John Arevalo

Publication Activity (10 Years)

Years Active: 2023-2024
Publications (10 Years): 15

Top Topics

Top Venues

bioRxiv : the preprint server for biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Alexandr A Kalinin, John Arevalo, Loan Vulliard, Erik Serrano, Hillary Tsang, Michael Bornholdt, Bartek Rajwa, Anne E Carpenter, Gregory P Way, Shantanu Singh
A versatile information retrieval framework for evaluating profile strength and similarity. bioRxiv : the preprint server for biology (2024)
Robert H W van Dijk, John Arevalo, Mehrtash Babadi, Anne E Carpenter, Shantanu Singh
Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning. bioRxiv : the preprint server for biology (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods 21 (6) (2024)
Alexandr A Kalinin, John Arevalo, Loan Vulliard, Erik Serrano, Hillary Tsang, Michael Bornholdt, Bartek Rajwa, Anne E Carpenter, Gregory P Way, Shantanu Singh
A versatile information retrieval framework for evaluating profile strength and similarity. bioRxiv : the preprint server for biology (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods (2024)
John Arevalo, Ellen Su, Jessica D Ewald, Robert van Dijk, Anne E Carpenter, Shantanu Singh
Evaluating batch correction methods for image-based cell profiling. Nature communications 15 (1) (2024)
Alexandr A Kalinin, John Arevalo, Loan Vulliard, Erik Serrano, Hillary Tsang, Michael Bornholdt, Bartek Rajwa, Anne E Carpenter, Gregory P Way, Shantanu Singh
A versatile information retrieval framework for evaluating profile strength and similarity. bioRxiv : the preprint server for biology (2024)
John Arevalo, Ellen Su, Jessica D Ewald, Robert van Dijk, Anne E Carpenter, Shantanu Singh
Evaluating batch correction methods for image-based cell profiling. Nature communications 15 (1) (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods 21 (6) (2024)
Erin Weisbart, Ankur Kumar, John Arevalo, Anne E Carpenter, Beth A Cimini, Shantanu Singh
Cell Painting Gallery: an open resource for image-based profiling. Nature methods (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods 21 (6) (2024)
John Arevalo, Ellen Su, Jessica D Ewald, Robert van Dijk, Anne E Carpenter, Shantanu Singh
Evaluating batch correction methods for image-based cell profiling. Nature communications 15 (1) (2024)
Robert H W van Dijk, John Arevalo, Mehrtash Babadi, Anne E Carpenter, Shantanu Singh
Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning. bioRxiv : the preprint server for biology (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods 21 (6) (2024)
John Arevalo, Robert van Dijk, Anne E Carpenter, Shantanu Singh
Evaluating batch correction methods for image-based cell profiling. bioRxiv : the preprint server for biology (2023)