yong Jiang, Ulrike Beukert, Albrecht Serfling, Axel Himmelbach, Jörg Fuchs, Markus Oppermann, Stephan Weise, Philipp H G Boeven, Johannes Schacht, C Friedrich H Longin, Sonja Kollers, Nina Pfeiffer, Viktor Korzun, Matthias Lange, Uwe Scholz, Nils Stein, Martin Mascher, Jochen Christoph Reif
Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement. Nature genetics 54 (10) (2022)
Hermann Buerstmayr, Maria Fernanda Dreccer, Dragana Miladinović, Li-Juan Qiu, Istvan Rajcan, Jochen Christoph Reif, Rajeev Kumar Varshney, Johann Vollmann
Plant breeding for increased sustainability: challenges, opportunities and progress. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 135 (11) (2022)
Albert Wilhelm Schulthess, Sandip M Kale, Yusheng Zhao, Abhishek Gogna, Maximilian Rembe, Norman Philipp, Fang Liu, Ulrike Beukert, Albrecht Serfling, Axel Himmelbach, Markus Oppermann, Stephan Weise, Philipp H G Boeven, Johannes Schacht, C Friedrich H Longin, Sonja Kollers, Nina Pfeiffer, Viktor Korzun, Anne Fiebig, Danuta Schüler, Matthias Lange, Uwe Scholz, Nils Stein, Martin Mascher, Jochen Christoph Reif
Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding. Scientific data 9 (1) (2022)
Albert Wilhelm Schulthess, Sandip M Kale, Yusheng Zhao, Abhishek Gogna, Maximilian Rembe, Norman Philipp, Fang Liu, Ulrike Beukert, Albrecht Serfling, Axel Himmelbach, Markus Oppermann, Stephan Weise, Philipp H G Boeven, Johannes Schacht, C Friedrich H Longin, Sonja Kollers, Nina Pfeiffer, Viktor Korzun, Anne Fiebig, Danuta Schüler, Matthias Lange, Uwe Scholz, Nils Stein, Martin Mascher, Jochen Christoph Reif
Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding. Scientific data 9 (1) (2022)
Albert Wilhelm Schulthess, Sandip M Kale, Yusheng Zhao, Abhishek Gogna, Maximilian Rembe, Norman Philipp, Fang Liu, Ulrike Beukert, Albrecht Serfling, Axel Himmelbach, Markus Oppermann, Stephan Weise, Philipp H G Boeven, Johannes Schacht, C Friedrich H Longin, Sonja Kollers, Nina Pfeiffer, Viktor Korzun, Anne Fiebig, Danuta Schüler, Matthias Lange, Uwe Scholz, Nils Stein, Martin Mascher, Jochen Christoph Reif
Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding. Scientific data 9 (1) (2022)
Yan-Fei Li, Ying-Hui Li, Shan-Shan Su, Jochen Christoph Reif, Zhao-Ming Qi, Xiao-Bo Wang, Xing Wang, Yu Tian, De-Lin Li, Li-Juan Qiu, Zhang-Xiong Liu, Ze-Jun Xu, Guang-Hui Fu, Ya-Liang Ji, Qing-Shan Chen, Ji-Qiang Liu, Li-Juan Qiu
SoySNP618K array: A high-resolution single nucleotide polymorphism platform as a valuable genomic resource for soybean genetics and breeding. Journal of integrative plant biology 64 (3) (2022)
Moritz Lell, Jochen Christoph Reif, Yusheng Zhao
Optimizing the setup of multienvironmental hybrid wheat yield trials for boosting the selection capability. The plant genome 14 (3) (2021)
Maria Y Gonzalez, Yusheng Zhao, Yong Jiang, Nils Stein, Antje Habekuss, Jochen Christoph Reif, Albert W Schulthess
Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 134 (7) (2021)
Yusheng Zhao, Patrick Thorwarth, Yong Jiang, Norman Philipp, Albert Wilhelm Schulthess, Mario Gils, Philipp H G Boeven, C Friedrich H Longin, Johannes Schacht, Erhard Ebmeyer, Viktor Korzun, Vilson Mirdita, Jost Dörnte, Ulrike Avenhaus, Ralf Horbach, Hilmar Cöster, Josef Holzapfel, Ludwig Ramgraber, Simon Kühnle, Pierrick Varenne, Anne Starke, Carl Friedrich Horst Longin, Sebastian Beier, Uwe Scholz, Fang Liu, Renate H Schmidt, Jochen Christoph Reif
Unlocking big data doubled the accuracy in predicting the grain yield in hybrid wheat. Science advances 7 (24) (2021)
Evangelia A Papoutsoglou, Daniel Faria, Daniel Arend, Elizabeth Arnaud, Ioannis N Athanasiadis, Inês Chaves, Frederik Coppens, Guillaume Cornut, Bruno V Costa, Hanna Ćwiek-Kupczyńska, Bert Droesbeke, Richard Finkers, Kristina Gruden, Astrid Junker, Graham John King, Paweł Krajewski, Matthias Lange, Marie-Angélique Laporte, Célia Michotey, Markus Oppermann, Richard Ostler, Hendrik Poorter, Ricardo Humberto Ramirez-Gonzalez, Živa Ramšak, Jochen Christoph Reif, Philippe Rocca-Serra, Susanna-Assunta Sansone, Uwe Scholz, François Tardieu, Cristobal Uauy, Björn Usadel, Richard G F Visser, Stephan Weise, Paul Julian Kersey, Célia Maria Miguel, Anne-Françoise Adam-Blondon, Cyril Pommier
Enabling reusability of plant phenomic datasets with MIAPPE 1.1. The New phytologist 227 (1) (2020)
Yong Jiang, Jochen Christoph Reif
Efficient Algorithms for Calculating Epistatic Genomic Relationship Matrices. Genetics 216 (3) (2020)
Maria Pogoda, Fang Liu, Dimitar Douchkov, Armin Djamei, Jochen Christoph Reif, Patrick Schweizer, Albert Wilhelm Schulthess
Identification of novel genetic factors underlying the host-pathogen interaction between barley (Hordeum vulgare L.) and powdery mildew (Blumeria graminis f. sp. hordei). PloS one 15 (7) (2020)
Philipp H G Boeven, Yusheng Zhao, Patrick Thorwarth, Fang Liu, Hans Peter Maurer, Mario Gils, Ralf Schachschneider, Johannes Schacht, Erhard Ebmeyer, Ebrahim Kazman, Vilson Mirdita, Jost Dörnte, Stefan Kontowski, Ralf Horbach, Hilmar Cöster, Josef Holzapfel, Andreas Jacobi, Ludwig Ramgraber, Carsten Reinbrecht, Norbert Starck, Pierrick Varenne, Anne Starke, Friederike Schürmann, Martin Ganal, Andreas Polley, Jens Hartung, Sebastian Beier, Uwe Scholz, C Friedrich H Longin, Jochen Christoph Reif, Yong Jiang, Tobias Würschum
Negative dominance and dominance-by-dominance epistatic effects reduce grain-yield heterosis in wide crosses in wheat. Science advances 6 (24) (2020)
Fang Liu, Yusheng Zhao, Sebastian Beier, Yong Jiang, Patrick Thorwarth, C Friedrich H Longin, Martin Ganal, Axel Himmelbach, Jochen Christoph Reif, Albert Wilhelm Schulthess
Exome association analysis sheds light onto leaf rust (Puccinia triticina) resistance genes currently used in wheat breeding (Triticum aestivum L.). Plant biotechnology journal 18 (6) (2019)
Karolina Maria Słomińska-Durdasiak, Sonja Kollers, Viktor Korzun, Daniela Nowara, Patrick Schweizer, Armin Djamei, Jochen Christoph Reif
Association mapping of wheat Fusarium head blight resistance-related regions using a candidate-gene approach and their verification in a biparental population. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 133 (1) (2019)
Norman Philipp, Stephan Weise, Markus Oppermann, Andreas Börner, Jens Keilwagen, Benjamin Kilian, Daniel Arend, Yusheng Zhao, Andreas Graner, Jochen Christoph Reif, Albert Wilhelm Schulthess
Historical phenotypic data from seven decades of seed regeneration in a wheat ex situ collection. Scientific data 6 (1) (2019)
Martin Mascher, Mona Schreiber, Uwe Scholz, Andreas Graner, Jochen Christoph Reif, Nils Stein
Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding. Nature genetics 51 (7) (2019)
Yong Jiang, Renate H Schmidt, Jochen Christoph Reif
Haplotype-Based Genome-Wide Prediction Models Exploit Local Epistatic Interactions Among Markers. G3 (Bethesda, Md.) 8 (5) (2018)
Tobias Würschum, Guozheng Liu, Philipp H G Boeven, C Friedrich H Longin, Vilson Mirdita, Ebrahim Kazman, Yusheng Zhao, Jochen Christoph Reif
Exploiting the Rht portfolio for hybrid wheat breeding. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 131 (7) (2018)
Patrick Thorwarth, Guozheng Liu, Erhard Ebmeyer, Johannes Schacht, Ralf Schachschneider, Ebrahim Kazman, Jochen Christoph Reif, Tobias Würschum, Carl Friedrich Horst Longin
Dissecting the genetics underlying the relationship between protein content and grain yield in a large hybrid wheat population. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 132 (2) (2018)
Sara Giulia Milner, Matthias Jost, Shin Taketa, Elena Rey Mazón, Axel Himmelbach, Markus Oppermann, Stephan Weise, Helmut Knüpffer, Martín Basterrechea, Patrick König, Danuta Schüler, Rajiv Sharma, Raj K Pasam, Twan Rutten, Ganggang Guo, Dongdong Xu, Jing Zhang, Gerhard Herren, Thomas Müller, Simon G Krattinger, Beat Keller, Yong Jiang, Maria Y Gonzalez, Yusheng Zhao, Antje Habekuß, Sandra Färber, Frank Ordon, Matthias Lange, Andreas Börner, Andreas Graner, Jochen Christoph Reif, Uwe Scholz, Martin Mascher, Nils Stein
Genebank genomics highlights the diversity of a global barley collection. Nature genetics 51 (2) (2018)
Maria Y Gonzalez, Stephan Weise, Yusheng Zhao, Norman Philipp, Daniel Arend, Andreas Börner, Markus Oppermann, Andreas Graner, Jochen Christoph Reif, Albert W Schulthess
Unbalanced historical phenotypic data from seed regeneration of a barley ex situ collection. Scientific data 5 (2018)
Zifeng Guo, Yusheng Zhao, Marion S Röder, Jochen Christoph Reif, Martin W Ganal, Dijun Chen, Thorsten Schnurbusch
Manipulation and prediction of spike morphology traits for the improvement of grain yield in wheat. Scientific reports 8 (1) (2018)
Rajeev Kumar Varshney, Chengcheng Shi, Mahendar Thudi, Cedric Mariac, Jason Wallace, Peng Qi, He Zhang, Yusheng Zhao, Xiyin Wang, Abhishek Rathore, Rakesh K Srivastava, Annapurna Chitikineni, Guangyi Fan, Prasad Bajaj, Somashekhar Punnuri, S K Gupta, Hao Wang, Yong Jiang, Marie Couderc, Mohan A V S K Katta, Dev R Paudel, K D Mungra, Wenbin Chen, Karen R Harris-Shultz, Vanika Garg, Neetin Desai, Dadakhalandar Doddamani, Ndjido Ardo Kane, Joann A Conner, Arindam Ghatak, Palak Chaturvedi, Sabarinath Subramaniam, Om Parkash Yadav, Cécile Berthouly-Salazar, Falalou Hamidou, Jianping Wang, Xinming Liang, Jérémy Clotault, Hari D Upadhyaya, Philippe Cubry, Bénédicte Rhoné, Mame Codou Gueye, Ramanjulu Sunkar, Christian Dupuy, Francesca Sparvoli, Shifeng Cheng, R S Mahala, Bharat Singh, Rattan S Yadav, Eric Lyons, Swapan K Datta, C Tom Hash, Katrien M Devos, Edward S Buckler, Jeffrey L Bennetzen, Andrew H Paterson, Peggy Ozias-Akins, Stefania Grando, Jun Wang, Trilochan Mohapatra, Wolfram Weckwerth, Jochen Christoph Reif, Xin Liu, Yves Vigouroux, Xun Xu
Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature biotechnology 35 (10) (2017)
Yong Jiang, Renate H Schmidt, Yusheng Zhao, Jochen Christoph Reif
A quantitative genetic framework highlights the role of epistatic effects for grain-yield heterosis in bread wheat. Nature genetics 49 (12) (2017)