Jonathan P K Doye

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 22

Top Venues

The Journal of chemical physics

Proceedings of the National Academy of Sciences of the United States of America

ACS nano

Journal of chemical theory and computation

University of Oxford

University of Cambridge (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Oxford

United Kingdom

Professor in Theoretical Chemistry

Queen's College, University of Oxford

United Kingdom

Jack Linnett Fellow in Chemistry

University of Oxford

United Kingdom

Lecturer in Theoretical Chemistry

University of Cambridge

United Kingdom

Royal Society University Research Fellow :: Chemistry

Emmanuel College, University of Cambridge

United Kingdom

Sir Alan Wilson Research Fellow

FOM-instituut AMOLF

Netherlands

Post-doctoral Researcher

Education History

University of Cambridge

United Kingdom

PHD :: Chemistry

Publications

Eryk J Ratajczyk, Petr Sulc, Andrew J Turberfield, Jonathan P K Doye, Ard A Louis
Coarse-grained modeling of DNA-RNA hybrids. The Journal of chemical physics 160 (11) (2024)
Xiao Wang, Shanshan Li, Hyungmin Jun, Torsten John, Kaiming Zhang, Hannah Fowler, Jonathan P K Doye, Wah Chiu, Mark Bathe
Planar 2D wireframe DNA origami. Science advances 8 (20) (2022)
Wilber Lim, Ferdinando Randisi, Jonathan P K Doye, Ard A Louis
The interplay of supercoiling and thymine dimers in DNA. Nucleic acids research 50 (5) (2022)
Chak Kui Wong, Chuyan Tang, John S Schreck, Jonathan P K Doye
Characterizing the free-energy landscapes of DNA origamis. Nanoscale 14 (7) (2022)
Iain G Johnston, Kamaludin Dingle, Sam F Greenbury, Chico Q Camargo, Jonathan P K Doye, Sebastian E Ahnert, Ard A Louis
Reply to Ocklenburg and Mundorf: The interplay of developmental bias and natural selection. Proceedings of the National Academy of Sciences of the United States of America 119 (28) (2022)
Iain G Johnston, Kamaludin Dingle, Sam F Greenbury, Chico Q Camargo, Jonathan P K Doye, Sebastian E Ahnert, Ard A Louis
Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution. Proceedings of the National Academy of Sciences of the United States of America 119 (11) (2022)
Eva G Noya, Chak Kui Wong, Pablo Llombart, Jonathan P K Doye
How to design an icosahedral quasicrystal through directional bonding. Nature 596 (7872) (2021)
Daniel F Tracey, Eva G Noya, Jonathan P K Doye
Programming patchy particles to form three-dimensional dodecagonal quasicrystals. The Journal of chemical physics 154 (19) (2021)
Jonathan P K Doye, Eva G Noya
Computational explorations in the space of one-component crystals. Proceedings of the National Academy of Sciences of the United States of America 118 (23) (2021)
Hanquan Su, Joshua M Brockman, Yuxin Duan, Navoneel Sen, Hemani Chhabra, Alisina Bazrafshan, Aaron T Blanchard, Travis Meyer, Brooke Andrews, Jonathan P K Doye, Yonggang Ke, R Brian Dyer, Khalid Salaita
Massively Parallelized Molecular Force Manipulation with On-Demand Thermal and Optical Control. Journal of the American Chemical Society 143 (46) (2021)
Maxime M C Tortora, Garima Mishra, Domen Prešern, Jonathan P K Doye
Chiral shape fluctuations and the origin of chirality in cholesteric phases of DNA origamis. Science advances 6 (31) (2020)
Hemani Chhabra, Garima Mishra, Yijing Cao, Domen Prešern, Enrico Skoruppa, Maxime M C Tortora, Jonathan P K Doye
Computing the Elastic Mechanical Properties of Rodlike DNA Nanostructures. Journal of chemical theory and computation 16 (12) (2020)
Meta Heidenreich, Joseph M Georgeson, Emanuele Locatelli, Lorenzo Rovigatti, Saroj Kumar Nandi, Avital Steinberg, Yotam Nadav, Eyal Shimoni, Samuel A Safran, Jonathan P K Doye, Emmanuel D Levy
Designer protein assemblies with tunable phase diagrams in living cells. Nature chemical biology 16 (9) (2020)
Jonathan F Berengut, Chak Kui Wong, Julian C Berengut, Jonathan P K Doye, Thomas E Ouldridge, Lawrence K Lee
Self-Limiting Polymerization of DNA Origami Subunits with Strain Accumulation. ACS nano (2020)
Megan C Engel, Flavio Romano, Ard A Louis, Jonathan P K Doye
Measuring Internal Forces in Single-Stranded DNA: Application to a DNA Force Clamp. Journal of chemical theory and computation 16 (12) (2020)
Katherine G Young, Behnam Najafi, William M Sant, Sonia Contera, Ard A Louis, Jonathan P K Doye, Andrew J Turberfield, Jonathan Bath
Reconfigurable T-junction DNA Origami. Angewandte Chemie (International ed. in English) 59 (37) (2020)
Ryan M Harrison, Flavio Romano, Thomas E Ouldridge, Ard A Louis, Jonathan P K Doye
Identifying Physical Causes of Apparent Enhanced Cyclization of Short DNA Molecules with a Coarse-Grained Model. Journal of chemical theory and computation 15 (8) (2019)
Daniel F Tracey, Eva G Noya, Jonathan P K Doye
Programming patchy particles to form complex periodic structures. The Journal of chemical physics 151 (22) (2019)
Megan C Engel, David M Smith, Markus A Jobst, Martin Sajfutdinow, Tim Liedl, Flavio Romano, Lorenzo Rovigatti, Ard A Louis, Jonathan P K Doye
Force-Induced Unravelling of DNA Origami. ACS nano 12 (7) (2018)
Maxime M C Tortora, Jonathan P K Doye
Hierarchical bounding structures for efficient virial computations: Towards a realistic molecular description of cholesterics. The Journal of chemical physics 147 (22) (2018)
Pedro Fonseca, Flavio Romano, John S Schreck, Thomas E Ouldridge, Jonathan P K Doye, Ard A Louis
Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly. The Journal of chemical physics 148 (13) (2018)
Rahul Sharma, John S Schreck, Flavio Romano, Ard A Louis, Jonathan P K Doye
Characterizing the Motion of Jointed DNA Nanostructures Using a Coarse-Grained Model. ACS nano 11 (12) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jonathan P K Doye