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Kaiming Zhang

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 43

Top Venues

Nature communications

Nucleic acids research

Proceedings of the National Academy of Sciences of the United States of America

Science advances

Baylor College of Medicine

Peking University Health Science Centre (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Baylor College of Medicine Jul 1o 2015

United States

Postdoc Associate :: Biochemistry

Education History

Peking University Health Science Centre Sep 1o 2010 - Jul 1o 2015

China

PHD :: Biophsics

Publications

Shanshan Li, Michael Z Palo, Xiaojing Zhang, Grigore Pintilie, Kaiming Zhang
Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nature communications 14 (1) (2023)
Mingxing Wang, Jin He, Shanshan Li, Qianwen Cai, Kaiming Zhang, Ji She
Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter. Nature communications 14 (1) (2023)
Shanshan Li, Michael Z Palo, Xiaojing Zhang, Grigore Pintilie, Kaiming Zhang
Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nature communications 14 (1) (2023)
Xiaojing Zhang, Shanshan Li, Grigore Pintilie, Michael Z Palo, Kaiming Zhang
Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nucleic acids research 51 (3) (2023)
Rachael C Kretsch, Ebbe Sloth Andersen, Janusz M Bujnicki, Wah Chiu, Rachel J Hagey, Bingnan Luo, Benoît Masquida, Ewan K S McRae, Griffin M Schroeder, Zhaoming Su, Joseph E Wedekind, Lily Xu, Kaiming Zhang, Ivan N Zheludev, John Moult, Andriy Kryshtafovych
RNA target highlights in CASP15: Evaluation of predicted models by structure providers. Proteins (2023)
Shanshan Li, Kan-Yen Hsieh, Chiao-I Kuo, Tzu-Chi Lin, Szu-Hui Lee, Yi-Ru Chen, Chun-Hsiung Wang, Meng-Ru Ho, See-Yeun Ting, Kaiming Zhang, Chung-I Chang
A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine. Nature communications 14 (1) (2023)
Mingxing Wang, Jin He, Shanshan Li, Qianwen Cai, Kaiming Zhang, Ji She
Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter. Nature communications 14 (1) (2023)
Xiaojing Zhang, Shanshan Li, Grigore Pintilie, Michael Z Palo, Kaiming Zhang
Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nucleic acids research (2023)
Mingxing Wang, Jin He, Shanshan Li, Qianwen Cai, Kaiming Zhang, Ji She
Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter. Nature communications 14 (1) (2023)
Xiaojing Zhang, Shanshan Li, Grigore Pintilie, Michael Z Palo, Kaiming Zhang
Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nucleic acids research 51 (3) (2023)
Xiaojing Zhang, Shanshan Li, Grigore Pintilie, Michael Z Palo, Kaiming Zhang
Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nucleic acids research 51 (3) (2023)
Mingxing Wang, Jin He, Shanshan Li, Qianwen Cai, Kaiming Zhang, Ji She
Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter. Nature communications 14 (1) (2023)
Xiaojing Zhang, Shanshan Li, Grigore Pintilie, Michael Z Palo, Kaiming Zhang
Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nucleic acids research (2023)
Shanshan Li, Michael Z Palo, Xiaojing Zhang, Grigore Pintilie, Kaiming Zhang
Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nature communications 14 (1) (2023)
Shanshan Li, Michael Z Palo, Xiaojing Zhang, Grigore Pintilie, Kaiming Zhang
Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nature communications 14 (1) (2023)
Shichen Su, Shanshan Li, Ting Deng, Minsong Gao, Yue Yin, Baixing Wu, Chao Peng, Jianzhao Liu, Jinbiao Ma, Kaiming Zhang
Cryo-EM structures of human m 6 A writer complexes. Cell research 32 (11) (2022)
Liang Chen, Yucong Wang, Jiamei Lin, Zhenxing Song, Qinwei Wang, Wenfang Zhao, Yan Wang, Xiaoyu Xiu, Yuqi Deng, Xiuzhi Li, Qiqi Li, Xiaolin Wang, Jingxin Li, Xu Liu, Kunpeng Liu, Jincong Zhou, Kuan Li, Yuchan Liu, Shanhui Liao, Qin Deng, Chao Xu, Qianwen Sun, Shengzhou Wu, Kaiming Zhang, Min-Xin Guan, Tianhua Zhou, Fei Sun, Xiujun Cai, Chuan Huang, Ge Shan
Exportin 4 depletion leads to nuclear accumulation of a subset of circular RNAs. Nature communications 13 (1) (2022)
Xiao Wang, Shanshan Li, Hyungmin Jun, Torsten John, Kaiming Zhang, Hannah Fowler, Jonathan P K Doye, Wah Chiu, Mark Bathe
Planar 2D wireframe DNA origami. Science advances 8 (20) (2022)
Shanshan Li, Michael Z Palo, Grigore Pintilie, Xiaojing Zhang, Zhaoming Su, Kalli Kappel, Wah Chiu, Kaiming Zhang, Rachel J Hagey
Topological crossing in the misfolded Tetrahymena ribozyme resolved by cryo-EM. Proceedings of the National Academy of Sciences of the United States of America 119 (37) (2022)
Haiyun Ma, Xinyu Jia, Kaiming Zhang, Zhaoming Su
Cryo-EM advances in RNA structure determination. Signal transduction and targeted therapy 7 (1) (2022)
Ruimin Gao, Huan Tan, Shanshan Li, Shaojie Ma, Yufu Tang, Kaiming Zhang, Zhiping Zhang, Quli Fan, Jun Yang, Xian-En Zhang, Feng Li
A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability. Proceedings of the National Academy of Sciences of the United States of America 119 (5) (2022)
Kaiming Zhang, Naoki Horikoshi, Shanshan Li, Alexander S Powers, Mikhail A Hameedi, Grigore D Pintilie, Hee-Don Chae, Yousuf A Khan, Carl-Mikael Suomivuori, Ron O Dror, Kathleen M Sakamoto, Wah Chiu, Soichi Wakatsuki
Cryo-EM, Protein Engineering, and Simulation Enable the Development of Peptide Therapeutics against Acute Myeloid Leukemia. ACS central science 8 (2) (2022)
Qiong Guo, Shidong Zhao, Rosario Francisco-Velilla, Jiahai Zhang, Azman Embarc-Buh, Salvador Abellan, Mengqi Lv, Peiping Tang, Qingguo Gong, Huaizong Shen, Linfeng Sun, Xuebiao Yao, Jinrong Min, Yunyu Shi, Encarnacion Martínez-Salas, Kaiming Zhang, Chao Xu
Structural basis for Gemin5 decamer-mediated mRNA binding. Nature communications 13 (1) (2022)
Dillon P Cogan, Kaiming Zhang, Xiuyuan Li, Shanshan Li, Grigore D Pintilie, Soung Hun Roh, Charles S Craik, Wah Chiu, Chaitan Khosla
Mapping the catalytic conformations of an assembly-line polyketide synthase module. Science (New York, N.Y.) 374 (6568) (2021)
Catherine L Lawson, Andriy Kryshtafovych, Paul D Adams, Pavel V Afonine, Matthew L Baker, Benjamin A Barad, Paul S Bond, Tom Burnley, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kevin D Cowtan, Ken A Dill, Frank DiMaio, Daniel P Farrell, James S Fraser, Mark A Herzik, Soon Wen Hoh, Jie Hou, Li-Wei Hung, Maxim Igaev, Agnel-Praveen Joseph, Daisuke Kihara, Dilip Kumar, Sumit Mittal, Bohdan Monastyrskyy, Mateusz Olek, Colin M Palmer, Ardan Patwardhan, Alberto Perez, Jonas Pfab, Grigore D Pintilie, Jane S Richardson, Peter B Rosenthal, Daipayan Sarkar, Luisa U Schäfer, Michael F Schmid, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Genki Terashi, Thomas C Terwilliger, Andrea C Vaiana, Liguo Wang, Zhe Wang, Stephanie A Wankowicz, Christopher J Williams, Martyn D Winn, Tianqi Wu, Xiaodi Yu, Kaiming Zhang, Helen M Berman, Wah Chiu
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nature methods 18 (2) (2021)
Kaiming Zhang, Ivan N Zheludev, Rachel J Hagey, Raphael Haslecker, Yixuan J Hou, Rachael Kretsch, Grigore D Pintilie, Ramya Rangan, Wipapat Kladwang, Shanshan Li, Marie Teng-Pei Wu, Edward A Pham, Claire Bernardin-Souibgui, Ralph S Baric, Timothy P Sheahan, Victoria D'Souza, Jeffrey S Glenn, Wah Chiu, Rachel J Hagey
Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome. Nature structural & molecular biology 28 (9) (2021)
Seyed-Fakhreddin Torabi, Yen-Lin Chen, Kaiming Zhang, Jimin Wang, Suzanne J DeGregorio, Anand T Vaidya, Zhaoming Su, Suzette A Pabit, Wah Chiu, Lois Pollack, Joan A Steitz
Structural analyses of an RNA stability element interacting with poly(A). Proceedings of the National Academy of Sciences of the United States of America 118 (14) (2021)
Shanshan Li, Kan-Yen Hsieh, Chiao-I Kuo, Shih-Chieh Su, Kai-Fa Huang, Kaiming Zhang, Chung-I Chang
Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex. Science advances 7 (46) (2021)
Shanshan Li, Kan-Yen Hsieh, Chiao-I Kuo, Szu-Hui Lee, Grigore D Pintilie, Kaiming Zhang, Chung-I Chang
Complete three-dimensional structures of the Lon protease translocating a protein substrate. Science advances 7 (42) (2021)
Peter J Blanco Carcache, Sijin Guo, Hui Li, Kaiming Zhang, Congcong Xu, Wah Chiu, Peixuan Guo
Regulation of reversible conformational change, size switching, and immunomodulation of RNA nanocubes. RNA (New York, N.Y.) 27 (9) (2021)
Kaiming Zhang, Shanshan Li, Grigore D Pintilie, David Chmielewski, Michael F Schmid, Graham Simmons, Jing Jin, Wah Chiu
A 3.4-Å cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles. bioRxiv : the preprint server for biology (2020)
Kaiming Zhang, Shuo Wang, Shanshan Li, Yuwei Zhu, Grigore D Pintilie, Tung-Chung Mou, Michael F Schmid, Zhiwei Huang, Wah Chiu
Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM. Proceedings of the National Academy of Sciences of the United States of America 117 (13) (2020)
Kalli Kappel, Kaiming Zhang, Zhaoming Su, Andrew M Watkins, Wipapat Kladwang, Shanshan Li, Grigore D Pintilie, Ved V Topkar, Ramya Rangan, Ivan N Zheludev, Joseph D Yesselman, Wah Chiu, Rachel J Hagey
Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures. Nature methods 17 (7) (2020)
Grigore D Pintilie, Kaiming Zhang, Zhaoming Su, Shanshan Li, Michael F Schmid, Wah Chiu
Measurement of atom resolvability in cryo-EM maps with Q-scores. Nature methods 17 (3) (2020)
Levi J McClelland, Kaiming Zhang, Tung-Chung Mou, Jake Johnston, Cindee Yates-Hansen, Shanshan Li, Celestine J Thomas, Tzanko I Doukov, Sarah Triest, Alexandre Wohlkonig, Gregory G Tall, Jan Steyaert, Wah Chiu, Stephen R Sprang
Structure of the G protein chaperone and guanine nucleotide exchange factor Ric-8A bound to Gαi1. Nature communications 11 (1) (2020)
Sijin Guo, Mario Vieweger, Kaiming Zhang, Hongran Yin, Hongzhi Wang, Xin Li, Shanshan Li, Shuiying Hu, Alex Sparreboom, B Mark Evers, Yizhou Dong, Wah Chiu, Peixuan Guo
Ultra-thermostable RNA nanoparticles for solubilizing and high-yield loading of paclitaxel for breast cancer therapy. Nature communications 11 (1) (2020)
Kaiming Zhang, Shanshan Li, Grigore D Pintilie, David Chmielewski, Michael F Schmid, Graham Simmons, Jing Jin, Wah Chiu
A 3.4-Å cryo-electron microscopy structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles. QRB discovery 1 (2020)
Kaiming Zhang, Ivan N Zheludev, Rachel J Hagey, Marie Teng-Pei Wu, Raphael Haslecker, Yixuan J Hou, Rachael C Kretsch, Grigore D Pintilie, Ramya Rangan, Wipapat Kladwang, Shanshan Li, Edward A Pham, Claire Bernardin-Souibgui, Ralph S Baric, Timothy P Sheahan, Victoria D Souza, Jeffrey S Glenn, Wah Chiu, Rachel J Hagey
Cryo-electron Microscopy and Exploratory Antisense Targeting of the 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome. bioRxiv : the preprint server for biology (2020)
Kaiming Zhang, Grigore D Pintilie, Shanshan Li, Michael F Schmid, Wah Chiu
Resolving individual atoms of protein complex by cryo-electron microscopy. Cell research 30 (12) (2020)
Kaiming Zhang, Huawei Zhang, Shanshan Li, Grigore D Pintilie, Tung-Chung Mou, Yuanzhu Gao, Qinfen Zhang, Henry van den Bedem, Michael F Schmid, Shannon Wing Ngor Au, Wah Chiu
Cryo-EM structures of Helicobacter pylori vacuolating cytotoxin A oligomeric assemblies at near-atomic resolution. Proceedings of the National Academy of Sciences of the United States of America 116 (14) (2019)
Shuang Li, Zhaoming Su, Jean Lehmann, Vassiliki Stamatopoulou, Nikoleta Giarimoglou, Frances E Henderson, Lixin Fan, Grigore D Pintilie, Kaiming Zhang, Muyuan Chen, Steven J Ludtke, Yun-Xing Wang, Constantinos Stathopoulos, Wah Chiu, Jinwei Zhang
Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nature structural & molecular biology 26 (12) (2019)
Hyungmin Jun, Tyson R Shepherd, Kaiming Zhang, William P Bricker, Shanshan Li, Wah Chiu, Mark Bathe
Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges. ACS nano 13 (2) (2019)
Kaiming Zhang, Shanshan Li, Kalli Kappel, Grigore Pintilie, Zhaoming Su, Tung-Chung Mou, Michael F Schmid, Rachel J Hagey, Wah Chiu
Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution. Nature communications 10 (1) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Kaiming Zhang