John S Mattick

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 26

Top Topics

Dna Methylation

Top Venues

Molecular biology and evolution

Genome research

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Mitchell Cummins, Cadel Watson, Richard J Edwards, John S Mattick
The Evolution of Ultraconserved Elements in Vertebrates. Molecular biology and evolution 41 (7) (2024)
Mitchell Cummins, Cadel Watson, Richard J Edwards, John S Mattick
The evolution of ultraconserved elements in vertebrates. Molecular biology and evolution (2024)
Mitchell Cummins, Cadel Watson, Richard J Edwards, John S Mattick
The Evolution of Ultraconserved Elements in Vertebrates. Molecular biology and evolution 41 (7) (2024)
Mitchell Cummins, Cadel Watson, Richard J Edwards, John S Mattick
The Evolution of Ultraconserved Elements in Vertebrates. Molecular biology and evolution 41 (7) (2024)
Mitchell Cummins, Cadel Watson, Richard J Edwards, John S Mattick
The Evolution of Ultraconserved Elements in Vertebrates. Molecular biology and evolution 41 (7) (2024)
Andreas Werner, Aditi Kanhere, Claes Wahlestedt, John S Mattick
Natural antisense transcripts as versatile regulators of gene expression. Nature reviews. Genetics (2024)
Mitchell Cummins, Cadel Watson, Richard J Edwards, John S Mattick
The evolution of ultraconserved elements in vertebrates. Molecular biology and evolution (2024)
John S Mattick
A Kuhnian revolution in molecular biology: Most genes in complex organisms express regulatory RNAs. BioEssays : news and reviews in molecular, cellular and developmental biology (2023)
John S Mattick, Paulo P Amaral, Piero Carnici, Susan Carpenter, Howard Y Chang, Ling-Ling Chen, Runsheng Chen, Caroline Dean, Marcel E Dinger, Katherine A Fitzgerald, Thomas R Gingeras, Mitchell Guttman, Tetsuro Hirose, Maite Huarte, Rory Johnson, Chandrasekhar Kanduri, Philipp Kapranov, Jeanne B Lawrence, Jeannie T Lee, Joshua T Mendell, Timothy R Mercer, Kathryn J Moore, Shinichi Nakagawa, John L Rinn, David L Spector, Igor Ulitsky, Yue Wan, Jeremy E Wilusz, Mian Wu
Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature reviews. Molecular cell biology (2023)
Oguzhan Begik, Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor, Cassandra Kontur, Adnan Muhammad Niazi, Eivind Valen, Antonio J Giraldez, Jean-Denis Beaudoin, John S Mattick, Eva Maria Novoa
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature methods 20 (1) (2022)
Oguzhan Begik, John S Mattick, Eva Maria Novoa
Exploring the epitranscriptome by native RNA sequencing. RNA (New York, N.Y.) 28 (11) (2022)
Oguzhan Begik, Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor, Cassandra Kontur, Adnan Muhammad Niazi, Eivind Valen, Antonio J Giraldez, Jean-Denis Beaudoin, John S Mattick, Eva Maria Novoa
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature methods 20 (1) (2022)
Oguzhan Begik, Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor, Cassandra Kontur, Adnan Muhammad Niazi, Eivind Valen, Antonio J Giraldez, Jean-Denis Beaudoin, John S Mattick, Eva Maria Novoa
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature methods 20 (1) (2022)
Oguzhan Begik, Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor, Cassandra Kontur, Adnan Muhammad Niazi, Eivind Valen, Antonio J Giraldez, Jean-Denis Beaudoin, John S Mattick, Eva Maria Novoa
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature methods 20 (1) (2022)
Oguzhan Begik, Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor, Cassandra Kontur, Adnan Muhammad Niazi, Eivind Valen, Antonio J Giraldez, Jean-Denis Beaudoin, John S Mattick, Eva Maria Novoa
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature methods 20 (1) (2022)
Oguzhan Begik, Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor, Cassandra Kontur, Adnan Muhammad Niazi, Eivind Valen, Antonio J Giraldez, Jean-Denis Beaudoin, John S Mattick, Eva Maria Novoa
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature methods (2022)
Nenad Bartonicek, Romain Rouet, Joanna Warren, Claudia Loetsch, Gabriela Santos Rodriguez, Stacey Walters, Francis Lin, David Zahra, James Blackburn, Jillian M Hammond, Andre L M Reis, Ira W Deveson, Nathan W Zammit, Mahdi Zeraati, Shane Grey, Daniel Christ, John S Mattick, Tatyana Chtanova, Robert Brink, Marcel E Dinger, Robert J Weatheritt, Jonathan Sprent, Cecile King
The retroelement Lx9 puts a brake on the immune response to virus infection. Nature 608 (7924) (2022)
Oguzhan Begik, Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor, Cassandra Kontur, Adnan Muhammad Niazi, Eivind Valen, Antonio J Giraldez, Jean-Denis Beaudoin, John S Mattick, Eva Maria Novoa
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature methods 20 (1) (2022)
Andreas Werner, James E Clark, Calum Samaranayake, John Casement, Hany S Zinad, Shaymaa Sadeq, Surar Al-Hashimi, Martin A Smith, Noora Kotaja, John S Mattick
Widespread formation of double-stranded RNAs in testis. Genome research (2021)
Pinki Dey, John S Mattick
High frequency of intron retention and clustered H3K4me3-marked nucleosomes in short first introns of human long non-coding RNAs. Epigenetics & chromatin 14 (1) (2021)
Oguzhan Begik, Morghan C Lucas, Leszek P Pryszcz, Jose Miguel Ramirez, Rebeca Medina, Ivan Milenkovic, Sonia Cruciani, Huanle Liu, Helaine Graziele Santos Vieira, Aldema Sas-Chen, John S Mattick, Schraga Schwartz, Eva Maria Novoa
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing. Nature biotechnology 39 (10) (2021)
Sandy S Pineda, Yanni K-Y Chin, Eivind A B Undheim, Sebastian Senff, Mehdi Mobli, Claire Dauly, Pierre Escoubas, Graham M Nicholson, Quentin Kaas, Shaodong Guo, Volker Herzig, John S Mattick, Glenn F King
Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene. Proceedings of the National Academy of Sciences of the United States of America 117 (21) (2020)
Xianjun Dong, Zhixiang Liao, David Gritsch, Yavor Hadzhiev, Yunfei Bai, Joseph J Locascio, Boris Guennewig, Ganqiang Liu, Cornelis Blauwendraat, Tao Wang, Charles H Adler, John C Hedreen, Richard L M Faull, Matthew P Frosch, Peter T Nelson, Patrizia Rizzu, Antony A Cooper, Peter Heutink, Thomas G Beach, John S Mattick, Ferenc Müller, Clemens R Scherzer
Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease. Nature neuroscience 21 (10) (2018)
Brett Doble, Deborah J Schofield, Tony Roscioli, John S Mattick
Prioritising the application of genomic medicine. NPJ genomic medicine 2 (2017)
Simon A Hardwick, Wendy Y Chen, Ted Wong, Ira W Deveson, James Blackburn, Stacey B Andersen, Lars Keld Nielsen, John S Mattick, Tim R Mercer
Spliced synthetic genes as internal controls in RNA sequencing experiments. Nature methods 13 (9) (2016)
Ira W Deveson, Wendy Y Chen, Ted Wong, Simon A Hardwick, Stacey B Andersen, Lars Keld Nielsen, John S Mattick, Tim R Mercer
Representing genetic variation with synthetic DNA standards. Nature methods 13 (9) (2016)
Michael B Clark, Tim R Mercer, Giovanni Bussotti, Tommaso Leonardi, Katelin R Haynes, Joanna Crawford, Marion E Brunck, Kim-Anh Lê Cao, Gethin P Thomas, Wendy Y Chen, Ryan J Taft, Lars Keld Nielsen, Anton J Enright, John S Mattick, Marcel E Dinger
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing. Nature methods 12 (4) (2015)
John S Mattick, John L Rinn
Discovery and annotation of long noncoding RNAs. Nature structural & molecular biology 22 (1) (2015)
Tim R Mercer, Michael B Clark, Joanna Crawford, Marion E Brunck, Daniel J Gerhardt, Ryan J Taft, Lars Keld Nielsen, Marcel E Dinger, John S Mattick
Targeted sequencing for gene discovery and quantification using RNA CaptureSeq. Nature protocols 9 (5) (2014)