John R Shaffer (J R Shaffer)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 44

Top Topics

Cerebrospinal Fluid

Dna Methylation

Genome Wide Association Study

Top Venues

Journal of dental research

This page only lists publications with an associated author ORCID identifier.

Publications

N Fries, Simown Howarth, John R Shaffer, Anders Esberg, Kimon Divaris, M L Marazita, I Johansson
A Polygenic Score Predicts Caries Experience in Elderly Swedish Adults. Journal of dental research 103 (5) (2024)
Jeongwi An, Christa L Lilly, John R Shaffer, Betsy Foxman, Mary L Marazita, Daniel W McNeil
Effects of depression and stress on oral self-care among perinatal women in Appalachia: A longitudinal study. Community dentistry and oral epidemiology (2024)
Jaaved Mohammed, Neha Arora, Harold S Matthews, Karissa Hansen, Maram Bader, Susan Walsh, John R Shaffer, Seth M Weinberg, Tomek Swigut, Peter Claes, Licia Selleri, Joanna Wysocka
A common cis- regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PKDCC during chondrogenesis. eLife 13 (2024)
Jaaved Mohammed, Neha Arora, Harold S Matthews, Karissa Hansen, Maram Bader, Susan Walsh, John R Shaffer, Seth M Weinberg, Tomek Swigut, Peter Claes, Licia Selleri, Joanna Wysocka
A common cis- regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PKDCC during chondrogenesis. eLife 13 (2024)
N Fries, Simown Howarth, John R Shaffer, Anders Esberg, Kimon Divaris, M L Marazita, I Johansson
A Polygenic Score Predicts Caries Experience in Elderly Swedish Adults. Journal of dental research 103 (5) (2024)
Jaaved Mohammed, Neha Arora, Harold S Matthews, Karissa Hansen, Maram Bader, Susan Walsh, John R Shaffer, Seth M Weinberg, Tomek Swigut, Peter Claes, Licia Selleri, Joanna Wysocka
A common cis- regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PKDCC during chondrogenesis. eLife 13 (2024)
N Fries, Simown Howarth, John R Shaffer, Anders Esberg, Kimon Divaris, M L Marazita, I Johansson
A Polygenic Score Predicts Caries Experience in Elderly Swedish Adults. Journal of dental research 103 (5) (2024)
Jaaved Mohammed, Neha Arora, Harold S Matthews, Karissa Hansen, Maram Bader, Susan Walsh, John R Shaffer, Seth M Weinberg, Tomek Swigut, Peter Claes, Licia Selleri, Joanna Wysocka
A common cis- regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PKDCC during chondrogenesis. eLife 13 (2024)
N Fries, Simown Howarth, John R Shaffer, Anders Esberg, Kimon Divaris, M L Marazita, I Johansson
A Polygenic Score Predicts Caries Experience in Elderly Swedish Adults. Journal of dental research (2024)
Tianyu Zou, Betsy Foxman, Daniel W McNeil, Seth M Weinberg, Mary L Marazita, John R Shaffer
Genome-Wide Analysis of Dental Caries Variability Reveals Genotype-by-Environment Interactions. Genes 14 (3) (2023)
Tianyu Zou, Betsy Foxman, Daniel W McNeil, Seth M Weinberg, Mary L Marazita, John R Shaffer
Genome-Wide Analysis of Dental Caries Variability Reveals Genotype-by-Environment Interactions. Genes 14 (3) (2023)
Deesha Bhaumik, Casey D Wright, Teresa A Marshall, Katherine Neiswanger, Daniel W McNeil, Andrew D Jones, John R Shaffer, Mary L Marazita, Betsy Foxman
Food insecurity and consumption of cariogenic foods in mothers and their two-year-old children in Appalachia. Journal of public health dentistry (2023)
Tianyu Zou, Betsy Foxman, Daniel W McNeil, Seth M Weinberg, Mary L Marazita, John R Shaffer
Genome-Wide Analysis of Dental Caries Variability Reveals Genotype-by-Environment Interactions. Genes 14 (3) (2023)
Deesha Bhaumik, Casey D Wright, Teresa A Marshall, Katherine Neiswanger, Daniel W McNeil, Andrew D Jones, John R Shaffer, Mary L Marazita, Betsy Foxman
Food insecurity and consumption of cariogenic foods in mothers and their two-year-old children in Appalachia. Journal of public health dentistry (2023)
Freida A Blostein, T Zou, Deesha Bhaumik, E Salzman, K M Bakulski, John R Shaffer, M L Marazita, Betsy Foxman
Bacterial Community Modifies Host Genetics Effect on Early Childhood Caries. Journal of dental research (2023)
Deesha Bhaumik, Casey D Wright, Teresa A Marshall, Katherine Neiswanger, Daniel W McNeil, Andrew D Jones, John R Shaffer, Mary L Marazita, Betsy Foxman
Food insecurity and consumption of cariogenic foods in mothers and their two-year-old children in Appalachia. Journal of public health dentistry (2023)
Seppe Goovaerts, Hanne Hoskens, Ryan J Eller, Noah Herrick, Anthony M Musolf, Cristina M Justice, Meng Yuan, Sahin Naqvi, Myoung Keun Lee, Dirk Vandermeulen, Heather L Szabo-Rogers, Paul A Romitti, Simeon A Boyadjiev, Mary L Marazita, John R Shaffer, Mark D Shriver, Joanna Wysocka, Susan Walsh, Seth M Weinberg, Peter D Claes
Joint multi-ancestry and admixed GWAS reveals the complex genetics behind human cranial vault shape. Nature communications 14 (1) (2023)
Ekaterina Orlova, Tom Dudding, Jonathan M Chernus, Rasha N Alotaibi, Simown Howarth, Richard J Crout, Myoung Keun Lee, Nandita Mukhopadhyay, Eleanor Feingold, Steven M Levy, Daniel W McNeil, Betsy Foxman, Robert J Weyant, Nicholas J Timpson, Mary L Marazita, John R Shaffer
Association of Early Childhood Caries with Bitter Taste Receptors: A Meta-Analysis of Genome-Wide Association Studies and Transcriptome-Wide Association Study. Genes 14 (1) (2022)
Ekaterina Orlova, Tom Dudding, Jonathan M Chernus, Rasha N Alotaibi, Simown Howarth, Richard J Crout, Myoung Keun Lee, Nandita Mukhopadhyay, Eleanor Feingold, Steven M Levy, Daniel W McNeil, Betsy Foxman, Robert J Weyant, Nicholas J Timpson, Mary L Marazita, John R Shaffer
Association of Early Childhood Caries with Bitter Taste Receptors: A Meta-Analysis of Genome-Wide Association Studies and Transcriptome-Wide Association Study. Genes 14 (1) (2022)
Myoung Keun Lee, Zelda T Dahl, Joel Anderton, Jennifer L Maurer, Mary L Marazita, John R Shaffer, Seth M Weinberg
Bent pinkies: Quantifying fifth finger clinodactyly in a sample of U.S. adults. PloS one 17 (7) (2022)
Ekaterina Orlova, Tom Dudding, Jonathan M Chernus, Rasha N Alotaibi, Simown Howarth, Richard J Crout, Myoung Keun Lee, Nandita Mukhopadhyay, Eleanor Feingold, Steven M Levy, Daniel W McNeil, Betsy Foxman, Robert J Weyant, Nicholas J Timpson, Mary L Marazita, John R Shaffer
Association of Early Childhood Caries with Bitter Taste Receptors: A Meta-Analysis of Genome-Wide Association Studies and Transcriptome-Wide Association Study. Genes 14 (1) (2022)
Ekaterina Orlova, Tom Dudding, Jonathan M Chernus, Rasha N Alotaibi, Simown Howarth, Richard J Crout, Myoung Keun Lee, Nandita Mukhopadhyay, Eleanor Feingold, Steven M Levy, Daniel W McNeil, Betsy Foxman, Robert J Weyant, Nicholas J Timpson, Mary L Marazita, John R Shaffer
Association of Early Childhood Caries with Bitter Taste Receptors: A Meta-Analysis of Genome-Wide Association Studies and Transcriptome-Wide Association Study. Genes 14 (1) (2022)
Kalo C Sokoto, Lisa F Platt, Linda A Alexander, Betsy Foxman, John R Shaffer, Mary L Marazita, Daniel W McNeil
Racism in oral healthcare settings: Implications for dental care-related fear/anxiety and utilization among Black/African American women in Appalachia. Journal of public health dentistry (2022)
Hanne Hoskens, Dongjing Liu, Sahin Naqvi, Myoung Keun Lee, Ryan J Eller, Karlijne Indencleef, Julie D White, Jiarui Li, Maarten H D Larmuseau, Greet Hens, Joanna Wysocka, Susan Walsh, Stephen Richmond, Mark D Shriver, John R Shaffer, Hilde Peeters, Seth M Weinberg, Peter D Claes
3D facial phenotyping by biometric sibling matching used in contemporary genomic methodologies. PLoS genetics 17 (5) (2021)
Lacey W Heinsberg, Dongjing Liu, John R Shaffer, Daniel E Weeks, Yvette P Conley
Characterization of cerebrospinal fluid DNA methylation age during the acute recovery period following aneurysmal subarachnoid hemorrhage. Epigenetics communications 1 (2021)
Myoung Keun Lee, Chenxing Liu, Elizabeth J Leslie, John R Shaffer, Jamie L Perry, Seth M Weinberg
Heritability Analysis in Twins Indicates a Genetic Basis for Velopharyngeal Morphology. The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association (2021)
Chenxing Liu, Myoung Keun Lee, Sahin Naqvi, Hanne Hoskens, Dongjing Liu, Julie D White, Karlijne Indencleef, Harold Matthews, Ryan J Eller, Jiarui Li, Jaaved Mohammed, Tomek Swigut, Stephen Richmond, Mange Manyama, Benedikt Hallgrimsson, Richard A Spritz, Eleanor Feingold, Mary L Marazita, Joanna Wysocka, Susan Walsh, Mark D Shriver, Peter D Claes, Seth M Weinberg, John R Shaffer
Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations. PLoS genetics 17 (8) (2021)
Sahin Naqvi, Yoeri Sleyp, Hanne Hoskens, Karlijne Indencleef, Jeffrey P Spence, Rose Bruffaerts, Ahmed Mohamed Radwan, Ryan J Eller, Stephen Richmond, Mark D Shriver, John R Shaffer, Seth M Weinberg, Susan Walsh, James Thompson, Jonathan K Pritchard, Stefan Sunaert, Hilde Peeters, Joanna Wysocka, Peter D Claes
Shared heritability of human face and brain shape. Nature genetics 53 (6) (2021)
Yuqiao Zhou, Richard Cuddy, Daniel W McNeil, Casey D Wright, Richard J Crout, Eleanor Feingold, Katherine Neiswanger, Mary L Marazita, John R Shaffer
Oral health and related risk indicators in north-central Appalachia differ by rurality. Community dentistry and oral epidemiology 49 (5) (2020)
Julie D White, Karlijne Indencleef, Sahin Naqvi, Ryan J Eller, Hanne Hoskens, Jasmien Roosenboom, Myoung Keun Lee, Jiarui Li, Jaaved Mohammed, Stephen Richmond, Ellen E Quillen, Heather L Norton, Eleanor Feingold, Tomek Swigut, Mary L Marazita, Hilde Peeters, Greet Hens, John R Shaffer, Joanna Wysocka, Susan Walsh, Seth M Weinberg, Mark D Shriver, Peter D Claes
Insights into the genetic architecture of the human face. Nature genetics 53 (1) (2020)
Ahmed M El Sergani, Stephanie Brandebura, Carmencita Padilla, Azeez Butali, Wasiu L Adeyemo, Consuelo Valencia-Ramírez, Claudia P Restrepo Muñeton, Lina M Moreno, Carmen J Buxó, Ross E Long, Katherine Neiswanger, John R Shaffer, Mary L Marazita, Seth M Weinberg
Parents of Children With Nonsyndromic Orofacial Clefting Show Altered Palate Shape. The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association 58 (7) (2020)
Ziyi Xiong, Gabriela Dankova, Laurence J Howe, Myoung Keun Lee, Pirro G Hysi, Markus A de Jong, Gu Zhu, Kaustubh Adhikari, Dan Li, Yi Li, Bo Pan, Eleanor Feingold, Mary L Marazita, John R Shaffer, Kerrie McAloney, Shu-Hua Xu, Li Jin, Sijia Wang, Femke M S de Vrij, Bas Lendemeijer, Stephen Richmond, Alexei Zhurov, Sarah Lewis, Gemma C Sharp, Lavinia Paternoster, Holly Thompson, Rolando Gonzalez-Jose, Maria Catira Bortolini, Samuel Canizales-Quinteros, Carla Gallo, Giovanni Poletti, Gabriel Bedoya, Francisco Rothhammer, André G Uitterlinden, M Arfan Ikram, Eppo Wolvius, Steven A Kushner, Tamar Ec Nijsten, Robert-Jan Ts Palstra, Stefan Böhringer, Sarah E Medland, Kun Tang, Andres Ruiz-Linares, Nicholas G Martin, Timothy D Spector, Evie Stergiakouli, Seth M Weinberg, Fan Liu, Manfred Kayser, null null
Novel genetic loci affecting facial shape variation in humans. eLife 8 (2019)
Mengxia Chen, Casey D Wright, Oluwabunmi Tokede, Alfa Yansane, Alexander Montasem, Elsbeth Kalenderian, Terri H Beaty, Eleanor Feingold, John R Shaffer, Richard J Crout, Katherine Neiswanger, Robert J Weyant, Mary L Marazita, Daniel W McNeil
Predictors of dental care utilization in north-central Appalachia in the USA. Community dentistry and oral epidemiology 47 (4) (2019)
Dmitry Shungin, Simown Howarth, Kimon Divaris, Cary S Agler, Yoichiro Kamatani, Myoung Keun Lee, Kelsey Grinde, George Hindy, Viivi Alaraudanjoki, Paula Pesonen, Alexander Teumer, Birte Holtfreter, Saori Sakaue, Jun Hirata, Yau-Hua Yu, Paul M Ridker, Franco Giulianini, Daniel I Chasman, Patrik K E Magnusson, Takeaki Sudo, Yukinori Okada, Linus Völker, Thomas Kocher, Vuokko Anttonen, Marja-Liisa Laitala, Marju Orho-Melander, Tamar Sofer, John R Shaffer, Alexandre Vieira, Mary L Marazita, Michiaki Kubo, Yasushi Furuichi, Kari E North, Steve Offenbacher, Erik Ingelsson, Paul W Franks, Nicholas John Timpson, Ingegerd Johansson
Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data. Nature communications 10 (1) (2019)
John R Shaffer, Jessica LeClair, Jenna C Carlson, Eleanor Feingold, Carmen J Buxó, Kaare Christensen, Frederic W B Deleyiannis, L Leigh Field, Jacqueline T Hecht, Lina Moreno, Iêda Maria Orioli, Carmencita Padilla, Alexandre R Vieira, George L Wehby, Jeffrey C Murray, Seth M Weinberg, Mary L Marazita, Elizabeth J Leslie
Association of low-frequency genetic variants in regulatory regions with nonsyndromic orofacial clefts. American journal of medical genetics. Part A 179 (3) (2018)
Jonathan Chernus, Jasmien Roosenboom, Matthew Ford, Myoung Keun Lee, Beth Emanuele, Joel Anderton, Jacqueline T Hecht, Carmencita Padilla, Frederic W B Deleyiannis, Carmen J Buxo, Eleanor Feingold, Elizabeth J Leslie, John R Shaffer, Seth M Weinberg, Mary L Marazita
GWAS reveals loci associated with velopharyngeal dysfunction. Scientific reports 8 (1) (2018)
Olivier Duverger, Jenna C Carlson, Chelsea M Karacz, Mary E Schwartz, Michael A Cross, Mary L Marazita, John R Shaffer, Maria I Morasso
Genetic variants in pachyonychia congenita-associated keratins increase susceptibility to tooth decay. PLoS genetics 14 (1) (2018)
Laurence J Howe, Myoung Keun Lee, Gemma C Sharp, George Davey Smith, Beate St Pourcain, John R Shaffer, Kerstin U Ludwig, Elisabeth Mangold, Mary L Marazita, Eleanor Feingold, Alexei Zhurov, Evie Stergiakouli, Jonathan Sandy, Stephen Richmond, Seth M Weinberg, Gibran Hemani, Sarah J Lewis
Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology. PLoS genetics 14 (8) (2018)
Ekaterina Orlova, Andrew Yeh, Min Shi, Brian Firek, Sarangarajan Ranganathan, null null, David C Whitcomb, David N Finegold, Robert E Ferrell, M Michael Barmada, Mary L Marazita, David A Hinds, John R Shaffer, Michael J Morowitz
Genetic association and differential expression of PITX2 with acute appendicitis. Human genetics 138 (1) (2018)
Jasmien Roosenboom, Myoung Keun Lee, Jacqueline T Hecht, Carrie L Heike, George L Wehby, Kaare Christensen, Eleanor Feingold, Mary L Marazita, Ali Murat Maga, John R Shaffer, Seth M Weinberg
Mapping genetic variants for cranial vault shape in humans. PloS one 13 (4) (2018)
Cameron L Randall, Casey D Wright, Jonathan M Chernus, Daniel W McNeil, Eleanor Feingold, Richard J Crout, Katherine Neiswanger, Robert J Weyant, John R Shaffer, Mary L Marazita
A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain. Pain research & management 2017 (2017)
Deyana D Lewis, John R Shaffer, E Feingold, M Cooper, M M Vanyukov, B S Maher, R L Slayton, M C Willing, S E Reis, Daniel W McNeil, R J Crout, R J Weyant, S M Levy, Alexandre Rezende Vieira, M L Marazita
Genetic Association of MMP10, MMP14, and MMP16 with Dental Caries. International journal of dentistry 2017 (2017)
Casey D Wright, Daniel W McNeil, Cierra B Edwards, Richard J Crout, Katherine Neiswanger, John R Shaffer, Mary L Marazita
Periodontal Status and Quality of Life: Impact of Fear of Pain and Dental Fear. Pain research & management 2017 (2017)
Scott Eckert, Eleanor Feingold, Margaret Cooper, Michael M Vanyukov, Brion S Maher, Rebecca L Slayton, Marcia C Willing, Steven E Reis, Daniel W McNeil, Richard J Crout, Robert J Weyant, Steven M Levy, Alexandre R Vieira, Mary L Marazita, John R Shaffer
Variants on chromosome 4q21 near PKD2 and SIBLINGs are associated with dental caries. Journal of human genetics 62 (4) (2017)